NO08G02960.1, NO08G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02960.1
Unique NameNO08G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1863
Alignment locationchr8:825525..827387 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:825525..827387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02960.1 vs.
Match: EWM26599.1 (th1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 723.0 bits (1865), Expect = 7.800e-205
Identity = 402/615 (65.37%), Postives = 469/615 (76.26%), Query Frame = 0
Query:    1 MNFIDEMMTWKGWRRTLMEIFAAHKESKLLGGYCMQHLSRAGHNTEMADLVSVDDYWSVARGVLTELLLQVPWADHVDLGRLVGTLTRICCGTAYLHSFSQEVLREVEVALMEEVGREGEGGREEGREQSLVAMTRKFRRIRQELERGSWEAAER---AGGGGSGKERVGRSRFVHRLSAWQAEAAPVNSAEKGDPMKAREGRKRLLGAILDVFSEGGLSDHTLAVLLDAYVDSSVLFKERKKEGEGKEDKEGEEGKWEDGDENDDDDDDDGLAKVKGPLAYLRHPQLLDALVKAIFDPKKRLNTASRRASACQILTVASTALFDGSVDREEADALYQGLREASTLLADEEMLTWNMSTSSIPPSLKGLLRAHPVVAMGFLHWLRVTIQDPEFHNSRQFNEVMRVLMRLLQFLVSERPLHHPAIFEALKALLTLKPTESSFNIIKMKRQALQCFVFLMSRGFVLPVLAFFHQILPEMDHALVRFFVGVTLVAAQPPYSPVFARALASLLREMVVRKALKSSLDDGHQEALLRFIETVCAEEGDAEEERGGKGEEEREEKELSPVKKKGGEADGEEEVEGGGAAAAVAANLLDPAMRKGLRLVYSHMLKKEKRKRR 613
            M FID+MM ++ WRRTLMEIFA HKESKLLGGYCMQHLSR GHNTEMADLVSV+DYWSVARGV+TELL +VPWADHV L RL   L RICC TAYLH+FSQ+VL  +E  L+       +        Q L+A  R+FRRIRQELE  +WEAAE+   A G   G     R RFVHRLSAWQAEA P+N  E+ DPM+A E R+R++  ++ +FSEG L+D   A LL+ YVD+++LF ERK+   G  +  G     E+G+E ++D+D   +A+++GPLA+LRHP+LL+ LV+AIFDPK RL+T +RRASACQ+L VASTAL DGSVDREEADALY GLR+AS LLADEEML WNM TS +PP LKGLLRAHPVVAMGFLHWLRVTIQDPEFHNSRQFNEVM V MRLLQFLV ERPLHHPAIFEAL+ALLTLKPTESSFNIIKMKRQALQC VFLMS GFVLPV+AFFH+ L EMDHALVR F+G+TLVAAQPPYS VFA ALASLLRE VV KAL+SSLD+  + AL++FIETVC  E D E +  G      + K+L  +    G +DG          AA  + LLDPAMRKGLRLVYS MLKK +  R+
