NO08G03280.1, NO08G03280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03280.1
Unique NameNO08G03280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2793
Alignment locationchr8:902203..905528 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:902203..905528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03280.1 vs.
Match: EWM26802.1 (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 7.600e-100
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 
Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 182
            MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK
Sbjct:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
The following BLAST results are available for this feature:
BLAST of NO08G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26802.17.600e-100100.00adp-ribosylation factor [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03280NO08G03280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03280.1NO08G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03280.1.cds1NO08G03280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03280.1.cds2NO08G03280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03280.1.cds3NO08G03280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03280.1.cds4NO08G03280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03280.1 ID=NO08G03280.1|Name=NO08G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2793bp
GGGTCTATTCGCTACATTTCGTTCTCAGGCAACACGGCGAGACAAGGGCA
GCGAGCGTAGACGGACTTGCGGGCAGACCGACGGGCTTTTCTTCTGCTGC
GGTCAGGAGCGAGGAGTGCCTCACCCACCACCATCCTCGTCTACGACACC
CTCTTTTGTAGGGTTTACCTTTCAGACTTGATGCGTCTGTAAGCCTGTTC
TAGTTATCCTCCCGCTATCCTCCATGCAGTCGAAAAGCTTTTTCCCATCG
CTGCCTCCCCCCCCTCCCTCAATGCACCCTTTTATCACGCCCTTTAAGGC
CCTTTGGCCTCGTCCTCCCGCTCACAGTTGTCCTTATTTTGATGTAGCTT
GCGCCATTATGGTAGCAGCACGTGCATCTTTTTTCTGGTTTCGGTCTCAT
TCAAGGCGCAGGGAGGAGCGGTGGGCATGACTGAGATGCAGACTTGCCCC
ATGCGGGGGTGGATGGGAAGCCCCTAATACAAAACGCAAACGAAATAGGT
AGAGAGCAACATGGGGAGGTGTTTTGGCCAACAATTACGGCTCGGATCGG
TTGTTACGAAGAGCCACATACGAAAAAAGGGACAAATGCTGATATGCTGG
TCCGTAGGAATAAATCAATGCATGACCTCACTCGACTCAAAGCCACAAAA
AAAGATGTAACACCACCATTTCTTGTTACTTTCTGATGAAAAGAGAGTGT
TCCAAGCTTTCAATAAATGATGCGGTCGTTTCGCCCACTCTCTCGTCATC
ATGGGTGTCTCTCCCGCTTGTTTGAGTGTTGTCGGACCCTTCTTCTCCTT
GTGCATACAATCCTGCGTACTTCTCCCTTTCGACCTGTGCATCGATTACC
