NO08G02990.1, NO08G02990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02990.1
Unique NameNO08G02990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr8:833179..835226 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:833179..835226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02990.1 vs.
Match: EWM26686.1 (caax prenyl protease 1 [Nannochloropsis gaditana])

HSP 1 Score: 748.8 bits (1932), Expect = 1.000e-212
Identity = 380/515 (73.79%), Postives = 426/515 (82.72%), Query Frame = 0
Query:    5 DAWAIIRNFGSELSFPTYKQQGTGMADVPYLELIVLFSFIVFVFEFYLDLRQYGALQRKDVPEALTTRISELDQAAASKNGG---------DSKDKDGTTTLLARLTSKFEAARKYSIDKAHLGFVETLFSQMEATAMLLLGSMPWVWDMSVNLAGKWFGKAEDEYIISLVFLGINMVIENIIHLPFSLWSVFVVEQRHGFNKQSLKDFLLDKVKAVALSALLGSPMTVAVLYVIKAGGRNFFLYLYLLVLAFQLILLTVYPTVIAPIFNKYEPLAEESELKPQIDALASRVKFPLTKVFVVDGSRRSAHSNAYFYGFFKNKRIVLFDTLLTQVQSSELISILAHELGHWAHSHTLQMFFVSQVHLFLAFFLFSSSLDNADLFHSFGFATRPTIIALFLFFQAIWSPVDKALSFGFTLWTRKNEFQ--------------------------ADEYAVDLGYAEDLQRGLVKLQVENLSNPSPDRWYSFYHYSHPPLTERLAAICARQEGREKKR 485
            D WA +R+FG+ LS P Y+Q+G G ADVPYLEL++LFSFIVFV+EFYLD+RQY ALQRKD+P ALT RI+ELD  A +             D+      T+LL RLTSKFEAAR YSIDKAHLGFVET FSQ E T +LLLGSMPW WD SV LAG+W GK E+EY++SLV LG+NMV+E ++HLPFSLW+VFVVE+RHGFNKQSL +F LDK+K +ALSALLG PMT+AVLYVIKAGGRNFFLYLYLLVLAFQL+LLT+YPTVIAP+FNKYEPL E+SELK QIDALASRVKFPLTKVFVVDGSRRSAHSNAYFYGFFKNKRIVLFDTL+ QV+ SEL+S+LAHELGHWAHSHTLQMF VSQVHLFLAFFLF+SS+DNA LF SFGF++RPTIIAL LFFQAIWSPVDKALSF FTLWTR+NEFQ                          ADEYAV LGY+EDLQRGLVKLQ+ENLSNPSPD WYSFYHYSHPPLTERLAAI ARQ+  E+KR
Sbjct:   15 DRWAHVRSFGTGLSLPVYRQKGAGEADVPYLELLILFSFIVFVWEFYLDVRQYRALQRKDIPSALTERIAELDSRATASGSAPPEQASQYKDAPSPPAATSLLDRLTSKFEAARNYSIDKAHLGFVETAFSQTENTTLLLLGSMPWFWDTSVELAGRWLGKRENEYVVSLVLLGLNMVLEQVVHLPFSLWAVFVVEERHGFNKQSLGNFFLDKLKGLALSALLGGPMTLAVLYVIKAGGRNFFLYLYLLVLAFQLLLLTIYPTVIAPLFNKYEPLPEDSELKIQIDALASRVKFPLTKVFVVDGSRRSAHSNAYFYGFFKNKRIVLFDTLIAQVRPSELLSVLAHELGHWAHSHTLQMFLVSQVHLFLAFFLFASSVDNAALFASFGFSSRPTIIALLLFFQAIWSPVDKALSFVFTLWTRRNEFQVASQRPVPPCSARPLTLSPPPGPFLQADEYAVGLGYSEDLQRGLVKLQIENLSNPSPDPWYSFYHYSHPPLTERLAAIWARQQAVERKR 529          
The following BLAST results are available for this feature:
