|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:883558..886115 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03220.1 vs.
Match: EWM26830.1 (hypothetical protein Naga_100018g4 [Nannochloropsis gaditana]) HSP 1 Score: 241.9 bits (616), Expect = 4.700e-60 Identity = 165/392 (42.09%), Postives = 226/392 (57.65%), Query Frame = 0
Query: 188 RQYIAEEILTLKCPREGCRRAFLDFDGCFALTCPGCGCAFCAACIEDCGDDAHEHCNVVHQGLFGTLDKFNEIQGHRRLVAVTRYLTEVVCVHESRGWVEERLLGPGGALEKDLGEVGIRVQEVKRSLAGEYFLPFGAGGDKGGGGVGKALAVRLGAADDGEQEQQQEQEQEEGLAARQRRRLGELFLKRQGYVATEKDAVSRFLGTVVTASLIVVGVWRLTDVADSTSSTRDRSSSDNEEWGVES-TRLIGGAMLGPAMVLLLTGRGNQLIQSLRIALLTALIVIPLFYFSEPLITFVVMILVNVLSVTAHILGMLLDLCVEGARLSKIMLSNLSIEVAALY----------------------GLPGVKETLSTVGLLPPVELGLETATS 557
RQ+IAEEILTLKCPR+GCRRAFLDFDGCFALTCP CGC FCAACIEDCGDDAH HC VH G+FGTL++FN+IQ RRLV VT YL + + ES +V ++L G + +DL +VGI+V+EVK+ L G G+ ++ + A+ + +Q +R RRL L GY A E D SR LG + T LI+ GV L S S D + + T+L G M P LLLTGRG QL+QS +A LTA++ +PL Y+S L+ +++ LV++LSV AHI+G L+D+ VE +RL++++LS L +++ + L + + L ++GLLPP ++ L AT+
Sbjct: 5 RQHIAEEILTLKCPRKGCRRAFLDFDGCFALTCPRCGCGFCAACIEDCGDDAHNHCRDVHYGVFGTLERFNDIQRKRRLVGVTEYL-KWISQQESPAFV-SKVLESRGPVSQDLADVGIQVEEVKKVLNG-----------------GQVPSLDMNASIGLFSTRNHTNDQ--SWISRWLRRL----LDGPGY-APEDDITSRLLGNITTGMLILAGVHGL---VGSPSHDTDAPYGYGMWYFLGGMTKLFYGLMAAPPACLLLTGRGKQLLQSAHVAFLTAVVFLPL-YYSADLLPTLILCLVSILSVIAHIIGFLVDVLVECSRLAQLLLSELWTKLSQMSSFATNAFNRSTLWPCYRRIAEDALFNIVKNLRSIGLLPPADVELRIATA 366
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03220.1 ID=NO08G03220.1|Name=NO08G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp TGTTGCATCTATTTCCGAGGCTCATCGGCAAACAGCAGGCCCATCTGGCT GTTCGCAGTCCTCCACCTAGGGAAAACGCCTGAGGCTTCCCTCTGCTGCG ACTGATACGACTGGGCAAGACCAGGCAAGCTCCAGGCTTTATATTACTCA CACATCAAATATCCCTCTTCATCTTGTCGACTTATCCCACCAACGAAGCC CCCTCAAAACCATACGACATACAGGGACTCGCCACCTCGGCTCGCGCGTT CCACAAGGGAGGACCCCTCCGTCTTCATACTGTCAATACCCCTGGGGCAG