NO08G03300.1, NO08G03300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03300.1
Unique NameNO08G03300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1077
Alignment locationchr8:910744..911820 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:910744..911820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03300.1 vs.
Match: EWM26835.1 (Siva [Nannochloropsis gaditana])

HSP 1 Score: 150.6 bits (379), Expect = 9.300e-33
Identity = 138/377 (36.60%), Postives = 179/377 (47.48%), Query Frame = 0 
Query:    3 PSSW-WSRRDENNA----ASAASSSGAAAAGAMTADPLKSRSVGF---GVNVGSKREALGVLQPSSLPSIPHGAAISEEGGGGDSMLPSSRPWKMARVQLSQPPSQYIGQVQEPLICVTTIGPPV--VGMEEEAMEKNYHNTTRQQPQQPQGPAQH-SPPTLAGQSRRQTAAYGGVTNALLQLRSPSTAAASKAGTMRQQQQQLQQK-----TLQKD---CDICLLSSSSSQSSNGSQSSRDGSNQQHGMMRTSRHPQEIAAMALWARGPQRAMTMSQSPPHAQQQQQQ---------------------------QQQGSGHSDCWISIGRCRHCERGVCKTCLRDCEACRETFCSLCSTVDYGGAFEKVVCIDCG 334
            PS+W WSRRDEN A    + AAS++ +      T  P +     F   GV+VG KR+ LG L      S P  +  SE  G   +   S+RPWK   +Q   P +QY       ++  T I  P+   GMEE+  +          P      A H +PPTLAGQSRRQTAAY         L  PS  +       +QQ+Q  + +      L  D   CD+CL              S          +R SRHPQE+AA+A WA G      + Q PP    Q+Q+                           ++  +  + CW S+ +CRHCERGVCKTCLR CEAC+E FCS+CSTVDYGGAFE+V+CIDCG
Sbjct:    5 PSTWGWSRRDENAAPPPPSFAASTNVSCKFEDKTKGPRRQYPTTFANKGVSVGRKRQVLGAL------SSPAVSGHSEPEGNKHTEFVSARPWKQPCLQ---PCTQY---TSNRIMSDTVIQEPLNPCGMEEDGGDDREECCI---PSNLHHAASHVTPPTLAGQSRRQTAAYRKDD----VLSHPSLTSPEGMSVQQQQRQNNENRWGDAPRLASDSQRCDVCLPPPRPDDPQRCFNYS----------LRQSRHPQEMAAIAQWAGGLH--PRLGQPPPLLSWQKQESELLAEDRLERRQQEPMLVSPGRVQSVKEAATSTAGCWASVAQCRHCERGVCKTCLRHCEACQEPFCSICSTVDYGGAFERVLCIDCG 350
The following BLAST results are available for this feature:
BLAST of NO08G03300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26835.19.300e-3336.60Siva [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03300NO08G03300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03300.1NO08G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03300.1.cds1NO08G03300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03300.1 ID=NO08G03300.1|Name=NO08G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
ATGTGGCCTTCCTCGTGGTGGTCTCGACGCGATGAGAACAACGCAGCCTC