BLAST of NO08G02990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26686.11.000e-21273.79caax prenyl protease 1 [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02990NO08G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02990.1NO08G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02990.1.cds1NO08G02990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02990.1.cds2NO08G02990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02990.1.cds3NO08G02990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02990.1.cds4NO08G02990.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02990.1 ID=NO08G02990.1|Name=NO08G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGCCCCCAAATGATGCCTGGGCGATCATCCGCAATTTCGGATCGGAACT
TTCTTTCCCCACCTACAAGCAACAAGGGACTGGCATGGCGGACGTGCCAT
ACCTGGAGTTGATAGTCCTCTTCTCCTTCATCGTCTTTGTCTTTGAGTTC
TACCTGGACCTGCGGCAGTACGGGGCCTTGCAACGCAAGGACGTGCCTGA
AGCCTTGACGACACGCATCAGCGAGCTCGATCAGGCAGCCGCGTCGAAGA
ATGGAGGAGACTCGAAGGACAAGGATGGCACCACGACCCTGCTCGCTCGT
TTGACCTCGAAATTTGAAGCTGCAAGAAAATATTCTATTGATAAGGCGCA
TCTTGGGTTTGTTGAAACTCTCTTCTCCCAAATGGAAGCGACGGCGATGC
TCTTGCTTGGAAGTATGCCTTGGGTATGGGACATGTCGGTCAACTTAGCC
GGGAAATGGTTTGGGAAAGCAGAAGACGAGTATATCATCTCTCTCGTCTT
CCTAGGTATCAACATGGTGATTGAGAATATCATCCACCTACCCTTCTCCC
TTTGGTCCGTCTTTGTGGTCGAGCAACGGCATGGTTTCAACAAGCAGTCC
CTCAAGGACTTCCTCCTTGATAAAGTCAAGGCCGTCGCCCTCTCGGCCCT
CCTCGGCAGCCCTATGACCGTCGCTGTCCTCTATGTCATCAAAGCCGGCG
GTCGAAACTTTTTCCTCTACCTCTACCTTCTCGTGCTCGCCTTCCAGCTC
ATTCTCCTCACAGTCTATCCTACCGTCATCGCTCCAATCTTCAATAAATA
CGAACCTCTGGCGGAAGAATCTGAATTAAAACCTCAAATTGACGCCTTGG
CATCGCGGGTGAAGTTTCCGTTGACCAAGGTGTTTGTGGTAGATGGATCG
CGGAGAAGTGCGCATTCAAACGCGTATTTTTATGGGTTTTTTAAGAATAA
GCGGATTGTGCTGTTTGATACGCTGCTGACGCAGGTGCAATCCTCGGAGC
TGATTTCGATCCTCGCCCACGAGCTCGGGCACTGGGCGCACAGCCACACC
CTCCAAATGTTTTTCGTCAGTCAAGTGCACCTCTTCCTGGCCTTCTTCCT
CTTCTCCTCTTCTCTGGACAACGCCGACCTATTCCATTCGTTTGGCTTCG
CGACTCGCCCCACGATCATTGCTCTATTCCTCTTTTTTCAAGCGATTTGG
TCCCCGGTTGACAAGGCGTTGAGCTTTGGCTTCACGTTGTGGACCCGCAA
AAACGAGTTCCAGGCAGACGAATACGCAGTCGATCTGGGTTACGCCGAGG
ACTTACAGCGAGGGCTGGTCAAGCTGCAGGTTGAGAATCTTTCCAACCCC
TCCCCTGATCGATGGTATAGCTTCTACCATTACTCCCACCCGCCTCTGAC
GGAGCGATTGGCAGCAATATGTGCGCGGCAAGAGGGGAGGGAGAAGAAGA
GGGGGTGA
back to top

protein sequence of NO08G02990.1

>NO08G02990.1-protein ID=NO08G02990.1-protein|Name=NO08G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MPPNDAWAIIRNFGSELSFPTYKQQGTGMADVPYLELIVLFSFIVFVFEF
