NO08G02940.1, NO08G02940.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G02940.1
Unique Name	NO08G02940.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1905
Alignment location	chr8:819721..822186 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:819721..822186 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G02940.1 vs.
Match: EWM26764.1 (nucleoside diphosphate kinase [Nannochloropsis gaditana])

HSP 1 Score: 366.3 bits (939), Expect = 6.900e-98
Identity = 185/230 (80.43%), Postives = 201/230 (87.39%), Query Frame = 0

Query:    1 MFSSTVRRCLQRTAGVRAFSSSMARASASSAKGASVQALGGLALVAAGAAWAAQEMRFGAPAHCSAAAKVPHTGLPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVGMKMLWPTKAKAESHYSDLSTKPFFAGLVAYFSSGPIIAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDMAISVGRNICHGSDGPESAVHEIGNWFTEAEISDYTRSLDEWIVADN 231
            MF++T+ RCL+R AG+RAFSSSM R +A +AK AS + LGGLAL AAG  WAAQ   F  P  CSA  K P TG+PGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLV +KMLWPTK KAESHY+DL+TKPFF GLVAYFSSGPI+AMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGD+AISVGRNICHGSDGPESAVHEI NWFT  E+SDY RSLDEWIV+DN
Sbjct:    1 MFATTMTRCLRRAAGIRAFSSSMGRTTAFTAKRASYRVLGGLALFAAGTVWAAQGAHFDTPTLCSAG-KAPFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229

The following BLAST results are available for this feature:

BLAST of NO08G02940.1 vs.

BLAST of NO08G02940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26764.1	6.900e-98	80.43	nucleoside diphosphate kinase [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G02940	NO08G02940	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02940.1	NO08G02940.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02940.1.cds1	NO08G02940.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02940.1.cds2	NO08G02940.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02940.1.cds3	NO08G02940.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02940.1.cds4	NO08G02940.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:819721..822186-
coding sequence from alignment at chr8:819721..822186-

mRNA sequence

>NO08G02940.1 ID=NO08G02940.1|Name=NO08G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
ATCGTATTTCTCTTTTAACGCTTCGATGTGATCGTGGCTCCGAAATCGGG
TGTGGGTGGGATGTTGGGGGAGACGAGTGTTCTGACGGCAGGGACCAAGG
AGACAATGCGTTTCCAGCGAAACTGCCTTTTAAATGAGCGTATCAGGATA
AGGGCCGAGGGTTGTTGAAAGGTCGTCTTGAAACTGGAGGAGCATGACGC
GAGTATAACGTGCAGCTCTTGCGGTCTGGTCAACGAAGGGTTAGGGGGCA
GCAAAATCTTCAAGTATGAACGTTGTGGGCACGATGAAGACCGGGATATG
AAGGCTGCCAAGAACCACTTGCTAAAGGAATTCGTCGGTAGGTGGTATAA
ATACTTCAAGAAGGGATAGTCATACAGTATAGGGGTGTCGTTGTTTGCCC
CATAACGCTTTTTGGTGAGCATTGTATTTGAAGTCAGGTGCGCGCATGAA
AGCCTGTCTTACAAATAGATATGCGAGAAAAGGCATGTAACGGTTACATA
AAAAGGCATTCTCTCCATTCTGTCAGCAACTCTTCATCATACAGCGAAGT
ATGACAACTTAAAAGAAATTTTTGAAACAATCTTTGGCAAAGATGTCATC
TCCCAAACAACAGGGTCGCGCGCCTACCTCCCCATCCGACTCGCACGACG
ATCGACCGGATTCGATTTAGCGAGGGGAATTATCGATTGATCTTGGTCGC
ATTCCAATGGCTGTTAACTTTCACTTAGCGCTGCCGGCACTGCGTGATGT
GTATTCCTTCATTCGTTTGTAAAGGCTAAGAGTAAAGCTTTGAACCTCCC
AACCTCCCCTCTCACCGTCATGCTGGACGAACCCAACGCAACTCATACCA
AGCAAGTAGCACTCTTCCCAGCCAAACACCACGATGTTCAGCTCTACCGT
CCGTCGTTGCCTGCAGCGCACTGCCGGCGTCCGTGCCTTCTCCTCCTCCA
TGGCCCGTGCGTCGGCCTCCTCCGCCAAAGGCGCTTCTGTCCAGGCACTT
GGTGGCTTGGCCCTGGTCGCGGCAGGCGCAGCATGGGCCGCTCAAGAAAT
GCGCTTTGGCGCGCCTGCTCACTGCTCGGCGGCGGCCAAGGTGCCCCATA
CAGGCTTACCGGGGACGGACAAGGAGCGCACCTTCATCGCCATCAAGCCC
GATGGCGTGCAGCGCGGCCTCATTGCCGCCATTATCGCCCGCTTCGAGAA
CAAGGGCTTCAAGCTTGTGGGTATGAAGATGTTGTGGCCCACCAAGGCAA
AGGCGGAGAGCCACTACTCTGACCTTTCCACCAAGCCGTTTTTCGCGGGC
CTCGTAGCCTACTTCTCGTCCGGGCCCATCATCGCCATGGTCTGGGAGGG
CAAGGACGCCATCAAGACCGGCCGTGTCCTCCTAGGAGCGACCAACCCCG
CCGCGGCCGTGCCTGGCACTATCCGTGGTGACATGGCCATCAGCGTCGGC
CGCAATATTTGTCACGGCTCGGACGGACCGGAGTCGGCAGTGCATGAGAT
CGGGAACTGGTTCACGGAGGCGGAGATTTCGGACTACACCCGTAGCTTGG
ATGAGTGGATTGTGGCGGACAACTAGGGCGGAGGGGAGATAGGGCATTAG
AATCGAAAGAAGGAGAAGAAAGGAGTGGGGGATCTTATTATTCCTCCCCT
CTCTTCCTTTCACAGTGGCCTTAAATGGTGGTGCCCGTGGAGGAATAGTA
GGTTAGAGGAAGTTTAGAGCAAGTTGATGGATAGCTGACTGTAAATGCGC
TTTGAAGGAAGGCGAGGCGGGTAAGAGAGTAGAGGCAGTGATGTCTCCTT
CTTGTTACTTTGTCTTGTCTCCTTTCTTGGCTTCTCTTTGCGTAGACACT
GCGGAGCTTTAAGAACCAGTGGAGAAAACATATCAGCAAACAAATATATC
GGGAT