Sbjct:   58 MVFIDDMMGYRRWRRTLMEIFAQHKESKLLGGYCMQHLSRTGHNTEMADLVSVEDYWSVARGVVTELLAEVPWADHVHLSRLSANLKRICCSTAYLHAFSQDVLWGLESKLLVRADASRDTSNIS-TAQGLMAANRRFRRIRQELESAAWEAAEQGIGAAGASQGGSWYNRCRFVHRLSAWQAEAPPLNLTEEDDPMEAVEKRRRVVDMLVVLFSEGRLTDVAAATLLETYVDANILFTERKEARTGAGEIPGST-TGEEGEEGEEDEDGHDIAQIRGPLAFLRHPRLLEVLVRAIFDPKDRLDTETRRASACQVLAVASTALEDGSVDREEADALYGGLRQASALLADEEMLRWNMCTSGMPPVLKGLLRAHPVVAMGFLHWLRVTIQDPEFHNSRQFNEVMHVFMRLLQFLVLERPLHHPAIFEALEALLTLKPTESSFNIIKMKRQALQCCVFLMSHGFVLPVVAFFHENLAEMDHALVRHFLGLTLVAAQPPYSSVFACALASLLRETVVSKALRSSLDEAPKRALVKFIETVC--ENDTEAKSNG------DYKQLQDIP---GLSDG---------PAASKSMLLDPAMRKGLRLVYSDMLKKRESDRQ 650          
The following BLAST results are available for this feature:
BLAST of NO08G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26599.17.800e-20565.37th1-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02960NO08G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02960.1NO08G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02960.1.cds1NO08G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02960.1 ID=NO08G02960.1|Name=NO08G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp
ATGAATTTTATCGATGAGATGATGACTTGGAAGGGGTGGAGACGGACGTT
GATGGAGATTTTTGCGGCACACAAAGAGAGCAAGCTGCTGGGAGGGTACT
GCATGCAGCATTTGAGCAGGGCGGGCCATAACACAGAGATGGCGGACTTG
GTGAGCGTGGATGACTATTGGAGTGTCGCGAGGGGGGTCTTGACCGAATT
GTTGTTACAAGTGCCTTGGGCGGATCACGTGGATTTGGGGAGGTTGGTGG
GCACTCTGACGCGAATATGCTGCGGGACGGCGTATTTACATTCGTTCAGT
CAGGAGGTCCTGAGGGAGGTGGAGGTGGCGTTGATGGAGGAAGTGGGGAG
GGAAGGCGAGGGAGGGAGGGAAGAAGGGAGGGAGCAGAGTTTGGTGGCGA
TGACGAGGAAGTTCCGGCGGATTCGGCAGGAGTTGGAGAGGGGGAGCTGG
GAAGCGGCGGAAAGGGCGGGTGGAGGGGGGAGTGGGAAGGAGAGGGTAGG
TAGAAGTCGGTTCGTGCATCGATTGAGTGCGTGGCAGGCAGAGGCAGCGC
CAGTGAATTCGGCAGAGAAAGGGGACCCGATGAAAGCGAGGGAGGGAAGG
AAAAGATTGCTGGGAGCAATATTGGACGTGTTCAGTGAGGGGGGATTGTC
GGACCACACATTGGCAGTATTGCTTGATGCGTATGTCGACTCATCCGTTT
TGTTCAAGGAGAGAAAGAAGGAGGGGGAAGGGAAGGAGGACAAGGAAGGG
GAGGAGGGTAAGTGGGAGGACGGTGACGAAAACGACGATGACGACGATGA
TGATGGGCTTGCCAAGGTGAAGGGTCCACTGGCCTACCTCCGCCATCCTC
AACTTCTCGATGCGTTGGTCAAAGCCATTTTTGACCCAAAAAAGAGGCTG
AACACTGCCTCTCGCCGAGCCTCGGCCTGCCAGATCTTGACCGTGGCAAG
CACGGCGTTGTTTGACGGCAGTGTGGACCGCGAGGAGGCTGATGCCCTTT
ACCAGGGCCTGAGGGAAGCGTCGACCTTACTGGCAGACGAAGAGATGCTG
ACGTGGAACATGAGTACGTCCAGCATACCCCCTTCCTTGAAAGGCCTGTT
