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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:878534..881186 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03200.1 vs.
Match: EWM26836.1 (d-xylose-proton symporter-like protein [Nannochloropsis gaditana]) HSP 1 Score: 707.6 bits (1825), Expect = 3.300e-200 Identity = 405/612 (66.18%), Postives = 458/612 (74.84%), Query Frame = 0
Query: 11 ASAGARTGAVASIFIFCALGGLLFGWDIGATAYVLTQVQSADKAGVAWGERIEANSALRGFFTASAVGGALVGTMIVLQVESWLGRRRELLLASCLYMLGGMTEFGSSFVSNDVGLAICLPGRWVYGGGIAFAMHAAPAYLAEMSPPSIRGLLVAAKEGMIVLGILFAQIAGFHFQDAEGGWRWTFFLSVPLAALMGAGMLRLPPSARWLALQGRWEEAEASLRFFMKCGVGLAMEEIKASMVLEDVRLR---EGGEEEGREEGGSG-ARNQSSSSSSSSNEKKFTRHA-------DKKDA-----KHKPTISQVIRNPRYRRALIVGIGVVTLQQISGQPSVLYFCNEILRDFGLSDSATLLVGLFKLIATMGTVFTVDRYGRRTLLLTGIAVMLVALALLTTAFAFDKEDEVEATGQALDILLIGALFLYIAGYQIGFGPISWILVSEIYPTEVRGETVALAVMANFAFNLVVTFAFDSLRESLGTSATFGLFLGIAAGGWAFVYVLLPETNGLSLEMIEAKFAASALSPFSRWSRGGRVDEVGGRGDEREGLLAWFHRRV-----CATSGREQQQQQQQPAAVVAAAAGAGGGATQMFIESLLPVEKLQ 602
+++G RT AV +IFIFCALGGLLFGWDIGATAYVLTQ+QS DKAGVAWGERIE++S LRGFFTASAVGGAL+GT++VLQVE +GRRRELLLA+ LYM+GG EF SSF+S+D GL +CL GRW+YGGGIAFAMHAAPAYLAEMSPP IRG +VA KEGMIVLGIL +Q+AGF F+D EGGWRW FF+SVPL A MG GM RLP SARWLALQGR EEAE SLRFFMK GVGLAMEEIKASM E+ GG+ + G G R S S K T H+ KDA + K TI QV+RN RYRR LIVG+GVVT QQ+SGQPSVLYF NEILRDFGL+DSATLLVG+FKL+ATMG V TVDR GRRTLLL GI VM++ALALL+ FA +KE A GQALD +LI A+FLYIAGYQ+GFGP+SWILVSEIYPTEVRGETV LAVMANF NL+VTFAFD +RES+GTSATFGLFLG+A W FVY+LLPET GL+LEMI A+F + A + SRW G VG EGLL+WFHR V G++Q Q Q A A G TQ FIE LLPVEK Q
Sbjct: 4 STSGMRTCAVIAIFIFCALGGLLFGWDIGATAYVLTQLQS-DKAGVAWGERIESSSVLRGFFTASAVGGALLGTVVVLQVEGSMGRRRELLLAALLYMMGGGFEFASSFLSSDAGLVVCLLGRWIYGGGIAFAMHAAPAYLAEMSPPGIRGFMVALKEGMIVLGILLSQVAGFIFKDMEGGWRWPFFMSVPLGAAMGLGMSRLPSSARWLALQGRLEEAEDSLRFFMKGGVGLAMEEIKASMQDEEEWTEADAAGGDGMDGDAGVLGDGRGMRGSGGDKSEGAKSTHHSLVLDGGEGMKDAWKGKKRKKTTILQVLRNSRYRRPLIVGLGVVTFQQVSGQPSVLYFSNEILRDFGLADSATLLVGVFKLVATMGAVLTVDRRGRRTLLLLGIGVMVLALALLSAMFAVEKEP--GAKGQALDGVLIAAMFLYIAGYQVGFGPVSWILVSEIYPTEVRGETVGLAVMANFGSNLLVTFAFDPVRESIGTSATFGLFLGVAMAAWLFVYMLLPETKGLALEMIGAQFQSFAST--SRWGSG----MVG-----TEGLLSWFHRHVLQGPNTQHGGQQQLAQPQNTPARPAKTLGTRSSVTQTFIEQLLPVEKQQ 601
