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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:825525..827387 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02960.1 vs.
Match: EWM26599.1 (th1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 723.0 bits (1865), Expect = 7.800e-205 Identity = 402/615 (65.37%), Postives = 469/615 (76.26%), Query Frame = 0
Query: 1 MNFIDEMMTWKGWRRTLMEIFAAHKESKLLGGYCMQHLSRAGHNTEMADLVSVDDYWSVARGVLTELLLQVPWADHVDLGRLVGTLTRICCGTAYLHSFSQEVLREVEVALMEEVGREGEGGREEGREQSLVAMTRKFRRIRQELERGSWEAAER---AGGGGSGKERVGRSRFVHRLSAWQAEAAPVNSAEKGDPMKAREGRKRLLGAILDVFSEGGLSDHTLAVLLDAYVDSSVLFKERKKEGEGKEDKEGEEGKWEDGDENDDDDDDDGLAKVKGPLAYLRHPQLLDALVKAIFDPKKRLNTASRRASACQILTVASTALFDGSVDREEADALYQGLREASTLLADEEMLTWNMSTSSIPPSLKGLLRAHPVVAMGFLHWLRVTIQDPEFHNSRQFNEVMRVLMRLLQFLVSERPLHHPAIFEALKALLTLKPTESSFNIIKMKRQALQCFVFLMSRGFVLPVLAFFHQILPEMDHALVRFFVGVTLVAAQPPYSPVFARALASLLREMVVRKALKSSLDDGHQEALLRFIETVCAEEGDAEEERGGKGEEEREEKELSPVKKKGGEADGEEEVEGGGAAAAVAANLLDPAMRKGLRLVYSHMLKKEKRKRR 613
M FID+MM ++ WRRTLMEIFA HKESKLLGGYCMQHLSR GHNTEMADLVSV+DYWSVARGV+TELL +VPWADHV L RL L RICC TAYLH+FSQ+VL +E L+ + Q L+A R+FRRIRQELE +WEAAE+ A G G R RFVHRLSAWQAEA P+N E+ DPM+A E R+R++ ++ +FSEG L+D A LL+ YVD+++LF ERK+ G + G E+G+E ++D+D +A+++GPLA+LRHP+LL+ LV+AIFDPK RL+T +RRASACQ+L VASTAL DGSVDREEADALY GLR+AS LLADEEML WNM TS +PP LKGLLRAHPVVAMGFLHWLRVTIQDPEFHNSRQFNEVM V MRLLQFLV ERPLHHPAIFEAL+ALLTLKPTESSFNIIKMKRQALQC VFLMS GFVLPV+AFFH+ L EMDHALVR F+G+TLVAAQPPYS VFA ALASLLRE VV KAL+SSLD+ + AL++FIETVC E D E + G + K+L + G +DG AA + LLDPAMRKGLRLVYS MLKK + R+
Sbjct: 58 MVFIDDMMGYRRWRRTLMEIFAQHKESKLLGGYCMQHLSRTGHNTEMADLVSVEDYWSVARGVVTELLAEVPWADHVHLSRLSANLKRICCSTAYLHAFSQDVLWGLESKLLVRADASRDTSNIS-TAQGLMAANRRFRRIRQELESAAWEAAEQGIGAAGASQGGSWYNRCRFVHRLSAWQAEAPPLNLTEEDDPMEAVEKRRRVVDMLVVLFSEGRLTDVAAATLLETYVDANILFTERKEARTGAGEIPGST-TGEEGEEGEEDEDGHDIAQIRGPLAFLRHPRLLEVLVRAIFDPKDRLDTETRRASACQVLAVASTALEDGSVDREEADALYGGLRQASALLADEEMLRWNMCTSGMPPVLKGLLRAHPVVAMGFLHWLRVTIQDPEFHNSRQFNEVMHVFMRLLQFLVLERPLHHPAIFEALEALLTLKPTESSFNIIKMKRQALQCCVFLMSHGFVLPVVAFFHENLAEMDHALVRHFLGLTLVAAQPPYSSVFACALASLLRETVVSKALRSSLDEAPKRALVKFIETVC--ENDTEAKSNG------DYKQLQDIP---GLSDG---------PAASKSMLLDPAMRKGLRLVYSDMLKKRESDRQ 650
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02960.1 ID=NO08G02960.1|Name=NO08G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp ATGAATTTTATCGATGAGATGATGACTTGGAAGGGGTGGAGACGGACGTT GATGGAGATTTTTGCGGCACACAAAGAGAGCAAGCTGCTGGGAGGGTACT GCATGCAGCATTTGAGCAGGGCGGGCCATAACACAGAGATGGCGGACTTG GTGAGCGTGGATGACTATTGGAGTGTCGCGAGGGGGGTCTTGACCGAATT GTTGTTACAAGTGCCTTGGGCGGATCACGTGGATTTGGGGAGGTTGGTGG GCACTCTGACGCGAATATGCTGCGGGACGGCGTATTTACATTCGTTCAGT CAGGAGGTCCTGAGGGAGGTGGAGGTGGCGTTGATGGAGGAAGTGGGGAG GGAAGGCGAGGGAGGGAGGGAAGAAGGGAGGGAGCAGAGTTTGGTGGCGA TGACGAGGAAGTTCCGGCGGATTCGGCAGGAGTTGGAGAGGGGGAGCTGG GAAGCGGCGGAAAGGGCGGGTGGAGGGGGGAGTGGGAAGGAGAGGGTAGG TAGAAGTCGGTTCGTGCATCGATTGAGTGCGTGGCAGGCAGAGGCAGCGC CAGTGAATTCGGCAGAGAAAGGGGACCCGATGAAAGCGAGGGAGGGAAGG AAAAGATTGCTGGGAGCAATATTGGACGTGTTCAGTGAGGGGGGATTGTC GGACCACACATTGGCAGTATTGCTTGATGCGTATGTCGACTCATCCGTTT TGTTCAAGGAGAGAAAGAAGGAGGGGGAAGGGAAGGAGGACAAGGAAGGG GAGGAGGGTAAGTGGGAGGACGGTGACGAAAACGACGATGACGACGATGA TGATGGGCTTGCCAAGGTGAAGGGTCCACTGGCCTACCTCCGCCATCCTC AACTTCTCGATGCGTTGGTCAAAGCCATTTTTGACCCAAAAAAGAGGCTG AACACTGCCTCTCGCCGAGCCTCGGCCTGCCAGATCTTGACCGTGGCAAG CACGGCGTTGTTTGACGGCAGTGTGGACCGCGAGGAGGCTGATGCCCTTT ACCAGGGCCTGAGGGAAGCGTCGACCTTACTGGCAGACGAAGAGATGCTG ACGTGGAACATGAGTACGTCCAGCATACCCCCTTCCTTGAAAGGCCTGTT GAGAGCCCACCCTGTGGTGGCCATGGGTTTCTTGCATTGGTTAAGGGTCA CGATCCAAGACCCGGAGTTTCACAACTCGCGGCAATTCAACGAGGTGATG AGAGTGCTCATGCGCTTATTGCAATTTTTGGTGAGTGAGCGACCATTGCA CCACCCGGCGATTTTCGAGGCCCTAAAGGCGCTGTTGACCTTGAAGCCGA CAGAAAGCTCGTTCAATATCATCAAGATGAAGAGGCAAGCCTTGCAGTGT TTTGTGTTTCTGATGTCTCGGGGCTTTGTATTGCCGGTGCTGGCGTTCTT