YLDLRQYGALQRKDVPEALTTRISELDQAAASKNGGDSKDKDGTTTLLAR
LTSKFEAARKYSIDKAHLGFVETLFSQMEATAMLLLGSMPWVWDMSVNLA
GKWFGKAEDEYIISLVFLGINMVIENIIHLPFSLWSVFVVEQRHGFNKQS
LKDFLLDKVKAVALSALLGSPMTVAVLYVIKAGGRNFFLYLYLLVLAFQL
ILLTVYPTVIAPIFNKYEPLAEESELKPQIDALASRVKFPLTKVFVVDGS
RRSAHSNAYFYGFFKNKRIVLFDTLLTQVQSSELISILAHELGHWAHSHT
LQMFFVSQVHLFLAFFLFSSSLDNADLFHSFGFATRPTIIALFLFFQAIW
SPVDKALSFGFTLWTRKNEFQADEYAVDLGYAEDLQRGLVKLQVENLSNP
SPDRWYSFYHYSHPPLTERLAAICARQEGREKKRG*
back to top

mRNA from alignment at chr8:833179..835226+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02990.1 ID=NO08G02990.1|Name=NO08G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2048bp|location=Sequence derived from alignment at chr8:833179..835226+ (Nannochloropsis oceanica)
ATGCCCCCAAATGATGCCTGGGCGATCATCCGCAATTTCGGATCGGAACT TTCTTTCCCCACCTACAAGCAACAAGGGACTGGCATGGCGGACGTGCCAT ACCTGGAGTTGATAGTCCTCTTCTCCTTCATCGTCTTTGTCTTTGAGTTC TACCTGGACCTGCGGCAGTACGGGGCCTTGCAACGCAAGGACGTGCCTGA AGCCTTGACGACACGCATCAGCGAGCTCGATCAGGCAGCCGCGTCGAAGA ATGGAGGAGACTCGAAGGACAAGGATGGCACCACGACCCTGCTCGCTCGT TTGACCTCGAAATTTGAAGCTGCAAGAAAATATTCTATTGATAAGGCGCA TCTTGGGTTTGTTGAAACTCTCTTCTCCCAAATGGAAGCGACGGCGATGC TCTTGCTTGGAAGTATGCCTTGGGTATGGGACATGTCGGTCAACTTAGCC GGGAAATGGTTTGGGAAAGCAGAAGACGAGTATATCATCTCTCTCGTCTT CCTAGGTATCAACATGGTGATTGAGAATATCATCCACCTACCCTTCTCCC TTTGGTCCGTCTTTGTGGTCGAGCAACGGCATGGTTTCAACAAGCAGTCC CTCAAGGACTTCCTCCTTGATAAAGTCAAGGCCGTCGCCCTCTCGGCCCT CCTCGGCAGCCCTATGACCGTCGCTGTCCTCTATGTCATCAAAGCCGGCG GTCGAAACTTTTTCCTCTACCTCTACCTTCTCGTGCTCGCCTTCCAGCTC ATTCTCCTCACAGTCTATCCTACCGTCATCGCTCCAATCTTCAATAAATA CGAACCTCTGGCGGAAGAATCTGAATTAAAACCTCAAATTGACGCCTTGG CATCGCGGGTGAAGTTTCCGTTGACCAAGGTGTTTGTGGTAGATGGATCG CGGAGAAGTGCGCATTCAAACGCGTATTTTTATGGGTTTTTTAAGAATAA GCGGATTGTGCTGTTTGATACGCTGCTGACGCAGGTAGGTATGGAGGAAG GGAAGCAGAAATGGTTGGAGTGAGCGTGAGAAGGTTGAACGAAGAAGTTT ACGGTTTGTGAATATGTCCGACTCACTTCGCCTATCGTCCCCTCTTCCAC AGGTGCAATCCTCGGAGCTGATTTCGATCCTCGCCCACGAGCTCGGGCAC TGGGCGCACAGCCACACCCTCCAAATGTTTTTCGTCAGTCAAGTGCACCT CTTCCTGGCCTTCTTCCTCTTCTCCTCTTCTCTGGACAACGCCGACCTAT TCCATTCGTTTGGCTTCGCGACTCGCCCCACGATCATTGCTCTATTCCTC TTTTTTCAAGCGATTTGGTCCCCGGTTGACAAGGCGTTGAGCTTTGGCTT CACGTTGTGGACCCGCAAAAACGAGTTCCAGGTAGGGAGCGGAGGGTAAG AAGGGCGCGACGGAGGCAGGGAGGGAGCAAGACATTGGAAAAAAGGCTTT AAGTGTGGGACATGGTCCTTACATTTCGTCTTTACCAATCTCCTTTGCCT