NO08G03040.1, NO08G03040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03040.1
Unique NameNO08G03040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1567
Alignment locationchr8:845208..847526 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:845208..847526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03040.1 vs.
Match: EWM26680.1 (rab1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 380.6 bits (976), Expect = 4.400e-102
Identity = 199/213 (93.43%), Postives = 203/213 (95.31%), Query Frame = 0 
Query:   74 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDREDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAAGAGGAVAGGKGGETVSVSNKNTEEKKVGKNCC 287
            MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDR DKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAA G GGA A GK G+TVS+S+KN +E  V KNCC
Sbjct:    1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGA-ASGKSGDTVSLSSKNDKE-GVMKNCC 211
The following BLAST results are available for this feature:
BLAST of NO08G03040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26680.14.400e-10293.43rab1 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03040NO08G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03040.1NO08G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03040.1.cds1NO08G03040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03040.1.cds2NO08G03040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03040.1.cds3NO08G03040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03040.1.cds4NO08G03040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03040.1.cds5NO08G03040.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03040.1 ID=NO08G03040.1|Name=NO08G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp
CTTGTTCCTTCCTCCTTGTCAGTTTCTTGGGATGCCTTCTCGCCTCACTT
CCATTGTTTGTTGTCACGACTGCTCCTAGCTACCAACAGATGCGCAACGC
CTTCAACAGTCTATGTTGTCCAAGGTAGTGAAATCACAACTTGCGACCAA
GGAACTTGAGTAAGCGCTTGCACTCCCCCACAGCTTTGTCAAGCACAACG
GCGGTCTGGAAAGGGTTGGAAACCGTGGATTTTACAAGGCCATGCACACG
CGCATGCTCCCGCACTCCTCATGCGTTCATCTGCCACCACCATTTACTGG
TCTAATCTACTCTGTTCCACTCACACGTACCGCATCCACAGCTAGCTGCA
CGTGCGCCCCCAAGCCACAAGCAAAGCAAAGAAGAAGGACAAAGAGATCA
GGACCGCTGTCCTTGGACCGCCCGCCGCCCACATCTAGACACCGCCACTA
CCAAGCTGTCATGTCAAAGCGAGATTATGACTTCCTCTTCAAGCTCGTCT
TGATTGGGGACACGGGCGTGGGCAAGTCCTGCCTTCTCCTGCGGTTTGCG
GACGACGCCTTTACCGATTCGTACATCTCCACCATCGGAGTCGACTTTCG
ATTCCGCACTGTGAAGATCGACAAGAAGACTTTCAAGCTCCAGATCTGGG
ACACTGCTGGACAGGAGCGATTCCGCACAATCACTTCTGCGTATTACCGA
GGAGCAGACGGTATCATCATGGTCTATGACGTCACCAATGAGGAATCCTT
TGAGCACATCCAGGACTGGCTGAATGAGGTGAATCGATACGCCTCTGAGG
