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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:833179..835226 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02990.1 vs.
Match: EWM26686.1 (caax prenyl protease 1 [Nannochloropsis gaditana]) HSP 1 Score: 748.8 bits (1932), Expect = 1.000e-212 Identity = 380/515 (73.79%), Postives = 426/515 (82.72%), Query Frame = 0
Query: 5 DAWAIIRNFGSELSFPTYKQQGTGMADVPYLELIVLFSFIVFVFEFYLDLRQYGALQRKDVPEALTTRISELDQAAASKNGG---------DSKDKDGTTTLLARLTSKFEAARKYSIDKAHLGFVETLFSQMEATAMLLLGSMPWVWDMSVNLAGKWFGKAEDEYIISLVFLGINMVIENIIHLPFSLWSVFVVEQRHGFNKQSLKDFLLDKVKAVALSALLGSPMTVAVLYVIKAGGRNFFLYLYLLVLAFQLILLTVYPTVIAPIFNKYEPLAEESELKPQIDALASRVKFPLTKVFVVDGSRRSAHSNAYFYGFFKNKRIVLFDTLLTQVQSSELISILAHELGHWAHSHTLQMFFVSQVHLFLAFFLFSSSLDNADLFHSFGFATRPTIIALFLFFQAIWSPVDKALSFGFTLWTRKNEFQ--------------------------ADEYAVDLGYAEDLQRGLVKLQVENLSNPSPDRWYSFYHYSHPPLTERLAAICARQEGREKKR 485
D WA +R+FG+ LS P Y+Q+G G ADVPYLEL++LFSFIVFV+EFYLD+RQY ALQRKD+P ALT RI+ELD A + D+ T+LL RLTSKFEAAR YSIDKAHLGFVET FSQ E T +LLLGSMPW WD SV LAG+W GK E+EY++SLV LG+NMV+E ++HLPFSLW+VFVVE+RHGFNKQSL +F LDK+K +ALSALLG PMT+AVLYVIKAGGRNFFLYLYLLVLAFQL+LLT+YPTVIAP+FNKYEPL E+SELK QIDALASRVKFPLTKVFVVDGSRRSAHSNAYFYGFFKNKRIVLFDTL+ QV+ SEL+S+LAHELGHWAHSHTLQMF VSQVHLFLAFFLF+SS+DNA LF SFGF++RPTIIAL LFFQAIWSPVDKALSF FTLWTR+NEFQ ADEYAV LGY+EDLQRGLVKLQ+ENLSNPSPD WYSFYHYSHPPLTERLAAI ARQ+ E+KR
Sbjct: 15 DRWAHVRSFGTGLSLPVYRQKGAGEADVPYLELLILFSFIVFVWEFYLDVRQYRALQRKDIPSALTERIAELDSRATASGSAPPEQASQYKDAPSPPAATSLLDRLTSKFEAARNYSIDKAHLGFVETAFSQTENTTLLLLGSMPWFWDTSVELAGRWLGKRENEYVVSLVLLGLNMVLEQVVHLPFSLWAVFVVEERHGFNKQSLGNFFLDKLKGLALSALLGGPMTLAVLYVIKAGGRNFFLYLYLLVLAFQLLLLTIYPTVIAPLFNKYEPLPEDSELKIQIDALASRVKFPLTKVFVVDGSRRSAHSNAYFYGFFKNKRIVLFDTLIAQVRPSELLSVLAHELGHWAHSHTLQMFLVSQVHLFLAFFLFASSVDNAALFASFGFSSRPTIIALLLFFQAIWSPVDKALSFVFTLWTRRNEFQVASQRPVPPCSARPLTLSPPPGPFLQADEYAVGLGYSEDLQRGLVKLQIENLSNPSPDPWYSFYHYSHPPLTERLAAIWARQQAVERKR 529