CTTGTTGAGATTCTGGATTCTGCCCGAGCCGCGGGGCTCGTGCTCGTCGC
CCACAAAACAAACGAGGCCCCTTAGTTGGCGAAGGGCATCAGGGTAAAAG
GAAAAAGACCAGGGCGGAGGAGGGTAACAACCGCACAAACCCACACATGA
ACAGGTGCACCTACGACCACGCTACCGACAGGTCCCACCGCACTCATCGT
TGCTTTCTGAAAGGCCTGAGACGTATGGCGGCGGCGCTTGGGGCGTGTGT
CTGGAGCATGGCCGGTCCGTTGCGATGGTGCTTGGCGATGAGGAAAGGAG
ACAGGAGCGTCTCCCGTCTCCACTTCTATGGCCGCCCGGGCAGCTGCTTG
GGCCATAACACCATGCTGGCATAACCTCCGTAGCGAAGGATTATGGCAAG
CGGGCCAGGCGCAGAGAGTGTGGCTTGCGCCCTGGGTTGCGGGGGTGTTT
GTGGGAGGCAGCAGAACGGGCACTGACGAAGACGTTAGTGTTCGTGGCGT
GGTCCATATCGATCGACATGCCCGTACTTCGGGAGGCGCGCGTTGTCTGA
ACCAGCTTCCCACCTCTGTTCTAACGCACTTTTTTGTGCTTGTAGTTGTG
GTGCTCCTGGTTGTCTTGGCGCATGTATTTCAAACAGGAGCGTTTCCCCT
CCACTCTCACCCTCCCCTCTTCCTTCTTCTCATCCCAATTCACAAAACAC
AACAAAGGCAAGCATGGGGTTAACATTCTCCCGGATTTGGGAGCGCATGT
TTGGGAAGAAGGAGATGCGCATTTTGATGGTCGGTCTCGATGCAGCAGGG
AAGACAACTATTCTCTACAAGCTTAAGCTGGGCGAGGTCGTCACCACCAT
CCCTACCATTGGGTTCAACGTTGAGACGGTAGAGTACAAGAACATTTCCT
TCACTGTTTGGGACGTCGGGGGACAAGACAAGATCCGCCCCTTGTGGAGG
CACTACTACCAAAACACCCAAGGCTTGATTTTTGTGGTGGACTCGAATGA
TAGGGACCGTGTCGATGCGGCGCGCGACGAACTGCACCGCATGCTGAACG
AGGACGAGCTTCGGGACTCCATCCTCCTGGTGTTTGCCAATAAGCAAGAC
TTGCCCCAGGCCATGAATGCCGCAGAGATGACGGATAAATTGGGCCTGTC
TTCCTTGCGTCACCGACAGTGGTACATCCAGGCCTGCTGCGCCACGAGCG
GGGATGGCTTGTATGAAGGCTTGGACTGGCTTTCAGCGGCCTTGCAGAAA
CGGAAGTAGAGGATGGCATTAGTGAGGAGGAAGGGAAGTGATGAATGAGG
GCCAGGTCATTCACCGGTTTTAATCACACCTGTTGGGGGTTAGGTGGGTT
GATGGATGGGTGGGGTCGTCGATTTTTCGATTGTACCTTATTTCACCGTA
CGGCCCTCCATGTTCTCCTTGCCTTTCCTTTCTTCATTCACACAACATAT
ACCGTGCAACAACAAAAAAGAAACGGAGGCAATTGGCGCTACTTTCAAAA
AATCAAAAAACAAACATTCGTTTTATTTTATTTTAGTTCTCCCCTCCCGT
GAGTCCAACAAATTGGAGGCGACGCCTGCGCATATATCGAAACACAAAGA
AAGGTGGAGAAGTGGGACGGAGGAGAGGAGTGGTGTACGGAAGCCGAAAG
TCTAGCGAGAAAAGAGCGAAGGGAAGAAACGACGAAGAAGAATGGGTCCC
TTTATTTTGTGGATGATGAAAAGAAAAAAAGACGAAGGAGAATTAAAGAA
GGAAGCGAGGAGGTGGAGAAAGTGCACTATTGTGCCCCTCTGTAGTTTAA
TCATTTTTTATCGTAAGATTGTGGGCTAAGAGGCTAGAAAAAGGGGCCTA
GGGGAGGCGCGTATGTGCGCGGGGGAAAGGAAAAAAAGTCACCGAGAGTA
GGACACGTGAGATACTCATCCCAGGATGCTCTTTATCATATTC
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protein sequence of NO08G03280.1

>NO08G03280.1-protein ID=NO08G03280.1-protein|Name=NO08G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRV
DAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRH
RQWYIQACCATSGDGLYEGLDWLSAALQKRK*