GAGAGCCCACCCTGTGGTGGCCATGGGTTTCTTGCATTGGTTAAGGGTCA
CGATCCAAGACCCGGAGTTTCACAACTCGCGGCAATTCAACGAGGTGATG
AGAGTGCTCATGCGCTTATTGCAATTTTTGGTGAGTGAGCGACCATTGCA
CCACCCGGCGATTTTCGAGGCCCTAAAGGCGCTGTTGACCTTGAAGCCGA
CAGAAAGCTCGTTCAATATCATCAAGATGAAGAGGCAAGCCTTGCAGTGT
TTTGTGTTTCTGATGTCTCGGGGCTTTGTATTGCCGGTGCTGGCGTTCTT
CCATCAGATCCTGCCGGAGATGGATCATGCATTGGTGAGGTTTTTTGTGG
GTGTGACGCTGGTGGCGGCGCAACCCCCTTATTCGCCGGTGTTTGCTCGG
GCGCTTGCATCCTTGTTGAGGGAGATGGTTGTGAGAAAGGCATTGAAATC
AAGTTTGGATGACGGGCATCAGGAGGCTTTGCTCAGGTTTATTGAGACGG
TGTGTGCGGAGGAGGGGGATGCGGAGGAAGAAAGGGGGGGGAAAGGGGAG
GAGGAGAGAGAGGAGAAGGAATTGTCGCCGGTGAAGAAGAAAGGAGGAGA
AGCAGATGGAGAGGAAGAAGTAGAAGGAGGAGGAGCGGCAGCCGCAGTAG
CAGCAAATTTGTTGGACCCGGCAATGAGAAAGGGCCTGAGGTTGGTGTAT
TCCCACATGTTGAAAAAAGAGAAGAGGAAAAGGAGACGGATGAATGGGGA
GGGCGAAGGATGA
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protein sequence of NO08G02960.1

>NO08G02960.1-protein ID=NO08G02960.1-protein|Name=NO08G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MNFIDEMMTWKGWRRTLMEIFAAHKESKLLGGYCMQHLSRAGHNTEMADL
VSVDDYWSVARGVLTELLLQVPWADHVDLGRLVGTLTRICCGTAYLHSFS
QEVLREVEVALMEEVGREGEGGREEGREQSLVAMTRKFRRIRQELERGSW
EAAERAGGGGSGKERVGRSRFVHRLSAWQAEAAPVNSAEKGDPMKAREGR
KRLLGAILDVFSEGGLSDHTLAVLLDAYVDSSVLFKERKKEGEGKEDKEG
EEGKWEDGDENDDDDDDDGLAKVKGPLAYLRHPQLLDALVKAIFDPKKRL
NTASRRASACQILTVASTALFDGSVDREEADALYQGLREASTLLADEEML
TWNMSTSSIPPSLKGLLRAHPVVAMGFLHWLRVTIQDPEFHNSRQFNEVM
RVLMRLLQFLVSERPLHHPAIFEALKALLTLKPTESSFNIIKMKRQALQC
FVFLMSRGFVLPVLAFFHQILPEMDHALVRFFVGVTLVAAQPPYSPVFAR
ALASLLREMVVRKALKSSLDDGHQEALLRFIETVCAEEGDAEEERGGKGE
EEREEKELSPVKKKGGEADGEEEVEGGGAAAAVAANLLDPAMRKGLRLVY
SHMLKKEKRKRRRMNGEGEG*
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mRNA from alignment at chr8:825525..827387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02960.1 ID=NO08G02960.1|Name=NO08G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at chr8:825525..827387+ (Nannochloropsis oceanica)