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02990.1 ID=NO08G02990.1|Name=NO08G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp ATGCCCCCAAATGATGCCTGGGCGATCATCCGCAATTTCGGATCGGAACT TTCTTTCCCCACCTACAAGCAACAAGGGACTGGCATGGCGGACGTGCCAT ACCTGGAGTTGATAGTCCTCTTCTCCTTCATCGTCTTTGTCTTTGAGTTC TACCTGGACCTGCGGCAGTACGGGGCCTTGCAACGCAAGGACGTGCCTGA AGCCTTGACGACACGCATCAGCGAGCTCGATCAGGCAGCCGCGTCGAAGA ATGGAGGAGACTCGAAGGACAAGGATGGCACCACGACCCTGCTCGCTCGT TTGACCTCGAAATTTGAAGCTGCAAGAAAATATTCTATTGATAAGGCGCA TCTTGGGTTTGTTGAAACTCTCTTCTCCCAAATGGAAGCGACGGCGATGC TCTTGCTTGGAAGTATGCCTTGGGTATGGGACATGTCGGTCAACTTAGCC GGGAAATGGTTTGGGAAAGCAGAAGACGAGTATATCATCTCTCTCGTCTT CCTAGGTATCAACATGGTGATTGAGAATATCATCCACCTACCCTTCTCCC TTTGGTCCGTCTTTGTGGTCGAGCAACGGCATGGTTTCAACAAGCAGTCC CTCAAGGACTTCCTCCTTGATAAAGTCAAGGCCGTCGCCCTCTCGGCCCT CCTCGGCAGCCCTATGACCGTCGCTGTCCTCTATGTCATCAAAGCCGGCG GTCGAAACTTTTTCCTCTACCTCTACCTTCTCGTGCTCGCCTTCCAGCTC ATTCTCCTCACAGTCTATCCTACCGTCATCGCTCCAATCTTCAATAAATA CGAACCTCTGGCGGAAGAATCTGAATTAAAACCTCAAATTGACGCCTTGG CATCGCGGGTGAAGTTTCCGTTGACCAAGGTGTTTGTGGTAGATGGATCG CGGAGAAGTGCGCATTCAAACGCGTATTTTTATGGGTTTTTTAAGAATAA GCGGATTGTGCTGTTTGATACGCTGCTGACGCAGGTGCAATCCTCGGAGC TGATTTCGATCCTCGCCCACGAGCTCGGGCACTGGGCGCACAGCCACACC CTCCAAATGTTTTTCGTCAGTCAAGTGCACCTCTTCCTGGCCTTCTTCCT CTTCTCCTCTTCTCTGGACAACGCCGACCTATTCCATTCGTTTGGCTTCG CGACTCGCCCCACGATCATTGCTCTATTCCTCTTTTTTCAAGCGATTTGG TCCCCGGTTGACAAGGCGTTGAGCTTTGGCTTCACGTTGTGGACCCGCAA AAACGAGTTCCAGGCAGACGAATACGCAGTCGATCTGGGTTACGCCGAGG ACTTACAGCGAGGGCTGGTCAAGCTGCAGGTTGAGAATCTTTCCAACCCC TCCCCTGATCGATGGTATAGCTTCTACCATTACTCCCACCCGCCTCTGAC GGAGCGATTGGCAGCAATATGTGCGCGGCAAGAGGGGAGGGAGAAGAAGA GGGGGTGA back to topprotein sequence of NO08G02990.1 >NO08G02990.1-protein ID=NO08G02990.1-protein|Name=NO08G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp MPPNDAWAIIRNFGSELSFPTYKQQGTGMADVPYLELIVLFSFIVFVFEF YLDLRQYGALQRKDVPEALTTRISELDQAAASKNGGDSKDKDGTTTLLAR LTSKFEAARKYSIDKAHLGFVETLFSQMEATAMLLLGSMPWVWDMSVNLA GKWFGKAEDEYIISLVFLGINMVIENIIHLPFSLWSVFVVEQRHGFNKQS LKDFLLDKVKAVALSALLGSPMTVAVLYVIKAGGRNFFLYLYLLVLAFQL ILLTVYPTVIAPIFNKYEPLAEESELKPQIDALASRVKFPLTKVFVVDGS RRSAHSNAYFYGFFKNKRIVLFDTLLTQVQSSELISILAHELGHWAHSHT LQMFFVSQVHLFLAFFLFSSSLDNADLFHSFGFATRPTIIALFLFFQAIW SPVDKALSFGFTLWTRKNEFQADEYAVDLGYAEDLQRGLVKLQVENLSNP