AGAAATCCTAGACCTCGCATATACCTACCACCCAGCCAGCGGGGACACAA TTATGGTGCGGCCGCTTGTCCCTCCCATCCCCTTAGCTGCCCCTACTTCT GCCCCCACTGGCGACCCTCCAGACGATGCGCGATGCCGAAGCCCCATGTC TAATTCCAGGTCCTCCGCGCCTGTTTTCCTTAGTCCCGCGGGTAAACCCT GCGTGATCTGTTTCGACATGGAGCGGGATGGCGTAGTGTGCAGTGGTACC GAGAATCACTTCGTTTGCCGCGGATGTCTGCAGGGCTTCATCCGCAACCT CGAGCCCATTACCATCCGTCGTTCGGGCGGTTGTGTCAGCTGTCCTGCCA TTGAAGAAAGCACAGGCCACGCTTGTGACGCGGACCCCTGGAGTTACGAT GACCTCGTCAACCTTCTCGATCCAAGTACCCAGCGCATGTACGTCCAGCG ACTCGAGGGATTATTAGCCAGTGTTTTATCAGCCGAGACGGCCATCACGG GGAAGGCTCCCCGTTCCCCCTATCGAGGCAGTATTGGGGGTGGGCGACGT TCCCGGTCCGTGAGTCCCCTCCCCCTCTCCTCCTCCTCCGATCATGACAA AATACAAGGATATCGCCAATACATTGCTGAAGAAATTTTGACACTGAAGT GCCCCAGAGAAGGGTGTCGTCGAGCTTTCTTGGATTTTGATGGATGTTTT GCGTTGACCTGCCCTGGGTGTGGGTGTGCTTTTTGTGCGGCCTGCATAGA GGATTGTGGGGACGATGCCCACGAACACTGCAACGTGGTCCACCAGGGGT TATTTGGGACTTTGGACAAATTTAATGAGATACAGGGGCACAGGCGATTG GTGGCCGTGACGAGATACTTGACGGAGGTGGTGTGTGTGCACGAGTCGAG GGGATGGGTGGAGGAAAGGTTGCTTGGGCCAGGGGGGGCGTTGGAGAAGG ATTTGGGGGAGGTGGGTATAAGGGTACAGGAGGTAAAGCGCTCACTTGCG GGGGAGTATTTTTTGCCTTTCGGTGCGGGAGGTGATAAAGGCGGCGGTGG TGTTGGCAAGGCTCTCGCTGTTCGGTTGGGGGCGGCTGATGATGGCGAGC AGGAGCAGCAGCAGGAGCAGGAGCAGGAAGAGGGTTTAGCTGCTCGACAG CGGCGGCGGCTCGGGGAGCTGTTCTTGAAAAGACAAGGGTATGTAGCGAC AGAGAAAGATGCAGTCTCCCGATTCTTGGGTACGGTAGTGACGGCCTCCC TGATCGTGGTGGGTGTGTGGCGGTTGACTGATGTGGCCGACAGCACCAGC AGTACCCGCGACCGCAGCAGCAGTGATAATGAGGAATGGGGAGTGGAGAG CACGCGATTGATTGGGGGAGCGATGCTGGGACCAGCAATGGTGTTACTGC TGACGGGGAGGGGAAATCAGCTTATACAATCGTTGAGAATTGCCTTGCTC ACGGCTTTGATAGTTATCCCTCTTTTCTATTTCTCCGAGCCTTTGATTAC GTTTGTAGTGATGATTTTGGTGAATGTCCTATCGGTGACAGCGCATATTC TGGGGATGCTTCTAGATCTTTGTGTGGAGGGAGCGCGGCTCTCCAAAATT ATGCTGTCGAATTTATCTATTGAGGTTGCAGCACTGTACGGGCTGCCAGG AGTGAAGGAGACGTTGAGTACTGTGGGTCTGCTGCCACCGGTTGAACTGG GGTTGGAGACAGCCACGTCTTGATGAAAAGAAGGAGAGGACGGGAAATAG GGGGAGGGTGATAAAAAGTGTGGCATAAGGGAAGGGTAAATGTGTCTTTG TTTAAGTGCATGCATGCCTGCAGGCCCGCACGGGCTGTAAAAAGAGTGAG