ATGAATTTTATCGATGAGATGATGACTTGGAAGGGGTGGAGACGGACGTT GATGGAGATTTTTGCGGCACACAAAGAGAGCAAGCTGCTGGGAGGGTACT GCATGCAGCATTTGAGCAGGGCGGGCCATAACACAGAGATGGCGGACTTG GTGAGCGTGGATGACTATTGGAGTGTCGCGAGGGGGGTCTTGACCGAATT GTTGTTACAAGTGCCTTGGGCGGATCACGTGGATTTGGGGAGGTTGGTGG GCACTCTGACGCGAATATGCTGCGGGACGGCGTATTTACATTCGTTCAGT CAGGAGGTCCTGAGGGAGGTGGAGGTGGCGTTGATGGAGGAAGTGGGGAG GGAAGGCGAGGGAGGGAGGGAAGAAGGGAGGGAGCAGAGTTTGGTGGCGA TGACGAGGAAGTTCCGGCGGATTCGGCAGGAGTTGGAGAGGGGGAGCTGG GAAGCGGCGGAAAGGGCGGGTGGAGGGGGGAGTGGGAAGGAGAGGGTAGG TAGAAGTCGGTTCGTGCATCGATTGAGTGCGTGGCAGGCAGAGGCAGCGC CAGTGAATTCGGCAGAGAAAGGGGACCCGATGAAAGCGAGGGAGGGAAGG AAAAGATTGCTGGGAGCAATATTGGACGTGTTCAGTGAGGGGGGATTGTC GGACCACACATTGGCAGTATTGCTTGATGCGTATGTCGACTCATCCGTTT TGTTCAAGGAGAGAAAGAAGGAGGGGGAAGGGAAGGAGGACAAGGAAGGG GAGGAGGGTAAGTGGGAGGACGGTGACGAAAACGACGATGACGACGATGA TGATGGGCTTGCCAAGGTGAAGGGTCCACTGGCCTACCTCCGCCATCCTC AACTTCTCGATGCGTTGGTCAAAGCCATTTTTGACCCAAAAAAGAGGCTG AACACTGCCTCTCGCCGAGCCTCGGCCTGCCAGATCTTGACCGTGGCAAG CACGGCGTTGTTTGACGGCAGTGTGGACCGCGAGGAGGCTGATGCCCTTT ACCAGGGCCTGAGGGAAGCGTCGACCTTACTGGCAGACGAAGAGATGCTG ACGTGGAACATGAGTACGTCCAGCATACCCCCTTCCTTGAAAGGCCTGTT GAGAGCCCACCCTGTGGTGGCCATGGGTTTCTTGCATTGGTTAAGGGTCA CGATCCAAGACCCGGAGTTTCACAACTCGCGGCAATTCAACGAGGTGATG AGAGTGCTCATGCGCTTATTGCAATTTTTGGTGAGTGAGCGACCATTGCA CCACCCGGCGATTTTCGAGGCCCTAAAGGCGCTGTTGACCTTGAAGCCGA CAGAAAGCTCGTTCAATATCATCAAGATGAAGAGGCAAGCCTTGCAGTGT TTTGTGTTTCTGATGTCTCGGGGCTTTGTATTGCCGGTGCTGGCGTTCTT CCATCAGATCCTGCCGGAGATGGATCATGCATTGGTGAGGTTTTTTGTGG GTGTGACGCTGGTGGCGGCGCAACCCCCTTATTCGCCGGTGTTTGCTCGG GCGCTTGCATCCTTGTTGAGGGAGATGGTTGTGAGAAAGGCATTGAAATC AAGTTTGGATGACGGGCATCAGGAGGCTTTGCTCAGGTTTATTGAGACGG TGTGTGCGGAGGAGGGGGATGCGGAGGAAGAAAGGGGGGGGAAAGGGGAG GAGGAGAGAGAGGAGAAGGAATTGTCGCCGGTGAAGAAGAAAGGAGGAGA AGCAGATGGAGAGGAAGAAGTAGAAGGAGGAGGAGCGGCAGCCGCAGTAG CAGCAAATTTGTTGGACCCGGCAATGAGAAAGGGCCTGAGGTTGGTGTAT TCCCACATGTTGAAAAAAGAGAAGAGGAAAAGGAGACGGATGAATGGGGA GGGCGAAGGATGA
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Coding sequence (CDS) from alignment at chr8:825525..827387+

>NO08G02960.1 ID=NO08G02960.1|Name=NO08G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr8:825525..827387+ (Nannochloropsis oceanica)