GGACCTGCAAGCTCTTGGTCGGCAACAAGAGCGACCGAGAGGACAAGGTG
GTCTCTACCGAAAGGGCGAAGAAATTCGCCGATGAATTAGGCATTCCTTT
TCTCGAAACCTCGGCCAAGAACGCTTCCAACGTCGAAGAAGCGTTTCTAA
CGATGGCGCAAGAGTTGATCCGCCTCCGTGAGGCCAAGGGGGCCGCGGCG
GCTGGCGCGGGGGGGGCGGTTGCAGGAGGGAAGGGGGGGGAAACAGTGTC
GGTGTCGAACAAGAATACAGAAGAGAAGAAGGTAGGGAAAAATTGTTGCT
AGGCTATTCGGGTTGAAAGAAGGAGGTGGTGTTTCTAGTCATGAGGAATA
GAGGGAGGGGAAAATGTAGTCCTTGAAATGGACGTAACAAATTAATTATA
AAAAAGAGAATAAAGCAAGCAAGTGCGCGATAAAAGGTCGAATGAACAAA
GAGTGAAAGTCGCGCAAAGTAGAGATTTGTAGAGACATTTTTTCATGTAC
GTGTGTGTGAGTGGAGATAGCCAGCTGTGAGCAAACAAGACCTTTTAATC
AAAAGGGAAGTTCAGGGGATGTGGGTTCAGTACACTCACCATCGGGCAGA
AGGAGGGGGAAAGATAGCCGCTACCTGCATGCAAGATAAGACAAAAGGAG
ATACAAAAAAGACACAATTTGATGGCAATAGTCTGACATACTGACACTGA
ATCCGTTTGAGCGTCGTTTTTGTACCGTCGGTGGTACACAACCCATGAAA
AATTATGCCCACAGATT
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protein sequence of NO08G03040.1

>NO08G03040.1-protein ID=NO08G03040.1-protein|Name=NO08G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MHTRMLPHSSCVHLPPPFTGLIYSVPLTRTASTASCTCAPKPQAKQRRRT
KRSGPLSLDRPPPTSRHRHYQAVMSKRDYDFLFKLVLIGDTGVGKSCLLL
RFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSA
YYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRE
DKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKG
AAAAGAGGAVAGGKGGETVSVSNKNTEEKKVGKNCC*
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mRNA from alignment at chr8:845208..847526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03040.1 ID=NO08G03040.1|Name=NO08G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp|location=Sequence derived from alignment at chr8:845208..847526+ (Nannochloropsis oceanica)
CTTGTTCCTTCCTCCTTGTCAGTTTCTTGGGATGCCTTCTCGCCTCACTT
CCATTGTTTGTTGTCACGACTGCTCCTAGCTACCAACAGATGCGCAACGC
CTTCAACAGTCTATGTTGTCCAAGGTAGTGAAATCACAACTTGCGACCAA
GGAACTTGAGTAAGCGCTTGCACTCCCCCACAGCTTTGTCAAGCACAACG
GCGGTCTGGAAAGGGTTGGAAACCGTGGATTTTACAAGGCCATGCACACG
CGCATGCTCCCGCACTCCTCATGCGTTCATCTGCCACCACCATTTACTGG
TCTAATCTACTCTGTTCCACTCACACGTACCGCATCCACAGCTAGCTGCA
CGTGCGCCCCCAAGCCACAAGCAAAGCAAAGAAGAAGGACAAAGAGATCA
GGACCGCTGTCCTTGGACCGCCCGCCGCCCACATCTAGACACCGCCACTA
CCAAGCTGTCATGTCAAAGCGAGATTATGACTTCCTCTTCAAGCTCGTCT
TGATTGGGGACACGGGCGTGGGCAAGTCCTGCCTTCTCCTGCGGTTTGCG
GACGACGCCTTTACCGATTCGTACATCTCCACCATCGGAGTCGACTTTGT
GAGTACTTATTGTAGCAGGAAGCAACATGTGGCTTCATAGACTAGATTTA
TGAATATTTCTGTGCGTCGCTCGCATTGTCAGTAGTGTCGCAGATACGGA
TAGGAAGTGGTGGGTCTGGGAAGGGGGCTGGGAACTGGTCAGGCCCTTCA
TTCTCTTTTGCACGTGTCGCCACTGCTCTCCTTTTCATTTCTGACGCTAC
CCTCATATTTTTCTATACTACATACATGTGACCACTCCAGCGATTCCGCA
CTGTGAAGATCGACAAGAAGACTTTCAAGCTCCAGATCGTAAGTAGGGGA
GAGAGGACGAAAGTACGGAGCTGAGGGATGAAAGCGAGATGAACTTGCAT