CCATCAGATCCTGCCGGAGATGGATCATGCATTGGTGAGGTTTTTTGTGG GTGTGACGCTGGTGGCGGCGCAACCCCCTTATTCGCCGGTGTTTGCTCGG GCGCTTGCATCCTTGTTGAGGGAGATGGTTGTGAGAAAGGCATTGAAATC AAGTTTGGATGACGGGCATCAGGAGGCTTTGCTCAGGTTTATTGAGACGG TGTGTGCGGAGGAGGGGGATGCGGAGGAAGAAAGGGGGGGGAAAGGGGAG GAGGAGAGAGAGGAGAAGGAATTGTCGCCGGTGAAGAAGAAAGGAGGAGA AGCAGATGGAGAGGAAGAAGTAGAAGGAGGAGGAGCGGCAGCCGCAGTAG CAGCAAATTTGTTGGACCCGGCAATGAGAAAGGGCCTGAGGTTGGTGTAT TCCCACATGTTGAAAAAAGAGAAGAGGAAAAGGAGACGGATGAATGGGGA GGGCGAAGGATGA back to topprotein sequence of NO08G02960.1 >NO08G02960.1-protein ID=NO08G02960.1-protein|Name=NO08G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp MNFIDEMMTWKGWRRTLMEIFAAHKESKLLGGYCMQHLSRAGHNTEMADL VSVDDYWSVARGVLTELLLQVPWADHVDLGRLVGTLTRICCGTAYLHSFS QEVLREVEVALMEEVGREGEGGREEGREQSLVAMTRKFRRIRQELERGSW EAAERAGGGGSGKERVGRSRFVHRLSAWQAEAAPVNSAEKGDPMKAREGR KRLLGAILDVFSEGGLSDHTLAVLLDAYVDSSVLFKERKKEGEGKEDKEG EEGKWEDGDENDDDDDDDGLAKVKGPLAYLRHPQLLDALVKAIFDPKKRL NTASRRASACQILTVASTALFDGSVDREEADALYQGLREASTLLADEEML TWNMSTSSIPPSLKGLLRAHPVVAMGFLHWLRVTIQDPEFHNSRQFNEVM RVLMRLLQFLVSERPLHHPAIFEALKALLTLKPTESSFNIIKMKRQALQC FVFLMSRGFVLPVLAFFHQILPEMDHALVRFFVGVTLVAAQPPYSPVFAR ALASLLREMVVRKALKSSLDDGHQEALLRFIETVCAEEGDAEEERGGKGE EEREEKELSPVKKKGGEADGEEEVEGGGAAAAVAANLLDPAMRKGLRLVY SHMLKKEKRKRRRMNGEGEG* back to topmRNA from alignment at chr8:825525..827387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02960.1 ID=NO08G02960.1|Name=NO08G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at chr8:825525..827387+ (Nannochloropsis oceanica) ATGAATTTTATCGATGAGATGATGACTTGGAAGGGGTGGAGACGGACGTT
GATGGAGATTTTTGCGGCACACAAAGAGAGCAAGCTGCTGGGAGGGTACT
GCATGCAGCATTTGAGCAGGGCGGGCCATAACACAGAGATGGCGGACTTG
GTGAGCGTGGATGACTATTGGAGTGTCGCGAGGGGGGTCTTGACCGAATT
GTTGTTACAAGTGCCTTGGGCGGATCACGTGGATTTGGGGAGGTTGGTGG
GCACTCTGACGCGAATATGCTGCGGGACGGCGTATTTACATTCGTTCAGT
CAGGAGGTCCTGAGGGAGGTGGAGGTGGCGTTGATGGAGGAAGTGGGGAG