SPDRWYSFYHYSHPPLTERLAAICARQEGREKKRG* back to topmRNA from alignment at chr8:833179..835226+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02990.1 ID=NO08G02990.1|Name=NO08G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2048bp|location=Sequence derived from alignment at chr8:833179..835226+ (Nannochloropsis oceanica) ATGCCCCCAAATGATGCCTGGGCGATCATCCGCAATTTCGGATCGGAACT
TTCTTTCCCCACCTACAAGCAACAAGGGACTGGCATGGCGGACGTGCCAT
ACCTGGAGTTGATAGTCCTCTTCTCCTTCATCGTCTTTGTCTTTGAGTTC
TACCTGGACCTGCGGCAGTACGGGGCCTTGCAACGCAAGGACGTGCCTGA
AGCCTTGACGACACGCATCAGCGAGCTCGATCAGGCAGCCGCGTCGAAGA
ATGGAGGAGACTCGAAGGACAAGGATGGCACCACGACCCTGCTCGCTCGT
TTGACCTCGAAATTTGAAGCTGCAAGAAAATATTCTATTGATAAGGCGCA
TCTTGGGTTTGTTGAAACTCTCTTCTCCCAAATGGAAGCGACGGCGATGC
TCTTGCTTGGAAGTATGCCTTGGGTATGGGACATGTCGGTCAACTTAGCC
GGGAAATGGTTTGGGAAAGCAGAAGACGAGTATATCATCTCTCTCGTCTT
CCTAGGTATCAACATGGTGATTGAGAATATCATCCACCTACCCTTCTCCC
TTTGGTCCGTCTTTGTGGTCGAGCAACGGCATGGTTTCAACAAGCAGTCC
CTCAAGGACTTCCTCCTTGATAAAGTCAAGGCCGTCGCCCTCTCGGCCCT
CCTCGGCAGCCCTATGACCGTCGCTGTCCTCTATGTCATCAAAGCCGGCG
GTCGAAACTTTTTCCTCTACCTCTACCTTCTCGTGCTCGCCTTCCAGCTC
ATTCTCCTCACAGTCTATCCTACCGTCATCGCTCCAATCTTCAATAAATA
CGAACCTCTGGCGGAAGAATCTGAATTAAAACCTCAAATTGACGCCTTGG
CATCGCGGGTGAAGTTTCCGTTGACCAAGGTGTTTGTGGTAGATGGATCG
CGGAGAAGTGCGCATTCAAACGCGTATTTTTATGGGTTTTTTAAGAATAA
GCGGATTGTGCTGTTTGATACGCTGCTGACGCAGGTAGGTATGGAGGAAG
GGAAGCAGAAATGGTTGGAGTGAGCGTGAGAAGGTTGAACGAAGAAGTTT
ACGGTTTGTGAATATGTCCGACTCACTTCGCCTATCGTCCCCTCTTCCAC
AGGTGCAATCCTCGGAGCTGATTTCGATCCTCGCCCACGAGCTCGGGCAC
TGGGCGCACAGCCACACCCTCCAAATGTTTTTCGTCAGTCAAGTGCACCT
CTTCCTGGCCTTCTTCCTCTTCTCCTCTTCTCTGGACAACGCCGACCTAT
TCCATTCGTTTGGCTTCGCGACTCGCCCCACGATCATTGCTCTATTCCTC
TTTTTTCAAGCGATTTGGTCCCCGGTTGACAAGGCGTTGAGCTTTGGCTT
CACGTTGTGGACCCGCAAAAACGAGTTCCAGGTAGGGAGCGGAGGGTAAG
AAGGGCGCGACGGAGGCAGGGAGGGAGCAAGACATTGGAAAAAAGGCTTT
AAGTGTGGGACATGGTCCTTACATTTCGTCTTTACCAATCTCCTTTGCCT
CCTCCCCCCATTCCTCCTGTTTTGGAGGGGTTGATACGCCATCGTTCCAG
GCTCCAGCAAAGGCTTGCAACGCGGCCACGAGAAACAGCACATTTACACT
TTATCCGACTTTCCCCTTGTCGGAAAGTTGCGATTCAATCATTCTTCTCA
TCCTTACCCCCCCTCTTTTCAGGCAGACGAATACGCAGTCGATCTGGGTT
ACGCCGAGGACTTACAGCGAGGGCTGGTCAAGCTGCAGGTAGGTCTCCCT
