NO08G03170.1, NO08G03170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03170.1
Unique NameNO08G03170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length219
Alignment locationchr8:872845..873254 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:872845..873254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03170.1 vs.
Match: EWM26693.1 (Hyaluronan/mRNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0 
Query:    1 MDNQAKEVHDPSDKKAHARPEASRGRQFERRSGTGREETQKKGGAGKANWGNELE 56
            MD Q KE+HDP DKKAH RP+ +RGRQFERRSGTGREETQKKGGAGKANWGNELE
Sbjct:    1 MDQQGKEIHDPHDKKAHTRPDVARGRQFERRSGTGREETQKKGGAGKANWGNELE 55
The following BLAST results are available for this feature:
BLAST of NO08G03170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26693.11.500e-1785.45Hyaluronan/mRNA-binding protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03170NO08G03170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03170.1NO08G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03170.1.cds1NO08G03170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03170.1.cds2NO08G03170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03170.1 ID=NO08G03170.1|Name=NO08G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=219bp
ATGGACAACCAAGCGAAGGAAGTCCACGATCCCTCCGATAAGAAGGCGCA
CGCACGCCCGGAGGCGTCGCGCGGTCGTCAGTTCGAGCGACGCTCAGGCA
CCGGCCGGGAAGAGACTCAAAAGAAGGGCGGTGCTGGCAAGGCCAACTGG
GGCAATGAGCTCGAGGACGTGGATGATATTGTCCGAGAGGTGCACGAGGA
GCTAGCCGGGCAGAAATAG
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protein sequence of NO08G03170.1

>NO08G03170.1-protein ID=NO08G03170.1-protein|Name=NO08G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MDNQAKEVHDPSDKKAHARPEASRGRQFERRSGTGREETQKKGGAGKANW
GNELEDVDDIVREVHEELAGQK*
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mRNA from alignment at chr8:872845..873254+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03170.1 ID=NO08G03170.1|Name=NO08G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=410bp|location=Sequence derived from alignment at chr8:872845..873254+ (Nannochloropsis oceanica)
ATGGACAACCAAGCGAAGGAAGTCCACGATCCCTCCGATAAGAAGGCGCA
CGCACGCCCGGAGGCGTCGCGCGGTCGTCAGTTCGAGCGACGCTCAGGCA
CCGGCCGGGAAGAGACTCAAAAGAAGGGCGGTGCTGGCAAGGCCAACTGG
GGCAATGAGCTCGAGGTATGTCAGGTACAGGGAAAGGATTGATTGTATTA
GCGATCATGCGTAAATATTGCTCTGTTCGTGAAGATCCAGTGGGTCTTCT
TCTCGTTGAGAGCTCCATGTGCCTCAGTACCCCTCTCTTCTTCAACCAAC
CAATCTCTCATTCTTCTCCCACTTCATTCACCCACACTGTCGCGCGTACA
TGGAAGGACGTGGATGATATTGTCCGAGAGGTGCACGAGGAGCTAGCCGG
GCAGAAATAG
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Coding sequence (CDS) from alignment at chr8:872845..873254+

>NO08G03170.1 ID=NO08G03170.1|Name=NO08G03170.1|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at chr8:872845..873254+ (Nannochloropsis oceanica)
ATGGACAACCAAGCGAAGGAAGTCCACGATCCCTCCGATAAGAAGGCGCA
CGCACGCCCGGAGGCGTCGCGCGGTCGTCAGTTCGAGCGACGCTCAGGCA
CCGGCCGGGAAGAGACTCAAAAGAAGGGCGGTGCTGGCAAGGCCAACTGG
GGCAATGAGCTCGAGGACGTGGATGATATTGTCCGAGAGGTGCACGAGGA
GCTAGCCGGGCAGAAATAG
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Synonyms
Publications