GGAAGGCGAGGGAGGGAGGGAAGAAGGGAGGGAGCAGAGTTTGGTGGCGA
TGACGAGGAAGTTCCGGCGGATTCGGCAGGAGTTGGAGAGGGGGAGCTGG
GAAGCGGCGGAAAGGGCGGGTGGAGGGGGGAGTGGGAAGGAGAGGGTAGG
TAGAAGTCGGTTCGTGCATCGATTGAGTGCGTGGCAGGCAGAGGCAGCGC
CAGTGAATTCGGCAGAGAAAGGGGACCCGATGAAAGCGAGGGAGGGAAGG
AAAAGATTGCTGGGAGCAATATTGGACGTGTTCAGTGAGGGGGGATTGTC
GGACCACACATTGGCAGTATTGCTTGATGCGTATGTCGACTCATCCGTTT
TGTTCAAGGAGAGAAAGAAGGAGGGGGAAGGGAAGGAGGACAAGGAAGGG
GAGGAGGGTAAGTGGGAGGACGGTGACGAAAACGACGATGACGACGATGA
TGATGGGCTTGCCAAGGTGAAGGGTCCACTGGCCTACCTCCGCCATCCTC
AACTTCTCGATGCGTTGGTCAAAGCCATTTTTGACCCAAAAAAGAGGCTG
AACACTGCCTCTCGCCGAGCCTCGGCCTGCCAGATCTTGACCGTGGCAAG
CACGGCGTTGTTTGACGGCAGTGTGGACCGCGAGGAGGCTGATGCCCTTT
ACCAGGGCCTGAGGGAAGCGTCGACCTTACTGGCAGACGAAGAGATGCTG
ACGTGGAACATGAGTACGTCCAGCATACCCCCTTCCTTGAAAGGCCTGTT
GAGAGCCCACCCTGTGGTGGCCATGGGTTTCTTGCATTGGTTAAGGGTCA
CGATCCAAGACCCGGAGTTTCACAACTCGCGGCAATTCAACGAGGTGATG
AGAGTGCTCATGCGCTTATTGCAATTTTTGGTGAGTGAGCGACCATTGCA
CCACCCGGCGATTTTCGAGGCCCTAAAGGCGCTGTTGACCTTGAAGCCGA
CAGAAAGCTCGTTCAATATCATCAAGATGAAGAGGCAAGCCTTGCAGTGT
TTTGTGTTTCTGATGTCTCGGGGCTTTGTATTGCCGGTGCTGGCGTTCTT
CCATCAGATCCTGCCGGAGATGGATCATGCATTGGTGAGGTTTTTTGTGG
GTGTGACGCTGGTGGCGGCGCAACCCCCTTATTCGCCGGTGTTTGCTCGG
GCGCTTGCATCCTTGTTGAGGGAGATGGTTGTGAGAAAGGCATTGAAATC
AAGTTTGGATGACGGGCATCAGGAGGCTTTGCTCAGGTTTATTGAGACGG
TGTGTGCGGAGGAGGGGGATGCGGAGGAAGAAAGGGGGGGGAAAGGGGAG
GAGGAGAGAGAGGAGAAGGAATTGTCGCCGGTGAAGAAGAAAGGAGGAGA
AGCAGATGGAGAGGAAGAAGTAGAAGGAGGAGGAGCGGCAGCCGCAGTAG
CAGCAAATTTGTTGGACCCGGCAATGAGAAAGGGCCTGAGGTTGGTGTAT
TCCCACATGTTGAAAAAAGAGAAGAGGAAAAGGAGACGGATGAATGGGGA
GGGCGAAGGATGA back to topCoding sequence (CDS) from alignment at chr8:825525..827387+ >NO08G02960.1 ID=NO08G02960.1|Name=NO08G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr8:825525..827387+ (Nannochloropsis oceanica) ATGAATTTTATCGATGAGATGATGACTTGGAAGGGGTGGAGACGGACGTT GATGGAGATTTTTGCGGCACACAAAGAGAGCAAGCTGCTGGGAGGGTACT