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03200.1 ID=NO08G03200.1|Name=NO08G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2542bp
GCCGTTGTGCACCGCAACACACGACCCCGCCCTGACCACGCAAGCACACC
CGCATTGTCGAACCATCACCACCTCAGCGAAAAAAACTACAGCATCGACA
ACGTGCTGTGGGTGAAAGTGGACGTCTGCGGCCAGCATTGGCGGAGGAAA
TACGCACTTCATCCTCATCAGCATCACCAAGCTCATCCACGTCATGCCTA
TCACCCAAACACAGGCAAGCGCAACGCGAGAGCACAAAATCCAGCAAACC
CAACCCACGACCTCACGTGCAACGCCAATCCCTGCAAGGCCACGTTAATT
CCCAGATCAGCAAGGACTCGCAGCTTTTCCTGTTTCATTTGCTCAGCCAA
TGCCGTGGCCTAGCGTATGCACGGGAGCCGCTTCCGCTGGCGCTCGGACG
GGTGCAGTGGCCTCCATCTTCATCTTTTGTGCGCTGGGGGGCTTGCTTTT
CGGGTGGGATATTGGGGCGACCGCCTATGTCCTAACTCAGGTCCAGTCCG
CCGACAAGGCGGGCGTCGCATGGGGAGAGCGTATTGAGGCTAATTCTGCC
CTGCGTGGTTTCTTCACAGCTTCAGCAGTTGGTGGCGCCTTAGTGGGCAC
AATGATCGTCCTGCAGGTCGAAAGCTGGCTGGGCCGGCGGCGGGAGTTGC
TGCTGGCATCGTGCTTGTACATGCTCGGAGGAATGACGGAGTTTGGCTCA
AGCTTTGTATCTAATGATGTGGGATTGGCCATATGTTTGCCAGGTCGGTG
GGTGTATGGAGGAGGAATCGCCTTTGCCATGCACGCTGCTCCAGCGTACC
TTGCCGAGATGTCCCCTCCGTCCATACGTGGGCTTCTCGTTGCCGCAAAG
GAGGGTATGATTGTCTTGGGAATTTTGTTCGCCCAAATCGCTGGATTTCA
CTTCCAGGACGCAGAAGGGGGTTGGCGGTGGACCTTTTTTTTGTCCGTGC
CTCTGGCTGCGCTGATGGGGGCGGGCATGCTGAGACTGCCACCGTCGGCT
CGCTGGTTGGCATTGCAGGGACGGTGGGAGGAGGCAGAGGCGAGTCTGAG
GTTTTTCATGAAGTGTGGCGTGGGGCTTGCGATGGAGGAGATTAAGGCCA
GCATGGTGCTGGAAGACGTGCGGCTTCGTGAGGGAGGGGAGGAAGAAGGA
CGAGAGGAGGGAGGGTCTGGGGCCCGTAACCAGAGCAGTAGCAGTAGCAG
CAGCAGTAATGAGAAAAAGTTCACACGACACGCGGATAAGAAAGACGCGA
AGCACAAACCCACCATTTCGCAAGTCATCCGAAACCCCCGCTATCGCCGC
GCCCTCATCGTCGGCATCGGCGTCGTGACCCTCCAACAAATCTCCGGTCA
GCCTTCCGTCCTGTATTTTTGTAATGAGATACTGCGTGATTTCGGCCTTT
CGGATTCTGCTACTCTCCTAGTGGGGCTTTTTAAGCTGATTGCGACCATG
GGGACCGTGTTTACTGTCGATAGGTACGGACGACGCACCCTGTTGCTGAC
AGGCATTGCTGTTATGTTGGTGGCCCTCGCATTGCTCACCACGGCCTTTG
CCTTCGATAAAGAGGACGAAGTAGAGGCGACTGGACAAGCGTTAGATATC
CTCTTAATCGGCGCGCTCTTCCTTTATATCGCCGGCTACCAAATCGGCTT
CGGACCCATTTCTTGGATTCTCGTATCAGAAATCTACCCAACGGAAGTAC
GGGGAGAGACCGTGGCCTTGGCTGTGATGGCAAATTTTGCGTTTAATCTC
GTAGTGACATTTGCGTTTGATTCCCTCAGGGAGTCTTTGGGGACGAGTGC
GACTTTTGGGTTGTTTCTGGGGATAGCAGCGGGGGGATGGGCTTTTGTTT
ATGTATTGTTGCCGGAAACAAATGGATTAAGTCTAGAGATGATTGAGGCA
AAGTTCGCTGCGTCTGCTTTGTCCCCTTTCTCCCGGTGGTCTCGTGGTGG