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mRNA from alignment at chr8:902203..905528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03280.1 ID=NO08G03280.1|Name=NO08G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3326bp|location=Sequence derived from alignment at chr8:902203..905528+ (Nannochloropsis oceanica)
GGGTCTATTCGCTACATTTCGTTCTCAGGCAACACGGCGAGACAAGGGCA
GCGAGCGTAGACGGACTTGCGGGCAGACCGACGGGCTTTTCTTCTGCTGC
GGTCAGGAGCGAGGAGTGCCTCACCCACCACCATCCTCGTCTACGACACC
CTCTTTTGTAGGGTTTACCTTTCAGACTTGATGCGTCTGTAAGCCTGTTC
TAGTTATCCTCCCGCTATCCTCCATGCAGTCGAAAAGCTTTTTCCCATCG
CTGCCTCCCCCCCCTCCCTCAATGCACCCTTTTATCACGCCCTTTAAGGC
CCTTTGGCCTCGTCCTCCCGCTCACAGTTGTCCTTATTTTGATGTAGCTT
GCGCCATTATGGTAGCAGCACGTGCATCTTTTTTCTGGTTTCGGTCTCAT
TCAAGGCGCAGGGAGGAGCGGTGGGCATGACTGAGATGCAGACTTGCCCC
ATGCGGGGGTGGATGGGAAGCCCCTAATACAAAACGCAAACGAAATAGGT
AGAGAGCAACATGGGGAGGTGTTTTGGCCAACAATTACGGCTCGGATCGG
TTGTTACGAAGAGCCACATACGAAAAAAGGGACAAATGCTGATATGCTGG
TCCGTAGGAATAAATCAATGCATGACCTCACTCGACTCAAAGCCACAAAA
AAAGATGTAACACCACCATTTCTTGTTACTTTCTGATGAAAAGAGAGTGT
TCCAAGCTTTCAATAAATGATGCGGTCGTTTCGCCCACTCTCTCGTCATC
ATGGGTGTCTCTCCCGCTTGTTTGAGTGTTGTCGGACCCTTCTTCTCCTT
GTGCATACAATCCTGCGTACTTCTCCCTTTCGACCTGTGCATCGATTACC
CTTGTTGAGATTCTGGATTCTGCCCGAGCCGCGGGGCTCGTGCTCGTCGC
CCACAAAACAAACGAGGCCCCTTAGTTGGCGAAGGGCATCAGGGTAAAAG
GAAAAAGACCAGGGCGGAGGAGGGTAACAACCGCACAAACCCACACATGA
ACAGGTGCACCTACGACCACGCTACCGACAGGTCCCACCGCACTCATCGT
TGCTTTCTGAAAGGCCTGAGACGTATGGCGGCGGCGCTTGGGGCGTGTGT
CTGGAGCATGGCCGGTCCGTTGCGATGGTGCTTGGCGATGAGGAAAGGAG
ACAGGAGCGTCTCCCGTCTCCACTTCTATGGCCGCCCGGGCAGCTGCTTG
GGCCATAACACCATGCTGGCATAACCTCCGTAGCGAAGGATTATGGCAAG
CGGGCCAGGCGCAGAGAGTGTGGCTTGCGCCCTGGGTTGCGGGGGTGTTT
GTGGGAGGCAGCAGAACGGGCACTGACGAAGACGTTAGTGTTCGTGGCGT
GGTCCATATCGATCGACATGCCCGTACTTCGGGAGGCGCGCGTTGTCTGA
ACCAGCTTCCCACCTCTGTTCTAACGCACTTTTTTGTGCTTGTAGTTGTG
GTGCTCCTGGTTGTCTTGGCGCATGTATTTCAAACAGGAGCGTTTCCCCT
CCACTCTCACCCTCCCCTCTTCCTTCTTCTCATCCCAATTCACAAAACAC
AACAAAGGCAAGCATGGGGTTAACATTCTCCCGGATTTGGGAGCGCATGT
TTGGGAAGAAGGAGATGCGCATTTTGATGGTCGGTCTCGATGCAGCAGGG
AAGACAACTATTCTCTACAAGCTTAAGCTGGGCGAGGTCGTCACCACCAT
CCCTACCATTGGGTAAGTCCCCTGAATGCTTTGAGTCGTACATTGGAAGA
TGTGGCATTAGACGTGCGAAAAAAGGACTCCGGTTCAATCATAGGCATCT
CTTTCCTGCTTGAATTTTGGTCTTGGCCACGCTTGAGCCATTCCCTCACA
ACACCCGTCCTTCCTCCCTCCCCTCCCCGTTTTAGGTTCAACGTTGAGAC
GGTAGAGTACAAGAACATTTCCTTCACTGTTTGGGACGTCGGGGGACAAG