CACGACCGGCGGGCGAAGTTTGTTGTATATCATTAGGATTCCTCCCCTCT
CACCTGAACCATGCTTTCCGCGATGATGCGGCCACTATTTGGCGCTCTCT
CTTTTCTTTTACCTCATTTTGCTGGCATCCCCTCTCTCTGCCTCCCTCCC
TTCCTTACAGTGGGACACTGCTGGACAGGAGCGATTCCGCACAATCACTT
CTGCGTATTACCGAGGAGCAGACGGTATCATCATGGTCTATGACGTCACC
AATGAGGTGAGGGGCTACAGACGGTGGGAGAGAGATAGGGAAGAAGTCAA
GTAGAAGATGAGAGAAATTGGCGTGAATTTTATTGCATGCTTTATTTATT
CCGAGTTTTGATATCCCTCCTACTCTCCCCTTTCCCTTTCTCCTTCAGGA
ATCCTTTGAGCACATCCAGGACTGGCTGAATGAGGTGAATCGATACGCCT
CTGAGGGGACCTGCAAGCTCTTGGTCGGCAACAAGAGCGACCGAGAGGAC
AAGGTGGTCTCTACCGAAAGGGCGAAGGTGCGTCTTTCTATGTTTCCTCC
TCCGAATGCTGCTTCTTCTTCGTATGCGTGTTGATGATTTCCCCCCTGAA
TAATTGAAGTGACCATTTGCTTCTCCTCTCACTGCCCTCCAACCATTTAT
CCTTCCCTACCTTCACTTTCCAGAAATTCGCCGATGAATTAGGCATTCCT
TTTCTCGAAACCTCGGCCAAGAACGCTTCCAACGTCGAAGAAGCGTTTCT
AACGATGGCGCAAGAGTTGATCCGCCTCCGTGAGGCCAAGGGGGCCGCGG
CGGCTGGCGCGGGGGGGGCGGTTGCAGGAGGGAAGGGGGGGGAAACAGTG
TCGGTGTCGAACAAGAATACAGAAGAGAAGAAGGTAGGGAAAAATTGTTG
CTAGGCTATTCGGGTTGAAAGAAGGAGGTGGTGTTTCTAGTCATGAGGAA
TAGAGGGAGGGGAAAATGTAGTCCTTGAAATGGACGTAACAAATTAATTA
TAAAAAAGAGAATAAAGCAAGCAAGTGCGCGATAAAAGGTCGAATGAACA
AAGAGTGAAAGTCGCGCAAAGTAGAGATTTGTAGAGACATTTTTTCATGT
ACGTGTGTGTGAGTGGAGATAGCCAGCTGTGAGCAAACAAGACCTTTTAA
TCAAAAGGGAAGTTCAGGGGATGTGGGTTCAGTACACTCACCATCGGGCA
GAAGGAGGGGGAAAGATAGCCGCTACCTGCATGCAAGATAAGACAAAAGG
AGATACAAAAAAGACACAATTTGATGGCAATAGTCTGACATACTGACACT
GAATCCGTTTGAGCGTCGTTTTTGTACCGTCGGTGGTACACAACCCATGA
AAAATTATGCCCACAGATT
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Coding sequence (CDS) from alignment at chr8:845208..847526+

>NO08G03040.1 ID=NO08G03040.1|Name=NO08G03040.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr8:845208..847526+ (Nannochloropsis oceanica)
ATGCACACGCGCATGCTCCCGCACTCCTCATGCGTTCATCTGCCACCACC
ATTTACTGGTCTAATCTACTCTGTTCCACTCACACGTACCGCATCCACAG
CTAGCTGCACGTGCGCCCCCAAGCCACAAGCAAAGCAAAGAAGAAGGACA
AAGAGATCAGGACCGCTGTCCTTGGACCGCCCGCCGCCCACATCTAGACA
CCGCCACTACCAAGCTGTCATGTCAAAGCGAGATTATGACTTCCTCTTCA
AGCTCGTCTTGATTGGGGACACGGGCGTGGGCAAGTCCTGCCTTCTCCTG
CGGTTTGCGGACGACGCCTTTACCGATTCGTACATCTCCACCATCGGAGT
CGACTTTCGATTCCGCACTGTGAAGATCGACAAGAAGACTTTCAAGCTCC
AGATCTGGGACACTGCTGGACAGGAGCGATTCCGCACAATCACTTCTGCG
TATTACCGAGGAGCAGACGGTATCATCATGGTCTATGACGTCACCAATGA
GGAATCCTTTGAGCACATCCAGGACTGGCTGAATGAGGTGAATCGATACG
CCTCTGAGGGGACCTGCAAGCTCTTGGTCGGCAACAAGAGCGACCGAGAG
GACAAGGTGGTCTCTACCGAAAGGGCGAAGAAATTCGCCGATGAATTAGG
CATTCCTTTTCTCGAAACCTCGGCCAAGAACGCTTCCAACGTCGAAGAAG
CGTTTCTAACGATGGCGCAAGAGTTGATCCGCCTCCGTGAGGCCAAGGGG
GCCGCGGCGGCTGGCGCGGGGGGGGCGGTTGCAGGAGGGAAGGGGGGGGA
AACAGTGTCGGTGTCGAACAAGAATACAGAAGAGAAGAAGGTAGGGAAAA
ATTGTTGCTAG
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Synonyms
Publications