CCGTGTGGATGAGGTAGGGGGGAGGGGAGATGAGAGAGAGGGTCTGTTGG
CTTGGTTTCACCGGAGGGTGTGCGCCACGTCGGGGCGGGAACAGCAGCAA
CAGCAGCAGCAGCCAGCAGCGGTGGTGGCAGCAGCCGCAGGAGCTGGAGG
AGGGGCTACGCAGATGTTTATTGAGAGCTTGCTGCCGGTGGAGAAGCTAC
AACAACAACAACAACAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAGCAG
TAGCAGCAGGGGTTCAGTCGCAACTCACCCTGTCTTCTGTTGTCATTGAA
GGAGCGATTGTAGACGCCGTCTTGTCCAGATCTCCATGGTGGGGAAAACG
CTGACGTCGACGACAGCAGATGCGATTTGGTGTAAATTTAGAAGTGAACG
TTTGTTGATTAAGAAGGGGAAAGAATAATTTAGTTGGGGGGCGTGCACAG
GGAGAAAAAAACAAAGATATTTATAAGGCCAGGGATGTAAAGAGAGAGAG
ACTCGTAAGAAAGTGTACAGAAATGATTGAATGAGCTGAAGGCGCAACGG
CCAAAAAGCAAGCCTCAAATCGGCCAGCAAATTACACATGCA back to topprotein sequence of NO08G03200.1 >NO08G03200.1-protein ID=NO08G03200.1-protein|Name=NO08G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MPWPSVCTGAASAGARTGAVASIFIFCALGGLLFGWDIGATAYVLTQVQS
ADKAGVAWGERIEANSALRGFFTASAVGGALVGTMIVLQVESWLGRRREL
LLASCLYMLGGMTEFGSSFVSNDVGLAICLPGRWVYGGGIAFAMHAAPAY
LAEMSPPSIRGLLVAAKEGMIVLGILFAQIAGFHFQDAEGGWRWTFFLSV
PLAALMGAGMLRLPPSARWLALQGRWEEAEASLRFFMKCGVGLAMEEIKA
SMVLEDVRLREGGEEEGREEGGSGARNQSSSSSSSSNEKKFTRHADKKDA
KHKPTISQVIRNPRYRRALIVGIGVVTLQQISGQPSVLYFCNEILRDFGL
SDSATLLVGLFKLIATMGTVFTVDRYGRRTLLLTGIAVMLVALALLTTAF
AFDKEDEVEATGQALDILLIGALFLYIAGYQIGFGPISWILVSEIYPTEV
RGETVALAVMANFAFNLVVTFAFDSLRESLGTSATFGLFLGIAAGGWAFV
YVLLPETNGLSLEMIEAKFAASALSPFSRWSRGGRVDEVGGRGDEREGLL
AWFHRRVCATSGREQQQQQQQPAAVVAAAAGAGGGATQMFIESLLPVEKL
QQQQQQQ* back to topmRNA from alignment at chr8:878534..881186+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03200.1 ID=NO08G03200.1|Name=NO08G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2653bp|location=Sequence derived from alignment at chr8:878534..881186+ (Nannochloropsis oceanica)
GCCGTTGTGCACCGCAACACACGACCCCGCCCTGACCACGCAAGCACACC
CGCATTGTCGAACCATCACCACCTCAGCGAAAAAAACTACAGCATCGACA
ACGTGCTGTGGGTGAAAGTGGACGTCTGCGGCCAGCATTGGCGGAGGAAA
TACGCACTTCATCCTCATCAGCATCACCAAGCTCATCCACGTCATGCCTA
TCACCCAAACACAGGCAAGCGCAACGCGAGAGCACAAAATCCAGCAAACC
CAACCCACGACCTCACGTGCAACGCCAATCCCTGCAAGGCCACGTTAATT
CCCAGATCAGCAAGGACTCGCAGCTTTTCCTGTTTCATTTGCTCAGCCAA
TGCCGTGGCCTAGCGTATGCACGGGAGCCGCTTCCGCTGGCGCTCGGACG
GGTGCAGTGGCCTCCATCTTCATCTTTTGTGCGCTGGGGGGCTTGCTTTT
CGGGTGGGATATTGGTGAGTAACTGAAGACGAGAAGAAAGGTAGTGGTTT
