NO08G02900.2, NO08G02900.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02900.2
Unique NameNO08G02900.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1971
Alignment locationchr8:812378..814861 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:812378..814861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02900.2 vs.
Match: XP_005852516.1 (solute carrier family 25 (mitochondrial carrier citrate transporter) member 1 [Nannochloropsis gaditana CCMP526]; EKU23319.1 solute carrier family 25 (mitochondrial carrier citrate transporter) member 1 [Nannochloropsis gaditana CCMP526]; EWM26577.1 solute carrier family 25 (mitochondrial carrier citrate transporter) member 1 [Nannochloropsis gaditana])

HSP 1 Score: 536.6 bits (1381), Expect = 5.900e-149
Identity = 267/296 (90.20%), Postives = 282/296 (95.27%), Query Frame = 0 
Query:   54 MAPIGNKPTHKGKAVLAGGLSGAFEICCTFPTEYVKTTQQLSSKSMSVKQVISNTMAESGVLGFYRGLSSMLYFAAPKAAIRFSAFEFFSSCLTDADGGDKFGLGQAKGFLAGLGAGTMEAIFVTTPQETIKIKLIHDQFRGTNKYNGFFHGVKTIVADEKISGVYRGLLPTIMKVSTAQATRFGIFTVIKDYVKLDTPIKSAAAGATAGGISVLAFQGIDVVKSRMQGLEAAKYTSTLDCVGQIMKNEGIAGFYKGVGPRLTRVCLEVGITMSLYGEIVKFLDSIWDTT-PKVPM 349
            MAPIGNKPTHKGKAVLAGGLSGAFEICCTFPTEYVKTTQQLS + +SVKQVIS TMAE G  GFYRGLSSMLYFAAPKAAIRFS+FEFFS  LTDA+GGDK+GLGQAKGFLAGLGAGTMEAIFVTTPQETIKIKLIHDQFRGTNKY GFFHGV+TIVA+EK+SGVYRGLLPTI+KVSTAQATRFGIF+VIKDYVKLDTPIKSAAAGATAGGISVLAFQGIDVVKSRMQGLEAAKY ST DCVGQI+KNEG+AGFYKGVGPRLTRVCLEVGITMS+YGEIVK LD++WDT  PKVPM
Sbjct:    1 MAPIGNKPTHKGKAVLAGGLSGAFEICCTFPTEYVKTTQQLSPRPVSVKQVISETMAERGFFGFYRGLSSMLYFAAPKAAIRFSSFEFFSGLLTDANGGDKYGLGQAKGFLAGLGAGTMEAIFVTTPQETIKIKLIHDQFRGTNKYQGFFHGVRTIVAEEKLSGVYRGLLPTILKVSTAQATRFGIFSVIKDYVKLDTPIKSAAAGATAGGISVLAFQGIDVVKSRMQGLEAAKYKSTWDCVGQILKNEGVAGFYKGVGPRLTRVCLEVGITMSMYGEIVKLLDAVWDTNPPKVPM 296
The following BLAST results are available for this feature:
BLAST of NO08G02900.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852516.15.900e-14990.20solute carrier family 25 (mitochondrial carrier ci... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02900NO08G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02900.2NO08G02900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02900.2.cds1NO08G02900.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02900.2.cds2NO08G02900.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02900.2.cds3NO08G02900.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02900.2.cds4NO08G02900.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02900.2 ID=NO08G02900.2|Name=NO08G02900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1971bp