ATGTAGATTATTTATTGGATGACGGCATCACATGCGAAGGCCGGTTAAAT GTAGCTTTATAATATTGAAGAACTATAAGCAATTTTTGACTTTTCGAAA back to topprotein sequence of NO08G03220.1 >NO08G03220.1-protein ID=NO08G03220.1-protein|Name=NO08G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp MVRPLVPPIPLAAPTSAPTGDPPDDARCRSPMSNSRSSAPVFLSPAGKPC VICFDMERDGVVCSGTENHFVCRGCLQGFIRNLEPITIRRSGGCVSCPAI EESTGHACDADPWSYDDLVNLLDPSTQRMYVQRLEGLLASVLSAETAITG KAPRSPYRGSIGGGRRSRSVSPLPLSSSSDHDKIQGYRQYIAEEILTLKC PREGCRRAFLDFDGCFALTCPGCGCAFCAACIEDCGDDAHEHCNVVHQGL FGTLDKFNEIQGHRRLVAVTRYLTEVVCVHESRGWVEERLLGPGGALEKD LGEVGIRVQEVKRSLAGEYFLPFGAGGDKGGGGVGKALAVRLGAADDGEQ EQQQEQEQEEGLAARQRRRLGELFLKRQGYVATEKDAVSRFLGTVVTASL IVVGVWRLTDVADSTSSTRDRSSSDNEEWGVESTRLIGGAMLGPAMVLLL TGRGNQLIQSLRIALLTALIVIPLFYFSEPLITFVVMILVNVLSVTAHIL GMLLDLCVEGARLSKIMLSNLSIEVAALYGLPGVKETLSTVGLLPPVELG LETATS* back to topmRNA from alignment at chr8:883558..886115+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03220.1 ID=NO08G03220.1|Name=NO08G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2558bp|location=Sequence derived from alignment at chr8:883558..886115+ (Nannochloropsis oceanica) TGTTGCATCTATTTCCGAGGCTCATCGGCAAACAGCAGGCCCATCTGGCT
GTTCGCAGTCCTCCACCTAGGGAAAACGCCTGAGGCTTCCCTCTGCTGCG
ACTGATACGACTGGGCAAGACCAGGCAAGCTCCAGGCTTTATATTACTCA
CACATCAAATATCCCTCTTCATCTTGTCGACTTATCCCACCAACGAAGCC
CCCTCAAAACCATACGACATACAGGGACTCGCCACCTCGGCTCGCGCGTT
CCACAAGGGAGGACCCCTCCGTCTTCATACTGTCAATACCCCTGGGGCAG
AGAAATCCTAGACCTCGCATATACCTACCACCCAGCCAGCGGGGACACAA
TTATGGTGCGGCCGCTTGTCCCTCCCATCCCCTTAGCTGCCCCTACTTCT
GCCCCCACTGGCGACCCTCCAGACGATGCGCGATGCCGAAGCCCCATGTC
TAATTCCAGGTCCTCCGCGCCTGTTTTCCTTAGTCCCGCGGGTAAACCCT
GCGTGATCTGTTTCGACATGGAGCGGGATGGCGTAGTGTGCAGTGGTACC
GAGAATCACTTCGTTTGCCGCGGATGTCTGCAGGTACGTTGTCTGGGGTC
GGATGGTCTGAGGGGGGTGGATGGAACAACTGGAATCGAATGGACGCATT
TATACATATAATTTGCATCGTCAAGTCTATAGCTTGTATATTTGATTATG
ATGATGCCCTAACAGTGTGCACTCCGGTTTTCTTCCTTTTGGGAGGCAAG