GCATGCAGCATTTGAGCAGGGCGGGCCATAACACAGAGATGGCGGACTTG GTGAGCGTGGATGACTATTGGAGTGTCGCGAGGGGGGTCTTGACCGAATT GTTGTTACAAGTGCCTTGGGCGGATCACGTGGATTTGGGGAGGTTGGTGG GCACTCTGACGCGAATATGCTGCGGGACGGCGTATTTACATTCGTTCAGT CAGGAGGTCCTGAGGGAGGTGGAGGTGGCGTTGATGGAGGAAGTGGGGAG GGAAGGCGAGGGAGGGAGGGAAGAAGGGAGGGAGCAGAGTTTGGTGGCGA TGACGAGGAAGTTCCGGCGGATTCGGCAGGAGTTGGAGAGGGGGAGCTGG GAAGCGGCGGAAAGGGCGGGTGGAGGGGGGAGTGGGAAGGAGAGGGTAGG TAGAAGTCGGTTCGTGCATCGATTGAGTGCGTGGCAGGCAGAGGCAGCGC CAGTGAATTCGGCAGAGAAAGGGGACCCGATGAAAGCGAGGGAGGGAAGG AAAAGATTGCTGGGAGCAATATTGGACGTGTTCAGTGAGGGGGGATTGTC GGACCACACATTGGCAGTATTGCTTGATGCGTATGTCGACTCATCCGTTT TGTTCAAGGAGAGAAAGAAGGAGGGGGAAGGGAAGGAGGACAAGGAAGGG GAGGAGGGTAAGTGGGAGGACGGTGACGAAAACGACGATGACGACGATGA TGATGGGCTTGCCAAGGTGAAGGGTCCACTGGCCTACCTCCGCCATCCTC AACTTCTCGATGCGTTGGTCAAAGCCATTTTTGACCCAAAAAAGAGGCTG AACACTGCCTCTCGCCGAGCCTCGGCCTGCCAGATCTTGACCGTGGCAAG CACGGCGTTGTTTGACGGCAGTGTGGACCGCGAGGAGGCTGATGCCCTTT ACCAGGGCCTGAGGGAAGCGTCGACCTTACTGGCAGACGAAGAGATGCTG ACGTGGAACATGAGTACGTCCAGCATACCCCCTTCCTTGAAAGGCCTGTT GAGAGCCCACCCTGTGGTGGCCATGGGTTTCTTGCATTGGTTAAGGGTCA CGATCCAAGACCCGGAGTTTCACAACTCGCGGCAATTCAACGAGGTGATG AGAGTGCTCATGCGCTTATTGCAATTTTTGGTGAGTGAGCGACCATTGCA CCACCCGGCGATTTTCGAGGCCCTAAAGGCGCTGTTGACCTTGAAGCCGA CAGAAAGCTCGTTCAATATCATCAAGATGAAGAGGCAAGCCTTGCAGTGT TTTGTGTTTCTGATGTCTCGGGGCTTTGTATTGCCGGTGCTGGCGTTCTT CCATCAGATCCTGCCGGAGATGGATCATGCATTGGTGAGGTTTTTTGTGG GTGTGACGCTGGTGGCGGCGCAACCCCCTTATTCGCCGGTGTTTGCTCGG GCGCTTGCATCCTTGTTGAGGGAGATGGTTGTGAGAAAGGCATTGAAATC AAGTTTGGATGACGGGCATCAGGAGGCTTTGCTCAGGTTTATTGAGACGG TGTGTGCGGAGGAGGGGGATGCGGAGGAAGAAAGGGGGGGGAAAGGGGAG GAGGAGAGAGAGGAGAAGGAATTGTCGCCGGTGAAGAAGAAAGGAGGAGA AGCAGATGGAGAGGAAGAAGTAGAAGGAGGAGGAGCGGCAGCCGCAGTAG CAGCAAATTTGTTGGACCCGGCAATGAGAAAGGGCCTGAGGTTGGTGTAT TCCCACATGTTGAAAAAAGAGAAGAGGAAAAGGAGACGGATGAATGGGGA GGGCGAAGGATGA back to top
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