CCAGATTCTTTCATTGCCCCTTTCAAAGACCTAACATCGGAAAGGGATTC
GACGAGATGCATTATCAGTTTGCATCAATGTCTCAGCAAAGGTACATCAT
GCGCCCGCTCGTGTCGTGAGCCCTCGGCCTCCACCAAAATTGGATCGAGG
ATCGGAGTCGCCGCTATCGTGCAAATTCCACGCACCCACATCACAGCGTA
CGCCACACATACCACCGCCTTGTTTTTCTTTTATATACACATCATTTACC
GGGACAACAGCGGAAGGAGGAGCAGCAGGTACAGTAGAGCAGGGTATCAA
TGTGCTAGCAGCACCCGCCCTTCTTATGATGACGTTGGCATGTCGAACCT
CGTCAGCCCGAAAGCTAGTACAAGGACCAAGCAATAGCACACCTGCCGGC
ATCCCTGTAGTCGTCGCATACATGCATTATTAAGCGCTGATTAATGAGAT
GCACGCACCTGCACATGCTTCACCGTGGCCTGGAGCGCTTATGAAGCACA
GAAGCATAGAAGCTCGCATTCGACCACTGCACAACACCCGCACTTCACTC
CCCCCTTTCCCAACATTCACTCCAATCTCTCGATGCACAGAACACCTCCG
TTCAATCATGGCCCCCATCGGAAATAAACCTACGCATAAAGGCAAGGCAG
TGCTGGCGGGTGGGCTCTCTGGTGCCTTTGAAATTTGCTGCACCTTCCCG
ACGGAGTATGTTAAGACGACGCAACAATTATCTTCCAAGTCCATGTCGGT
CAAGCAAGTCATCTCCAATACCATGGCCGAAAGCGGAGTCCTTGGGTTCT
ATCGCGGCCTCTCCTCCATGCTGTACTTCGCCGCCCCGAAGGCCGCTATT
CGGTTTAGTGCCTTCGAATTTTTCTCCAGTTGTTTGACGGATGCAGACGG
AGGGGATAAATTTGGTCTGGGCCAGGCGAAGGGCTTTTTGGCTGGTTTAG
GCGCGGGAACGATGGAGGCGATTTTTGTGACGACACCTCAGGAGACGATC
AAGATAAAGTTGATTCACGACCAGTTCCGCGGTACCAACAAGTACAACGG
CTTCTTCCATGGAGTGAAGACTATTGTTGCCGACGAAAAGATCTCTGGCG
TTTACCGTGGCCTGCTCCCCACCATAATGAAGGTGTCCACCGCCCAAGCC
ACACGCTTCGGCATCTTCACCGTCATCAAAGATTACGTCAAGCTCGACAC
CCCAATCAAAAGCGCTGCTGCCGGTGCCACGGCTGGTGGTATTTCTGTCC
TGGCCTTCCAGGGGATTGACGTTGTCAAGAGTCGGATGCAGGGATTGGAA
GCGGCCAAGTACACGAGCACGTTGGACTGTGTGGGGCAGATAATGAAGAA
CGAGGGCATCGCAGGGTTTTACAAGGGGGTGGGCCCGAGATTGACTCGAG
TGTGCTTGGAAGTGGGGATAACCATGAGCTTGTATGGGGAGATTGTGAAG
TTCTTGGACAGCATCTGGGACACCACGCCGAAGGTACCCATGCCGCACTA
GAGCTAGGAGGGAGGAAGGGGGGGAGGAAGGAAGGAAGATGGCGTCCTGC
GTGTATTTAGTGATTTTAAAGGGGGGAAGAGGTTTGTGCGAGGACGCGTG
GAAGGAGGGAGTGAGGGAGGGGGAAAGAGGTAATGGAGGGCGTAAGCCGA
CCACATTTTTGACGCTGATGATATAGGAGGTGCTGATGTTGTCCCTTGAC
GGCTGTCCTGTGTGCGTTAACGTGTGTGAGAGAGCGAGCGATGGGCCGGG
AGAGAAAGGGAGACTGGGCGTACCATAAATCTCACAGGAGGAAGTGGATA
CGAAATCATTGAGAAAGGGGGAGGGGGGTTAAAGCCGGAAGGTTAGAGAG
GAGAGGGGGGTCGCGGAGAGCAGAGGTGCATCATGGCGAGGTGTTGAGAT
CCATCTACCTATCGATTGAGCCTCCAATAAAAGTTCCATGCGTTTTGATT
GCCCCGCAGCAGTGTGTCTCG
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protein sequence of NO08G02900.2