AAAATATACCCGACTCTATTACCCACCTGCACACCCTATTCCGCCACACG
AATGAACGTCTCCAAGTACAACCGCTCCACCATCAAAATCCGCCTTCTGA
CCCTGTCCATCCCTGCATCTATCCCACCGTACATATATGTAGGGCTTCAT
CCGCAACCTCGAGCCCATTACCATCCGTCGTTCGGGCGGTTGTGTCAGCT
GTCCTGCCATTGAAGAAAGCACAGGCCACGCTTGTGACGCGGACCCCTGG
AGTTACGATGACCTCGTCAACCTTCTCGATCCAAGTACCCAGCGCATGTA
CGTCCAGCGACTCGAGGGATTATTAGCCAGTGTTTTATCAGCCGAGACGG
CCATCACGGGGAAGGCTCCCCGTTCCCCCTATCGAGGCAGTATTGGGGGT
GGGCGACGTTCCCGGTCCGTGAGTCCCCTCCCCCTCTCCTCCTCCTCCGA
TCATGACAAAATACAAGGATATCGCCAATACATTGCTGAAGAAATTTTGA
CACTGAAGTGCCCCAGAGAAGGGTGTCGTCGAGCTTTCTTGGATTTTGAT
GGATGTTTTGCGTTGACCTGCCCTGGGTGTGGGTGTGCTTTTTGTGCGGC
CTGCATAGAGGATTGTGGGGACGATGCCCACGAACACTGCAACGTGGTCC
ACCAGGGGTTATTTGGGACTTTGGACAAATTTAATGAGATACAGGGGCAC
AGGCGATTGGTGGCCGTGACGAGATACTTGACGGAGGTGGTGTGTGTGCA
CGAGTCGAGGGGATGGGTGGAGGAAAGGTTGCTTGGGCCAGGGGGGGCGT
TGGAGAAGGATTTGGGGGAGGTGGGTATAAGGGTACAGGAGGTAAAGCGC
TCACTTGCGGGGGAGTATTTTTTGCCTTTCGGTGCGGGAGGTGATAAAGG
CGGCGGTGGTGTTGGCAAGGCTCTCGCTGTTCGGTTGGGGGCGGCTGATG
ATGGCGAGCAGGAGCAGCAGCAGGAGCAGGAGCAGGAAGAGGGTTTAGCT
GCTCGACAGCGGCGGCGGCTCGGGGAGCTGTTCTTGAAAAGACAAGGGTA
TGTAGCGACAGAGAAAGATGCAGTCTCCCGATTCTTGGGTACGGTAGTGA
CGGCCTCCCTGATCGTGGTGGGTGTGTGGCGGTTGACTGATGTGGCCGAC
AGCACCAGCAGTACCCGCGACCGCAGCAGCAGTGATAATGAGGAATGGGG
AGTGGAGAGCACGCGATTGATTGGGGGAGCGATGCTGGGACCAGCAATGG
TGTTACTGCTGACGGGGAGGGGAAATCAGCTTATACAATCGTTGAGAATT
GCCTTGCTCACGGCTTTGATAGTTATCCCTCTTTTCTATTTCTCCGAGCC
TTTGATTACGTTTGTAGTGATGATTTTGGTGAATGTCCTATCGGTGACAG
CGCATATTCTGGGGATGCTTCTAGATCTTTGTGTGGAGGGAGCGCGGCTC
TCCAAAATTATGCTGTCGAATTTATCTATTGAGGTTGCAGCACTGTACGG
GCTGCCAGGAGTGAAGGAGACGTTGAGTACTGTGGGTCTGCTGCCACCGG
TTGAACTGGGGTTGGAGACAGCCACGTCTTGATGAAAAGAAGGAGAGGAC
GGGAAATAGGGGGAGGGTGATAAAAAGTGTGGCATAAGGGAAGGGTAAAT
GTGTCTTTGTTTAAGTGCATGCATGCCTGCAGGCCCGCACGGGCTGTAAA
AAGAGTGAGATGTAGATTATTTATTGGATGACGGCATCACATGCGAAGGC
CGGTTAAATGTAGCTTTATAATATTGAAGAACTATAAGCAATTTTTGACT