GAGAGCAAGGTGGACTGCGACAGGCTGACCCAAACGTTACTCTGCAACCT
TCCCGGCCCCTTTCGTGCACCACAGGGGCGACCGCCTATGTCCTAACTCA
GGTCCAGTCCGCCGACAAGGCGGGCGTCGCATGGGGAGAGCGTATTGAGG
CTAATTCTGCCCTGCGTGGTTTCTTCACAGCTTCAGCAGTTGGTGGCGCC
TTAGTGGGCACAATGATCGTCCTGCAGGTCGAAAGCTGGCTGGGCCGGCG
GCGGGAGTTGCTGCTGGCATCGTGCTTGTACATGCTCGGAGGAATGACGG
AGTTTGGCTCAAGCTTTGTATCTAATGATGTGGGATTGGCCATATGTTTG
CCAGGTCGGTGGGTGTATGGAGGAGGAATCGCCTTTGCCATGCACGCTGC
TCCAGCGTACCTTGCCGAGATGTCCCCTCCGTCCATACGTGGGCTTCTCG
TTGCCGCAAAGGAGGGTATGATTGTCTTGGGAATTTTGTTCGCCCAAATC
GCTGGATTTCACTTCCAGGACGCAGAAGGGGGTTGGCGGTGGACCTTTTT
TTTGTCCGTGCCTCTGGCTGCGCTGATGGGGGCGGGCATGCTGAGACTGC
CACCGTCGGCTCGCTGGTTGGCATTGCAGGGACGGTGGGAGGAGGCAGAG
GCGAGTCTGAGGTTTTTCATGAAGTGTGGCGTGGGGCTTGCGATGGAGGA
GATTAAGGCCAGCATGGTGCTGGAAGACGTGCGGCTTCGTGAGGGAGGGG
AGGAAGAAGGACGAGAGGAGGGAGGGTCTGGGGCCCGTAACCAGAGCAGT
AGCAGTAGCAGCAGCAGTAATGAGAAAAAGTTCACACGACACGCGGATAA
GAAAGACGCGAAGCACAAACCCACCATTTCGCAAGTCATCCGAAACCCCC
GCTATCGCCGCGCCCTCATCGTCGGCATCGGCGTCGTGACCCTCCAACAA
ATCTCCGGTCAGCCTTCCGTCCTGTATTTTTGTAATGAGATACTGCGTGA
TTTCGGCCTTTCGGATTCTGCTACTCTCCTAGTGGGGCTTTTTAAGCTGA
TTGCGACCATGGGGACCGTGTTTACTGTCGATAGGTACGGACGACGCACC
CTGTTGCTGACAGGCATTGCTGTTATGTTGGTGGCCCTCGCATTGCTCAC
CACGGCCTTTGCCTTCGATAAAGAGGACGAAGTAGAGGCGACTGGACAAG
CGTTAGATATCCTCTTAATCGGCGCGCTCTTCCTTTATATCGCCGGCTAC
CAAATCGGCTTCGGACCCATTTCTTGGATTCTCGTATCAGAAATCTACCC
AACGGAAGTACGGGGAGAGACCGTGGCCTTGGCTGTGATGGCAAATTTTG
CGTTTAATCTCGTAGTGACATTTGCGTTTGATTCCCTCAGGGAGTCTTTG
GGGACGAGTGCGACTTTTGGGTTGTTTCTGGGGATAGCAGCGGGGGGATG
GGCTTTTGTTTATGTATTGTTGCCGGAAACAAATGGATTAAGTCTAGAGA
TGATTGAGGCAAAGTTCGCTGCGTCTGCTTTGTCCCCTTTCTCCCGGTGG
TCTCGTGGTGGCCGTGTGGATGAGGTAGGGGGGAGGGGAGATGAGAGAGA
GGGTCTGTTGGCTTGGTTTCACCGGAGGGTGTGCGCCACGTCGGGGCGGG
AACAGCAGCAACAGCAGCAGCAGCCAGCAGCGGTGGTGGCAGCAGCCGCA
GGAGCTGGAGGAGGGGCTACGCAGATGTTTATTGAGAGCTTGCTGCCGGT
GGAGAAGCTACAACAACAACAACAACAGCAGTAGCAGCAGTAGCAGCAGT
AGCAGCAGCAGTAGCAGCAGGGGTTCAGTCGCAACTCACCCTGTCTTCTG
TTGTCATTGAAGGAGCGATTGTAGACGCCGTCTTGTCCAGATCTCCATGG
TGGGGAAAACGCTGACGTCGACGACAGCAGATGCGATTTGGTGTAAATTT
AGAAGTGAACGTTTGTTGATTAAGAAGGGGAAAGAATAATTTAGTTGGGG
GGCGTGCACAGGGAGAAAAAAACAAAGATATTTATAAGGCCAGGGATGTA
AAGAGAGAGAGACTCGTAAGAAAGTGTACAGAAATGATTGAATGAGCTGA