>NO08G02900.2-protein ID=NO08G02900.2-protein|Name=NO08G02900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MHAPAHASPWPGALMKHRSIEARIRPLHNTRTSLPPFPTFTPISRCTEHL
RSIMAPIGNKPTHKGKAVLAGGLSGAFEICCTFPTEYVKTTQQLSSKSMS
VKQVISNTMAESGVLGFYRGLSSMLYFAAPKAAIRFSAFEFFSSCLTDAD
GGDKFGLGQAKGFLAGLGAGTMEAIFVTTPQETIKIKLIHDQFRGTNKYN
GFFHGVKTIVADEKISGVYRGLLPTIMKVSTAQATRFGIFTVIKDYVKLD
TPIKSAAAGATAGGISVLAFQGIDVVKSRMQGLEAAKYTSTLDCVGQIMK
NEGIAGFYKGVGPRLTRVCLEVGITMSLYGEIVKFLDSIWDTTPKVPMPH
*
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mRNA from alignment at chr8:812378..814861+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02900.2 ID=NO08G02900.2|Name=NO08G02900.2|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp|location=Sequence derived from alignment at chr8:812378..814861+ (Nannochloropsis oceanica)
CCAGATTCTTTCATTGCCCCTTTCAAAGACCTAACATCGGAAAGGGATTC
GACGAGATGCATTATCAGTTTGCATCAATGTCTCAGCAAAGGTACATCAT
GCGCCCGCTCGTGTCGTGAGCCCTCGGCCTCCACCAAAATTGGATCGAGG
ATCGGAGTCGCCGCTATCGTGCAAATTCCACGCACCCACATCACAGCGTA
CGCCACACATACCACCGCCTTGTTTTTCTTTTATATACACATCATTTACC
GGGACAACAGCGGAAGGAGGAGCAGCAGGTACAGTAGAGCAGGGTATCAA
TGTGCTAGCAGCACCCGCCCTTCTTATGATGACGTTGGCATGTCGAACCT
CGTCAGCCCGAAAGCTAGTACAAGGACCAAGCAATAGCACACCTGCCGGC
ATCCCTGTAGTCGTCGCATACATGCATTATTAAGCGCTGATTAATGAGAT
GCACGCACCTGCACATGCTTCACCGTGGCCTGGAGCGCTTATGAAGCACA
GAAGCATAGAAGCTCGCATTCGACCACTGCACAACACCCGCACTTCACTC
CCCCCTTTCCCAACATTCACTCCAATCTCTCGATGCACAGAACACCTCCG
TTCAATCATGGCCCCCATCGGAAATAAACCTACGCATAAAGGCAAGGCAG
TGCTGGCGGGTGGGCTCTCTGGTGCCTTTGAAATTTGCTGGTACGTGTAG
AGAGACCACTAGTGGGATGGGTAGGGTGTGTGTGCCCACCGTTGCGGCAA
GGCCTTCTTTCTCTAATGATGCTCCTTCCCCTCTTTACCAACAAAGCACC
TTCCCGACGGAGTATGTTAAGACGACGCAACAATTATCTTCCAAGTCCAT
GTCGGTCAAGCAAGTCATCTCCAATACCATGGCCGAAAGCGGAGTCCTTG
GGTTCTATCGCGGCCTCTCCTCCATGCTGTACTTCGCCGCCCCGAAGGCC
GCTATTCGGTTTAGTGCCTTCGAATTTTTCTCCAGTTGTTTGACGGATGC
AGACGGAGGGGATAAATTTGGTCTGGGCCAGGCGAAGGGCTTTTTGGCTG
GTTTAGGCGCGGGAACGATGGAGGCGATTTTTGTGACGACACCTCAGGAG
ACGATCAAGATAAAGTTGATTCACGACCAGGTTAGTCATTGTCCTACTCT
GTTCTAGATATGAGAGGAAAGTGTGATCAGTGTGAATATGTATATTCTGC
ACACTATGCTGAAAGTCACCTCGTCATAATTTTGCAGCTCTTCTTCCTGC
TGACTTTGACTTTGCCAATGTATACTTTTTCACGTTTCTACCTCACCCTC
TCTCTCGCTACCTCTGTAGTTCCGCGGTACCAACAAGTACAACGGCTTCT
TCCATGGAGTGAAGACTATTGTTGCCGACGAAAAGATCTCTGGCGTTTAC
CGTGGCCTGCTCCCCACCATAATGAAGGTAAATAAGGATAAAAAGTGGGG
GGGGGGGGGGGGGGAAGAAGGGAGGGAAGATAGGGGGTTGTGTCTACTCA
TACGTGTCCATAGACTTGGCTCCTACTATCTATCTTGGTCTGCAGTAGAT