TTTCGAAA back to topCoding sequence (CDS) from alignment at chr8:883558..886115+ >NO08G03220.1 ID=NO08G03220.1|Name=NO08G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr8:883558..886115+ (Nannochloropsis oceanica) ATGGTGCGGCCGCTTGTCCCTCCCATCCCCTTAGCTGCCCCTACTTCTGC CCCCACTGGCGACCCTCCAGACGATGCGCGATGCCGAAGCCCCATGTCTA ATTCCAGGTCCTCCGCGCCTGTTTTCCTTAGTCCCGCGGGTAAACCCTGC GTGATCTGTTTCGACATGGAGCGGGATGGCGTAGTGTGCAGTGGTACCGA GAATCACTTCGTTTGCCGCGGATGTCTGCAGGGCTTCATCCGCAACCTCG AGCCCATTACCATCCGTCGTTCGGGCGGTTGTGTCAGCTGTCCTGCCATT GAAGAAAGCACAGGCCACGCTTGTGACGCGGACCCCTGGAGTTACGATGA CCTCGTCAACCTTCTCGATCCAAGTACCCAGCGCATGTACGTCCAGCGAC TCGAGGGATTATTAGCCAGTGTTTTATCAGCCGAGACGGCCATCACGGGG AAGGCTCCCCGTTCCCCCTATCGAGGCAGTATTGGGGGTGGGCGACGTTC CCGGTCCGTGAGTCCCCTCCCCCTCTCCTCCTCCTCCGATCATGACAAAA TACAAGGATATCGCCAATACATTGCTGAAGAAATTTTGACACTGAAGTGC CCCAGAGAAGGGTGTCGTCGAGCTTTCTTGGATTTTGATGGATGTTTTGC GTTGACCTGCCCTGGGTGTGGGTGTGCTTTTTGTGCGGCCTGCATAGAGG ATTGTGGGGACGATGCCCACGAACACTGCAACGTGGTCCACCAGGGGTTA TTTGGGACTTTGGACAAATTTAATGAGATACAGGGGCACAGGCGATTGGT GGCCGTGACGAGATACTTGACGGAGGTGGTGTGTGTGCACGAGTCGAGGG GATGGGTGGAGGAAAGGTTGCTTGGGCCAGGGGGGGCGTTGGAGAAGGAT TTGGGGGAGGTGGGTATAAGGGTACAGGAGGTAAAGCGCTCACTTGCGGG GGAGTATTTTTTGCCTTTCGGTGCGGGAGGTGATAAAGGCGGCGGTGGTG TTGGCAAGGCTCTCGCTGTTCGGTTGGGGGCGGCTGATGATGGCGAGCAG GAGCAGCAGCAGGAGCAGGAGCAGGAAGAGGGTTTAGCTGCTCGACAGCG GCGGCGGCTCGGGGAGCTGTTCTTGAAAAGACAAGGGTATGTAGCGACAG AGAAAGATGCAGTCTCCCGATTCTTGGGTACGGTAGTGACGGCCTCCCTG ATCGTGGTGGGTGTGTGGCGGTTGACTGATGTGGCCGACAGCACCAGCAG TACCCGCGACCGCAGCAGCAGTGATAATGAGGAATGGGGAGTGGAGAGCA CGCGATTGATTGGGGGAGCGATGCTGGGACCAGCAATGGTGTTACTGCTG ACGGGGAGGGGAAATCAGCTTATACAATCGTTGAGAATTGCCTTGCTCAC GGCTTTGATAGTTATCCCTCTTTTCTATTTCTCCGAGCCTTTGATTACGT TTGTAGTGATGATTTTGGTGAATGTCCTATCGGTGACAGCGCATATTCTG GGGATGCTTCTAGATCTTTGTGTGGAGGGAGCGCGGCTCTCCAAAATTAT GCTGTCGAATTTATCTATTGAGGTTGCAGCACTGTACGGGCTGCCAGGAG TGAAGGAGACGTTGAGTACTGTGGGTCTGCTGCCACCGGTTGAACTGGGG TTGGAGACAGCCACGTCTTGA back to top
|