ACAAGATCCGCCCCTTGTGGAGGCACTACTACCAAAACACCCAAGGCTTG
ATTTTTGTGGTGGACTCGAATGATAGGGACCGTGTCGATGCGGGTACGTA
GCGGGGGAAATGAGGAAGAGCGGGGGAGAGAACTTTTGTGATTGTTTTTT
TCGCGATGGCACTTTCACTAGTATCAGAGAGCCCATAATTTTGGTCAGAC
AATCTTTCTCGTATCTCATCAATCCCCCCCTCCCTCTATTCCCTACAGCG
CGCGACGAACTGCACCGCATGCTGAACGAGGACGAGCTTCGGGACTCCAT
CCTCCTGGTGTTTGCCAATAAGCAAGACTTGCCCCAGGCCATGAATGCCG
CAGAGATGACGGATAAATTGGGCCTGTCTTCCTTGCGTCACCGACAGTGG
TACATCCAGGTACGTCAATTGTCTTTGCACAGTGAGCAAAGGCAAGAGTG
TAATGGGAAAAAGAAGGGGAGATGTTTAGATGAACGGAGATAATTAAGTA
AATATGTGTGAGACGCGTCTTGATACAGAGACGCGCTGATTTCACACTGT
CCTCTAATCAATCCCTCCCCCCCATCCCTCTTACTCTTTTTTCTACCCTT
CTCTCCACACGCAGGCCTGCTGCGCCACGAGCGGGGATGGCTTGTATGAA
GGCTTGGACTGGCTTTCAGCGGCCTTGCAGAAACGGAAGTAGAGGATGGC
ATTAGTGAGGAGGAAGGGAAGTGATGAATGAGGGCCAGGTCATTCACCGG
TTTTAATCACACCTGTTGGGGGTTAGGTGGGTTGATGGATGGGTGGGGTC
GTCGATTTTTCGATTGTACCTTATTTCACCGTACGGCCCTCCATGTTCTC
CTTGCCTTTCCTTTCTTCATTCACACAACATATACCGTGCAACAACAAAA
AAGAAACGGAGGCAATTGGCGCTACTTTCAAAAAATCAAAAAACAAACAT
TCGTTTTATTTTATTTTAGTTCTCCCCTCCCGTGAGTCCAACAAATTGGA
GGCGACGCCTGCGCATATATCGAAACACAAAGAAAGGTGGAGAAGTGGGA
CGGAGGAGAGGAGTGGTGTACGGAAGCCGAAAGTCTAGCGAGAAAAGAGC
GAAGGGAAGAAACGACGAAGAAGAATGGGTCCCTTTATTTTGTGGATGAT
GAAAAGAAAAAAAGACGAAGGAGAATTAAAGAAGGAAGCGAGGAGGTGGA
GAAAGTGCACTATTGTGCCCCTCTGTAGTTTAATCATTTTTTATCGTAAG
ATTGTGGGCTAAGAGGCTAGAAAAAGGGGCCTAGGGGAGGCGCGTATGTG
CGCGGGGGAAAGGAAAAAAAGTCACCGAGAGTAGGACACGTGAGATACTC
ATCCCAGGATGCTCTTTATCATATTC
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Coding sequence (CDS) from alignment at chr8:902203..905528+

>NO08G03280.1 ID=NO08G03280.1|Name=NO08G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr8:902203..905528+ (Nannochloropsis oceanica)
ATGGGGTTAACATTCTCCCGGATTTGGGAGCGCATGTTTGGGAAGAAGGA
GATGCGCATTTTGATGGTCGGTCTCGATGCAGCAGGGAAGACAACTATTC
TCTACAAGCTTAAGCTGGGCGAGGTCGTCACCACCATCCCTACCATTGGG
TTCAACGTTGAGACGGTAGAGTACAAGAACATTTCCTTCACTGTTTGGGA
CGTCGGGGGACAAGACAAGATCCGCCCCTTGTGGAGGCACTACTACCAAA
ACACCCAAGGCTTGATTTTTGTGGTGGACTCGAATGATAGGGACCGTGTC
GATGCGGCGCGCGACGAACTGCACCGCATGCTGAACGAGGACGAGCTTCG
GGACTCCATCCTCCTGGTGTTTGCCAATAAGCAAGACTTGCCCCAGGCCA
TGAATGCCGCAGAGATGACGGATAAATTGGGCCTGTCTTCCTTGCGTCAC
CGACAGTGGTACATCCAGGCCTGCTGCGCCACGAGCGGGGATGGCTTGTA
TGAAGGCTTGGACTGGCTTTCAGCGGCCTTGCAGAAACGGAAGTAG
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Synonyms
Publications