ATGAGTGGACTTGTCGACTCTTTGTCTCATCGTCAATTTCCCTTCTCATC
ACGGATCCCTTCTTGCCTCCCCGCCTCCCTCCCCTTCCTTGTAAGGTGTC
CACCGCCCAAGCCACACGCTTCGGCATCTTCACCGTCATCAAAGATTACG
TCAAGCTCGACACCCCAATCAAAAGCGCTGCTGCCGGTGCCACGGCTGGT
GGTATTTCTGTCCTGGCCTTCCAGGGGATTGACGTTGTCAAGAGTCGGAT
GCAGGGATTGGAAGCGGCCAAGTACACGAGCACGTTGGACTGTGTGGGGC
AGATAATGAAGAACGAGGGCATCGCAGGGTTTTACAAGGGGGTGGGCCCG
AGATTGACTCGAGTGTGCTTGGAAGTGGGGATAACCATGAGCTTGTATGG
GGAGATTGTGAAGTTCTTGGACAGCATCTGGGACACCACGCCGAAGGTAC
CCATGCCGCACTAGAGCTAGGAGGGAGGAAGGGGGGGAGGAAGGAAGGAA
GATGGCGTCCTGCGTGTATTTAGTGATTTTAAAGGGGGGAAGAGGTTTGT
GCGAGGACGCGTGGAAGGAGGGAGTGAGGGAGGGGGAAAGAGGTAATGGA
GGGCGTAAGCCGACCACATTTTTGACGCTGATGATATAGGAGGTGCTGAT
GTTGTCCCTTGACGGCTGTCCTGTGTGCGTTAACGTGTGTGAGAGAGCGA
GCGATGGGCCGGGAGAGAAAGGGAGACTGGGCGTACCATAAATCTCACAG
GAGGAAGTGGATACGAAATCATTGAGAAAGGGGGAGGGGGGTTAAAGCCG
GAAGGTTAGAGAGGAGAGGGGGGTCGCGGAGAGCAGAGGTGCATCATGGC
GAGGTGTTGAGATCCATCTACCTATCGATTGAGCCTCCAATAAAAGTTCC
ATGCGTTTTGATTGCCCCGCAGCAGTGTGTCTCG
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Coding sequence (CDS) from alignment at chr8:812378..814861+

>NO08G02900.2 ID=NO08G02900.2|Name=NO08G02900.2|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr8:812378..814861+ (Nannochloropsis oceanica)
ATGCACGCACCTGCACATGCTTCACCGTGGCCTGGAGCGCTTATGAAGCA
CAGAAGCATAGAAGCTCGCATTCGACCACTGCACAACACCCGCACTTCAC
TCCCCCCTTTCCCAACATTCACTCCAATCTCTCGATGCACAGAACACCTC
CGTTCAATCATGGCCCCCATCGGAAATAAACCTACGCATAAAGGCAAGGC
AGTGCTGGCGGGTGGGCTCTCTGGTGCCTTTGAAATTTGCTGCACCTTCC
CGACGGAGTATGTTAAGACGACGCAACAATTATCTTCCAAGTCCATGTCG
GTCAAGCAAGTCATCTCCAATACCATGGCCGAAAGCGGAGTCCTTGGGTT
CTATCGCGGCCTCTCCTCCATGCTGTACTTCGCCGCCCCGAAGGCCGCTA
TTCGGTTTAGTGCCTTCGAATTTTTCTCCAGTTGTTTGACGGATGCAGAC
GGAGGGGATAAATTTGGTCTGGGCCAGGCGAAGGGCTTTTTGGCTGGTTT
AGGCGCGGGAACGATGGAGGCGATTTTTGTGACGACACCTCAGGAGACGA
TCAAGATAAAGTTGATTCACGACCAGTTCCGCGGTACCAACAAGTACAAC
GGCTTCTTCCATGGAGTGAAGACTATTGTTGCCGACGAAAAGATCTCTGG
CGTTTACCGTGGCCTGCTCCCCACCATAATGAAGGTGTCCACCGCCCAAG
CCACACGCTTCGGCATCTTCACCGTCATCAAAGATTACGTCAAGCTCGAC
ACCCCAATCAAAAGCGCTGCTGCCGGTGCCACGGCTGGTGGTATTTCTGT
CCTGGCCTTCCAGGGGATTGACGTTGTCAAGAGTCGGATGCAGGGATTGG
AAGCGGCCAAGTACACGAGCACGTTGGACTGTGTGGGGCAGATAATGAAG
AACGAGGGCATCGCAGGGTTTTACAAGGGGGTGGGCCCGAGATTGACTCG
AGTGTGCTTGGAAGTGGGGATAACCATGAGCTTGTATGGGGAGATTGTGA
AGTTCTTGGACAGCATCTGGGACACCACGCCGAAGGTACCCATGCCGCAC
TAG
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Synonyms
Publications