ATGAATTTTATCGATGAGATGATGACTTGGAAGGGGTGGAGACGGACGTT
GATGGAGATTTTTGCGGCACACAAAGAGAGCAAGCTGCTGGGAGGGTACT
GCATGCAGCATTTGAGCAGGGCGGGCCATAACACAGAGATGGCGGACTTG
GTGAGCGTGGATGACTATTGGAGTGTCGCGAGGGGGGTCTTGACCGAATT
GTTGTTACAAGTGCCTTGGGCGGATCACGTGGATTTGGGGAGGTTGGTGG
GCACTCTGACGCGAATATGCTGCGGGACGGCGTATTTACATTCGTTCAGT
CAGGAGGTCCTGAGGGAGGTGGAGGTGGCGTTGATGGAGGAAGTGGGGAG
GGAAGGCGAGGGAGGGAGGGAAGAAGGGAGGGAGCAGAGTTTGGTGGCGA
TGACGAGGAAGTTCCGGCGGATTCGGCAGGAGTTGGAGAGGGGGAGCTGG
GAAGCGGCGGAAAGGGCGGGTGGAGGGGGGAGTGGGAAGGAGAGGGTAGG
TAGAAGTCGGTTCGTGCATCGATTGAGTGCGTGGCAGGCAGAGGCAGCGC
CAGTGAATTCGGCAGAGAAAGGGGACCCGATGAAAGCGAGGGAGGGAAGG
AAAAGATTGCTGGGAGCAATATTGGACGTGTTCAGTGAGGGGGGATTGTC
GGACCACACATTGGCAGTATTGCTTGATGCGTATGTCGACTCATCCGTTT
TGTTCAAGGAGAGAAAGAAGGAGGGGGAAGGGAAGGAGGACAAGGAAGGG
GAGGAGGGTAAGTGGGAGGACGGTGACGAAAACGACGATGACGACGATGA
TGATGGGCTTGCCAAGGTGAAGGGTCCACTGGCCTACCTCCGCCATCCTC
AACTTCTCGATGCGTTGGTCAAAGCCATTTTTGACCCAAAAAAGAGGCTG
AACACTGCCTCTCGCCGAGCCTCGGCCTGCCAGATCTTGACCGTGGCAAG
CACGGCGTTGTTTGACGGCAGTGTGGACCGCGAGGAGGCTGATGCCCTTT
ACCAGGGCCTGAGGGAAGCGTCGACCTTACTGGCAGACGAAGAGATGCTG
ACGTGGAACATGAGTACGTCCAGCATACCCCCTTCCTTGAAAGGCCTGTT
GAGAGCCCACCCTGTGGTGGCCATGGGTTTCTTGCATTGGTTAAGGGTCA
CGATCCAAGACCCGGAGTTTCACAACTCGCGGCAATTCAACGAGGTGATG
AGAGTGCTCATGCGCTTATTGCAATTTTTGGTGAGTGAGCGACCATTGCA
CCACCCGGCGATTTTCGAGGCCCTAAAGGCGCTGTTGACCTTGAAGCCGA
CAGAAAGCTCGTTCAATATCATCAAGATGAAGAGGCAAGCCTTGCAGTGT
TTTGTGTTTCTGATGTCTCGGGGCTTTGTATTGCCGGTGCTGGCGTTCTT
CCATCAGATCCTGCCGGAGATGGATCATGCATTGGTGAGGTTTTTTGTGG
GTGTGACGCTGGTGGCGGCGCAACCCCCTTATTCGCCGGTGTTTGCTCGG
GCGCTTGCATCCTTGTTGAGGGAGATGGTTGTGAGAAAGGCATTGAAATC
AAGTTTGGATGACGGGCATCAGGAGGCTTTGCTCAGGTTTATTGAGACGG
TGTGTGCGGAGGAGGGGGATGCGGAGGAAGAAAGGGGGGGGAAAGGGGAG
GAGGAGAGAGAGGAGAAGGAATTGTCGCCGGTGAAGAAGAAAGGAGGAGA
AGCAGATGGAGAGGAAGAAGTAGAAGGAGGAGGAGCGGCAGCCGCAGTAG
CAGCAAATTTGTTGGACCCGGCAATGAGAAAGGGCCTGAGGTTGGTGTAT
TCCCACATGTTGAAAAAAGAGAAGAGGAAAAGGAGACGGATGAATGGGGA
GGGCGAAGGATGA
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Synonyms
Publications