AGGCGCAACGGCCAAAAAGCAAGCCTCAAATCGGCCAGCAAATTACACAT
GCA back to topCoding sequence (CDS) from alignment at chr8:878534..881186+ >NO08G03200.1 ID=NO08G03200.1|Name=NO08G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at chr8:878534..881186+ (Nannochloropsis oceanica)
ATGCCGTGGCCTAGCGTATGCACGGGAGCCGCTTCCGCTGGCGCTCGGAC
GGGTGCAGTGGCCTCCATCTTCATCTTTTGTGCGCTGGGGGGCTTGCTTT
TCGGGTGGGATATTGGGGCGACCGCCTATGTCCTAACTCAGGTCCAGTCC
GCCGACAAGGCGGGCGTCGCATGGGGAGAGCGTATTGAGGCTAATTCTGC
CCTGCGTGGTTTCTTCACAGCTTCAGCAGTTGGTGGCGCCTTAGTGGGCA
CAATGATCGTCCTGCAGGTCGAAAGCTGGCTGGGCCGGCGGCGGGAGTTG
CTGCTGGCATCGTGCTTGTACATGCTCGGAGGAATGACGGAGTTTGGCTC
AAGCTTTGTATCTAATGATGTGGGATTGGCCATATGTTTGCCAGGTCGGT
GGGTGTATGGAGGAGGAATCGCCTTTGCCATGCACGCTGCTCCAGCGTAC
CTTGCCGAGATGTCCCCTCCGTCCATACGTGGGCTTCTCGTTGCCGCAAA
GGAGGGTATGATTGTCTTGGGAATTTTGTTCGCCCAAATCGCTGGATTTC
ACTTCCAGGACGCAGAAGGGGGTTGGCGGTGGACCTTTTTTTTGTCCGTG
CCTCTGGCTGCGCTGATGGGGGCGGGCATGCTGAGACTGCCACCGTCGGC
TCGCTGGTTGGCATTGCAGGGACGGTGGGAGGAGGCAGAGGCGAGTCTGA
GGTTTTTCATGAAGTGTGGCGTGGGGCTTGCGATGGAGGAGATTAAGGCC
AGCATGGTGCTGGAAGACGTGCGGCTTCGTGAGGGAGGGGAGGAAGAAGG
ACGAGAGGAGGGAGGGTCTGGGGCCCGTAACCAGAGCAGTAGCAGTAGCA
GCAGCAGTAATGAGAAAAAGTTCACACGACACGCGGATAAGAAAGACGCG
AAGCACAAACCCACCATTTCGCAAGTCATCCGAAACCCCCGCTATCGCCG
CGCCCTCATCGTCGGCATCGGCGTCGTGACCCTCCAACAAATCTCCGGTC
AGCCTTCCGTCCTGTATTTTTGTAATGAGATACTGCGTGATTTCGGCCTT
TCGGATTCTGCTACTCTCCTAGTGGGGCTTTTTAAGCTGATTGCGACCAT
GGGGACCGTGTTTACTGTCGATAGGTACGGACGACGCACCCTGTTGCTGA
CAGGCATTGCTGTTATGTTGGTGGCCCTCGCATTGCTCACCACGGCCTTT
GCCTTCGATAAAGAGGACGAAGTAGAGGCGACTGGACAAGCGTTAGATAT
CCTCTTAATCGGCGCGCTCTTCCTTTATATCGCCGGCTACCAAATCGGCT
TCGGACCCATTTCTTGGATTCTCGTATCAGAAATCTACCCAACGGAAGTA
CGGGGAGAGACCGTGGCCTTGGCTGTGATGGCAAATTTTGCGTTTAATCT
CGTAGTGACATTTGCGTTTGATTCCCTCAGGGAGTCTTTGGGGACGAGTG
CGACTTTTGGGTTGTTTCTGGGGATAGCAGCGGGGGGATGGGCTTTTGTT
TATGTATTGTTGCCGGAAACAAATGGATTAAGTCTAGAGATGATTGAGGC
AAAGTTCGCTGCGTCTGCTTTGTCCCCTTTCTCCCGGTGGTCTCGTGGTG
GCCGTGTGGATGAGGTAGGGGGGAGGGGAGATGAGAGAGAGGGTCTGTTG
GCTTGGTTTCACCGGAGGGTGTGCGCCACGTCGGGGCGGGAACAGCAGCA
ACAGCAGCAGCAGCCAGCAGCGGTGGTGGCAGCAGCCGCAGGAGCTGGAG
GAGGGGCTACGCAGATGTTTATTGAGAGCTTGCTGCCGGTGGAGAAGCTA
CAACAACAACAACAACAGCAGTAG back to top
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