CCTCCCCCCATTCCTCCTGTTTTGGAGGGGTTGATACGCCATCGTTCCAG GCTCCAGCAAAGGCTTGCAACGCGGCCACGAGAAACAGCACATTTACACT TTATCCGACTTTCCCCTTGTCGGAAAGTTGCGATTCAATCATTCTTCTCA TCCTTACCCCCCCTCTTTTCAGGCAGACGAATACGCAGTCGATCTGGGTT ACGCCGAGGACTTACAGCGAGGGCTGGTCAAGCTGCAGGTAGGTCTCCCT CGTCCCCCCCTCCCCCTCTCTCTAGCGCGTACCTCGAGTCGAGAACCACC ACGCCCCGTCACGTCTCTTGTTGTTCGATTGCCCCTCCTGGCCCATGTCT ATCTCATCGATTCACGCTCACATTCCTGCACGCATTACTGTATCCTCATA CTCACGTTCTCGCATTCAGGTTGAGAATCTTTCCAACCCCTCCCCTGATC GATGGTATAGCTTCTACCATTACTCCCACCCGCCTCTGACGGAGCGATTG GCAGCAATATGTGCGCGGCAAGAGGGGAGGGAGAAGAAGAGGGGGTGA
back to top

Coding sequence (CDS) from alignment at chr8:833179..835226+

>NO08G02990.1 ID=NO08G02990.1|Name=NO08G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr8:833179..835226+ (Nannochloropsis oceanica)
ATGCCCCCAAATGATGCCTGGGCGATCATCCGCAATTTCGGATCGGAACT
TTCTTTCCCCACCTACAAGCAACAAGGGACTGGCATGGCGGACGTGCCAT
ACCTGGAGTTGATAGTCCTCTTCTCCTTCATCGTCTTTGTCTTTGAGTTC
TACCTGGACCTGCGGCAGTACGGGGCCTTGCAACGCAAGGACGTGCCTGA
AGCCTTGACGACACGCATCAGCGAGCTCGATCAGGCAGCCGCGTCGAAGA
ATGGAGGAGACTCGAAGGACAAGGATGGCACCACGACCCTGCTCGCTCGT
TTGACCTCGAAATTTGAAGCTGCAAGAAAATATTCTATTGATAAGGCGCA
TCTTGGGTTTGTTGAAACTCTCTTCTCCCAAATGGAAGCGACGGCGATGC
TCTTGCTTGGAAGTATGCCTTGGGTATGGGACATGTCGGTCAACTTAGCC
GGGAAATGGTTTGGGAAAGCAGAAGACGAGTATATCATCTCTCTCGTCTT
CCTAGGTATCAACATGGTGATTGAGAATATCATCCACCTACCCTTCTCCC
TTTGGTCCGTCTTTGTGGTCGAGCAACGGCATGGTTTCAACAAGCAGTCC
CTCAAGGACTTCCTCCTTGATAAAGTCAAGGCCGTCGCCCTCTCGGCCCT
CCTCGGCAGCCCTATGACCGTCGCTGTCCTCTATGTCATCAAAGCCGGCG
GTCGAAACTTTTTCCTCTACCTCTACCTTCTCGTGCTCGCCTTCCAGCTC
ATTCTCCTCACAGTCTATCCTACCGTCATCGCTCCAATCTTCAATAAATA
CGAACCTCTGGCGGAAGAATCTGAATTAAAACCTCAAATTGACGCCTTGG
CATCGCGGGTGAAGTTTCCGTTGACCAAGGTGTTTGTGGTAGATGGATCG
CGGAGAAGTGCGCATTCAAACGCGTATTTTTATGGGTTTTTTAAGAATAA
GCGGATTGTGCTGTTTGATACGCTGCTGACGCAGGTGCAATCCTCGGAGC
TGATTTCGATCCTCGCCCACGAGCTCGGGCACTGGGCGCACAGCCACACC
CTCCAAATGTTTTTCGTCAGTCAAGTGCACCTCTTCCTGGCCTTCTTCCT
CTTCTCCTCTTCTCTGGACAACGCCGACCTATTCCATTCGTTTGGCTTCG
CGACTCGCCCCACGATCATTGCTCTATTCCTCTTTTTTCAAGCGATTTGG
TCCCCGGTTGACAAGGCGTTGAGCTTTGGCTTCACGTTGTGGACCCGCAA
AAACGAGTTCCAGGCAGACGAATACGCAGTCGATCTGGGTTACGCCGAGG
ACTTACAGCGAGGGCTGGTCAAGCTGCAGGTTGAGAATCTTTCCAACCCC
TCCCCTGATCGATGGTATAGCTTCTACCATTACTCCCACCCGCCTCTGAC
GGAGCGATTGGCAGCAATATGTGCGCGGCAAGAGGGGAGGGAGAAGAAGA
GGGGGTGA
back to top
Synonyms
Publications