AGCTGCTTCTTCGTCGGGCGCAGCAGCAGCAGGAGCCATGACTGCAGATC
CTCTGAAGTCTCGCTCCGTAGGCTTTGGCGTCAATGTGGGGAGCAAACGG
GAGGCTCTGGGGGTCTTGCAGCCCTCTTCGTTGCCGTCGATTCCTCACGG
TGCTGCGATTAGTGAGGAAGGAGGTGGGGGAGACAGTATGCTCCCGTCCT
CCCGCCCGTGGAAGATGGCCCGTGTGCAGCTTAGCCAACCGCCTTCGCAA
TATATAGGGCAGGTGCAAGAGCCGTTGATATGTGTGACTACCATTGGACC
GCCGGTGGTGGGGATGGAGGAGGAAGCGATGGAAAAAAACTACCACAACA
CCACCAGGCAGCAGCCGCAGCAGCCGCAGGGCCCCGCGCAGCATTCACCC
CCTACACTCGCAGGTCAATCACGGCGACAGACGGCAGCGTACGGTGGTGT
CACTAATGCCCTTCTTCAGTTGCGCTCGCCATCCACGGCCGCGGCTTCAA
AGGCAGGGACGATGCGCCAACAGCAGCAGCAGCTGCAGCAGAAGACTTTG
CAGAAAGACTGCGATATTTGCTTGCTCTCATCCTCCTCGAGCCAGAGCAG
CAACGGCAGTCAAAGCAGCAGGGACGGTAGCAATCAGCAGCATGGCATGA
TGAGGACGAGCCGCCACCCTCAAGAAATAGCGGCGATGGCTCTCTGGGCC
AGAGGACCACAACGGGCAATGACGATGTCACAATCACCACCACACGCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGGCAGCGGGCATTCAGATTGTTGGA
TTTCGATTGGGCGCTGTCGGCATTGTGAGAGAGGGGTCTGTAAGACTTGC
CTAAGGGACTGTGAGGCGTGTCGTGAGACGTTTTGCTCGTTGTGCTCGAC
AGTGGATTATGGTGGGGCCTTTGAAAAGGTGGTGTGTATCGATTGTGGTA
AGAGGCTGGCGATCACAGCAGCAGCAGCCGCCGCAGCAGCAGTACCAAGG
GGAGGGCAAGAAATGGATTTGTCTTAA
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protein sequence of NO08G03300.1

>NO08G03300.1-protein ID=NO08G03300.1-protein|Name=NO08G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MWPSSWWSRRDENNAASAASSSGAAAAGAMTADPLKSRSVGFGVNVGSKR
EALGVLQPSSLPSIPHGAAISEEGGGGDSMLPSSRPWKMARVQLSQPPSQ
YIGQVQEPLICVTTIGPPVVGMEEEAMEKNYHNTTRQQPQQPQGPAQHSP
PTLAGQSRRQTAAYGGVTNALLQLRSPSTAAASKAGTMRQQQQQLQQKTL
QKDCDICLLSSSSSQSSNGSQSSRDGSNQQHGMMRTSRHPQEIAAMALWA
RGPQRAMTMSQSPPHAQQQQQQQQQGSGHSDCWISIGRCRHCERGVCKTC
LRDCEACRETFCSLCSTVDYGGAFEKVVCIDCGKRLAITAAAAAAAAVPR
GGQEMDLS*
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mRNA from alignment at chr8:910744..911820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03300.1 ID=NO08G03300.1|Name=NO08G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at chr8:910744..911820+ (Nannochloropsis oceanica)
ATGTGGCCTTCCTCGTGGTGGTCTCGACGCGATGAGAACAACGCAGCCTC
AGCTGCTTCTTCGTCGGGCGCAGCAGCAGCAGGAGCCATGACTGCAGATC
CTCTGAAGTCTCGCTCCGTAGGCTTTGGCGTCAATGTGGGGAGCAAACGG
GAGGCTCTGGGGGTCTTGCAGCCCTCTTCGTTGCCGTCGATTCCTCACGG
TGCTGCGATTAGTGAGGAAGGAGGTGGGGGAGACAGTATGCTCCCGTCCT
CCCGCCCGTGGAAGATGGCCCGTGTGCAGCTTAGCCAACCGCCTTCGCAA