protein sequence of NO08G02940.1

>NO08G02940.1-protein ID=NO08G02940.1-protein|Name=NO08G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MFSSTVRRCLQRTAGVRAFSSSMARASASSAKGASVQALGGLALVAAGAA
WAAQEMRFGAPAHCSAAAKVPHTGLPGTDKERTFIAIKPDGVQRGLIAAI
IARFENKGFKLVGMKMLWPTKAKAESHYSDLSTKPFFAGLVAYFSSGPII
AMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDMAISVGRNICHGSDGPE
SAVHEIGNWFTEAEISDYTRSLDEWIVADN*

mRNA from alignment at chr8:819721..822186-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G02940.1 ID=NO08G02940.1|Name=NO08G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2466bp|location=Sequence derived from alignment at chr8:819721..822186- (Nannochloropsis oceanica)
ATCGTATTTCTCTTTTAACGCTTCGATGTGATCGTGGCTCCGAAATCGGG
TGTGGGTGGGATGTTGGGGGAGACGAGTGTTCTGACGGCAGGGACCAAGG
AGACAATGCGTTTCCAGCGAAACTGCCTTTTAAATGAGCGTATCAGGATA
AGGGCCGAGGGTTGTTGAAAGGTCGTCTTGAAACTGGAGGAGCATGACGC
GAGTATAACGTGCAGCTCTTGCGGTCTGGTCAACGAAGGGTTAGGGGGCA
GCAAAATCTTCAAGTATGAACGTTGTGGGCACGATGAAGACCGGGATATG
AAGGCTGCCAAGAACCACTTGCTAAAGGAATTCGTCGGTAGGTGGTATAA
ATACTTCAAGAAGGGATAGTCATACAGTATAGGGGTGTCGTTGTTTGCCC
CATAACGCTTTTTGGTGAGCATTGTATTTGAAGTCAGGTGCGCGCATGAA
AGCCTGTCTTACAAATAGATATGCGAGAAAAGGCATGTAACGGTTACATA
AAAAGGCATTCTCTCCATTCTGTCAGCAACTCTTCATCATACAGCGAAGT
ATGACAACTTAAAAGAAATTTTTGAAACAATCTTTGGCAAAGATGTCATC
TCCCAAACAACAGGGTCGCGCGCCTACCTCCCCATCCGACTCGCACGACG
ATCGACCGGATTCGATTTAGCGAGGGGAATTATCGATTGATCTTGGTCGC
ATTCCAATGGCTGTTAACTTTCACTTAGCGCTGCCGGCACTGCGTGATGT
GTATTCCTTCATTCGTTTGTAAAGGCTAAGAGTAAAGCTTTGAACCTCCC
AACCTCCCCTCTCACCGTCATGCTGGACGAACCCAACGCAACTCATACCA
AGCAAGTAGCACTCTTCCCAGCCAAACACCACGATGTTCAGCTCTACCGT
CCGTCGTTGCCTGCAGCGCACTGCCGGCGTCCGTGCCTTCTCCTCCTCCA
TGTACGTACCTATTGTCCCGTTGGTGGATGGAGACGAATTGGCAAGTCTG
GATAGGGGTGAGGGAGGGTATGATAAATGGTTGAGACGACCTGAAGTAAA
GCGTCTATGTGTATCTACATATGCACACACTCAAGAAAAAGCATAAAGCG
CTTTGGCGCATAGATGTTCTGGGTCACAAGCATGTCTGAAAGTCTTTCAG
ACACATAGCGCTGCCTTTTTGATCGCTTTTTCTCATGCCCACCCCTCAAT
TCTCCGTTCCACAGGGCCCGTGCGTCGGCCTCCTCCGCCAAAGGCGCTTC
TGTCCAGGCACTTGGTGGCTTGGCCCTGGTCGCGGCAGGCGCAGCATGGG
CCGCTCAAGAAATGCGCTTTGGCGCGCCTGCTCACTGCTCGGCGGCGGCC