CGTCCCCCCCTCCCCCTCTCTCTAGCGCGTACCTCGAGTCGAGAACCACC
ACGCCCCGTCACGTCTCTTGTTGTTCGATTGCCCCTCCTGGCCCATGTCT
ATCTCATCGATTCACGCTCACATTCCTGCACGCATTACTGTATCCTCATA
CTCACGTTCTCGCATTCAGGTTGAGAATCTTTCCAACCCCTCCCCTGATC
GATGGTATAGCTTCTACCATTACTCCCACCCGCCTCTGACGGAGCGATTG
GCAGCAATATGTGCGCGGCAAGAGGGGAGGGAGAAGAAGAGGGGGTGA back to topCoding sequence (CDS) from alignment at chr8:833179..835226+ >NO08G02990.1 ID=NO08G02990.1|Name=NO08G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr8:833179..835226+ (Nannochloropsis oceanica) ATGCCCCCAAATGATGCCTGGGCGATCATCCGCAATTTCGGATCGGAACT TTCTTTCCCCACCTACAAGCAACAAGGGACTGGCATGGCGGACGTGCCAT ACCTGGAGTTGATAGTCCTCTTCTCCTTCATCGTCTTTGTCTTTGAGTTC TACCTGGACCTGCGGCAGTACGGGGCCTTGCAACGCAAGGACGTGCCTGA AGCCTTGACGACACGCATCAGCGAGCTCGATCAGGCAGCCGCGTCGAAGA ATGGAGGAGACTCGAAGGACAAGGATGGCACCACGACCCTGCTCGCTCGT TTGACCTCGAAATTTGAAGCTGCAAGAAAATATTCTATTGATAAGGCGCA TCTTGGGTTTGTTGAAACTCTCTTCTCCCAAATGGAAGCGACGGCGATGC TCTTGCTTGGAAGTATGCCTTGGGTATGGGACATGTCGGTCAACTTAGCC GGGAAATGGTTTGGGAAAGCAGAAGACGAGTATATCATCTCTCTCGTCTT CCTAGGTATCAACATGGTGATTGAGAATATCATCCACCTACCCTTCTCCC TTTGGTCCGTCTTTGTGGTCGAGCAACGGCATGGTTTCAACAAGCAGTCC CTCAAGGACTTCCTCCTTGATAAAGTCAAGGCCGTCGCCCTCTCGGCCCT CCTCGGCAGCCCTATGACCGTCGCTGTCCTCTATGTCATCAAAGCCGGCG GTCGAAACTTTTTCCTCTACCTCTACCTTCTCGTGCTCGCCTTCCAGCTC ATTCTCCTCACAGTCTATCCTACCGTCATCGCTCCAATCTTCAATAAATA CGAACCTCTGGCGGAAGAATCTGAATTAAAACCTCAAATTGACGCCTTGG CATCGCGGGTGAAGTTTCCGTTGACCAAGGTGTTTGTGGTAGATGGATCG CGGAGAAGTGCGCATTCAAACGCGTATTTTTATGGGTTTTTTAAGAATAA GCGGATTGTGCTGTTTGATACGCTGCTGACGCAGGTGCAATCCTCGGAGC TGATTTCGATCCTCGCCCACGAGCTCGGGCACTGGGCGCACAGCCACACC CTCCAAATGTTTTTCGTCAGTCAAGTGCACCTCTTCCTGGCCTTCTTCCT CTTCTCCTCTTCTCTGGACAACGCCGACCTATTCCATTCGTTTGGCTTCG CGACTCGCCCCACGATCATTGCTCTATTCCTCTTTTTTCAAGCGATTTGG TCCCCGGTTGACAAGGCGTTGAGCTTTGGCTTCACGTTGTGGACCCGCAA AAACGAGTTCCAGGCAGACGAATACGCAGTCGATCTGGGTTACGCCGAGG ACTTACAGCGAGGGCTGGTCAAGCTGCAGGTTGAGAATCTTTCCAACCCC TCCCCTGATCGATGGTATAGCTTCTACCATTACTCCCACCCGCCTCTGAC GGAGCGATTGGCAGCAATATGTGCGCGGCAAGAGGGGAGGGAGAAGAAGA GGGGGTGA back to top
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