TATATAGGGCAGGTGCAAGAGCCGTTGATATGTGTGACTACCATTGGACC
GCCGGTGGTGGGGATGGAGGAGGAAGCGATGGAAAAAAACTACCACAACA
CCACCAGGCAGCAGCCGCAGCAGCCGCAGGGCCCCGCGCAGCATTCACCC
CCTACACTCGCAGGTCAATCACGGCGACAGACGGCAGCGTACGGTGGTGT
CACTAATGCCCTTCTTCAGTTGCGCTCGCCATCCACGGCCGCGGCTTCAA
AGGCAGGGACGATGCGCCAACAGCAGCAGCAGCTGCAGCAGAAGACTTTG
CAGAAAGACTGCGATATTTGCTTGCTCTCATCCTCCTCGAGCCAGAGCAG
CAACGGCAGTCAAAGCAGCAGGGACGGTAGCAATCAGCAGCATGGCATGA
TGAGGACGAGCCGCCACCCTCAAGAAATAGCGGCGATGGCTCTCTGGGCC
AGAGGACCACAACGGGCAATGACGATGTCACAATCACCACCACACGCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGGCAGCGGGCATTCAGATTGTTGGA
TTTCGATTGGGCGCTGTCGGCATTGTGAGAGAGGGGTCTGTAAGACTTGC
CTAAGGGACTGTGAGGCGTGTCGTGAGACGTTTTGCTCGTTGTGCTCGAC
AGTGGATTATGGTGGGGCCTTTGAAAAGGTGGTGTGTATCGATTGTGGTA
AGAGGCTGGCGATCACAGCAGCAGCAGCCGCCGCAGCAGCAGTACCAAGG
GGAGGGCAAGAAATGGATTTGTCTTAA
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Coding sequence (CDS) from alignment at chr8:910744..911820+

>NO08G03300.1 ID=NO08G03300.1|Name=NO08G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr8:910744..911820+ (Nannochloropsis oceanica)
ATGTGGCCTTCCTCGTGGTGGTCTCGACGCGATGAGAACAACGCAGCCTC
AGCTGCTTCTTCGTCGGGCGCAGCAGCAGCAGGAGCCATGACTGCAGATC
CTCTGAAGTCTCGCTCCGTAGGCTTTGGCGTCAATGTGGGGAGCAAACGG
GAGGCTCTGGGGGTCTTGCAGCCCTCTTCGTTGCCGTCGATTCCTCACGG
TGCTGCGATTAGTGAGGAAGGAGGTGGGGGAGACAGTATGCTCCCGTCCT
CCCGCCCGTGGAAGATGGCCCGTGTGCAGCTTAGCCAACCGCCTTCGCAA
TATATAGGGCAGGTGCAAGAGCCGTTGATATGTGTGACTACCATTGGACC
GCCGGTGGTGGGGATGGAGGAGGAAGCGATGGAAAAAAACTACCACAACA
CCACCAGGCAGCAGCCGCAGCAGCCGCAGGGCCCCGCGCAGCATTCACCC
CCTACACTCGCAGGTCAATCACGGCGACAGACGGCAGCGTACGGTGGTGT
CACTAATGCCCTTCTTCAGTTGCGCTCGCCATCCACGGCCGCGGCTTCAA
AGGCAGGGACGATGCGCCAACAGCAGCAGCAGCTGCAGCAGAAGACTTTG
CAGAAAGACTGCGATATTTGCTTGCTCTCATCCTCCTCGAGCCAGAGCAG
CAACGGCAGTCAAAGCAGCAGGGACGGTAGCAATCAGCAGCATGGCATGA
TGAGGACGAGCCGCCACCCTCAAGAAATAGCGGCGATGGCTCTCTGGGCC
AGAGGACCACAACGGGCAATGACGATGTCACAATCACCACCACACGCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGGCAGCGGGCATTCAGATTGTTGGA
TTTCGATTGGGCGCTGTCGGCATTGTGAGAGAGGGGTCTGTAAGACTTGC
CTAAGGGACTGTGAGGCGTGTCGTGAGACGTTTTGCTCGTTGTGCTCGAC
AGTGGATTATGGTGGGGCCTTTGAAAAGGTGGTGTGTATCGATTGTGGTA
AGAGGCTGGCGATCACAGCAGCAGCAGCCGCCGCAGCAGCAGTACCAAGG
GGAGGGCAAGAAATGGATTTGTCTTAA
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Synonyms
Publications