AAGGTGCCCCATACAGGCTTACCGGGGACGGACAAGGTTCGTGAGAGAGG
GCCAGAAATGCCTCAGAGGAGGAAAATATCGTTTGTTTTACGACTTATCA
TGGGTTTCACCCTTTCTACCTCCCCACAGGAGCGCACCTTCATCGCCATC
AAGCCCGATGGCGTGCAGCGCGGCCTCATTGCCGCCATTATCGCCCGCTT
CGAGAACAAGGGCTTCAAGCTTGTGGGTATGAAGATGTTGTGGCCCACCA
AGGCAAAGGCGGAGAGCCACTACTCTGACCTTTCCACCAAGCCGTTTTTC
GCGGTACGTTTGGAAGGGTAAATGGGCTCGTGAGAGGTGGTAGTGATTCT
TCTCCTGGTTTCGCTCCGTCCCTTCCTTTATCTTCTTTTCTTGTCGTCGT
CCACCGTTACTTGCGTGTCTCTTCATATCCTTCTTCAATCAAAGGCGAAA
TGTTTCTCCTTTCCCCCTCCTCCTCCTTCCATGCCTTCCCGTCCTCCCCT
CAAAACAGGGCCTCGTAGCCTACTTCTCGTCCGGGCCCATCATCGCCATG
GTCTGGGAGGGCAAGGACGCCATCAAGACCGGCCGTGTCCTCCTAGGAGC
GACCAACCCCGCCGCGGCCGTGCCTGGCACTATCCGTGGTGACATGGCCA
TCAGCGTCGGCCGCAATATTTGTCACGGCTCGGACGGACCGGAGTCGGCA
GTGCATGAGATCGGGAACTGGTTCACGGAGGCGGAGATTTCGGACTACAC
CCGTAGCTTGGATGAGTGGATTGTGGCGGACAACTAGGGCGGAGGGGAGA
TAGGGCATTAGAATCGAAAGAAGGAGAAGAAAGGAGTGGGGGATCTTATT
ATTCCTCCCCTCTCTTCCTTTCACAGTGGCCTTAAATGGTGGTGCCCGTG
GAGGAATAGTAGGTTAGAGGAAGTTTAGAGCAAGTTGATGGATAGCTGAC
TGTAAATGCGCTTTGAAGGAAGGCGAGGCGGGTAAGAGAGTAGAGGCAGT
GATGTCTCCTTCTTGTTACTTTGTCTTGTCTCCTTTCTTGGCTTCTCTTT
GCGTAGACACTGCGGAGCTTTAAGAACCAGTGGAGAAAACATATCAGCAA
ACAAATATATCGGGAT

Coding sequence (CDS) from alignment at chr8:819721..822186-

>NO08G02940.1 ID=NO08G02940.1|Name=NO08G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr8:819721..822186- (Nannochloropsis oceanica)
ATGTTCAGCTCTACCGTCCGTCGTTGCCTGCAGCGCACTGCCGGCGTCCG
TGCCTTCTCCTCCTCCATGGCCCGTGCGTCGGCCTCCTCCGCCAAAGGCG
CTTCTGTCCAGGCACTTGGTGGCTTGGCCCTGGTCGCGGCAGGCGCAGCA
TGGGCCGCTCAAGAAATGCGCTTTGGCGCGCCTGCTCACTGCTCGGCGGC
GGCCAAGGTGCCCCATACAGGCTTACCGGGGACGGACAAGGAGCGCACCT
TCATCGCCATCAAGCCCGATGGCGTGCAGCGCGGCCTCATTGCCGCCATT
ATCGCCCGCTTCGAGAACAAGGGCTTCAAGCTTGTGGGTATGAAGATGTT
GTGGCCCACCAAGGCAAAGGCGGAGAGCCACTACTCTGACCTTTCCACCA
AGCCGTTTTTCGCGGGCCTCGTAGCCTACTTCTCGTCCGGGCCCATCATC
GCCATGGTCTGGGAGGGCAAGGACGCCATCAAGACCGGCCGTGTCCTCCT
AGGAGCGACCAACCCCGCCGCGGCCGTGCCTGGCACTATCCGTGGTGACA
TGGCCATCAGCGTCGGCCGCAATATTTGTCACGGCTCGGACGGACCGGAG
TCGGCAGTGCATGAGATCGGGAACTGGTTCACGGAGGCGGAGATTTCGGA
CTACACCCGTAGCTTGGATGAGTGGATTGTGGCGGACAACTAG

Synonyms

Publications