NO08G02880.1, NO08G02880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02880.1
Unique NameNO08G02880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1978
Alignment locationchr8:809060..811037 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:809060..811037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02880.1 vs.
Match: XP_005852514.1 (ubx domain-containing protein 7, partial [Nannochloropsis gaditana CCMP526]; EKU23317.1 ubx domain-containing protein 7, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 349.0 bits (894), Expect = 2.900e-92
Identity = 196/319 (61.44%), Postives = 232/319 (72.73%), Query Frame = 0
Query:    4 QDDGSRLRSFLAVIGDGIDPQVAQRFLDATNNDVEQAIELYLESGDGGGGAPLSSTSGDTSIADAAPDAAAISAAAQGKGDSRYRDEEEYEVDEDGNPVRKADQVKKQRLLAVSPLMGGGGGGGGGGGGGGGGVGYL--PVNPFRHFGAEARGAFGRGGNPWDVAGGGEGISKLFQPPLQLLFHGSFADARATAKEKKKWLLVNIQREDIFESHMLNRDVWADELVHAMILEGFIFWQMSAGLPEAMSYLARYHLEDDGSSRNNNNNNNQSAGHLPHIGVLDPRTQRLMWWHTGALPPHQLADKLTEITSTYSLDDHTS 321
            Q D S L  FL V GDG+DP VAQ FLDA + +VE+A+ELYL+SG G    P++  +   + A   P +  +             DEE+ ++DE+G PVRKADQVKKQRLL V     GG      GG GG  VG L  P+NPFRHFGAEARG+FGRGG+PW   GGG GISKLFQPPL ++FHG+FADARATA+E  KWLLVNIQREDIF SHMLNRDVWADELV A++ EGF+FWQMSAGLPEAMSY+ARYHL+   +   N+ + +   GHLPHIGVLDPRTQRL+W H GAL P QLA+KLTE+TSTYSL DHT+
Sbjct:    5 QPDQSGLDRFLMVAGDGVDPHVAQNFLDAGSGNVERALELYLDSG-GHMPEPVAGNAPRPAHAPHLPSSQQLHDV----------DEEDNDLDEEGRPVRKADQVKKQRLLGVGL---GGADRSEDGGEGGSEVGLLFHPLNPFRHFGAEARGSFGRGGDPWGRGGGG-GISKLFQPPLHMIFHGNFADARATAREGNKWLLVNIQREDIFASHMLNRDVWADELVQALVREGFVFWQMSAGLPEAMSYVARYHLD---AVEGNSKDCSGGDGHLPHIGVLDPRTQRLLWSHAGALSPAQLAEKLTEVTSTYSLTDHTT 305          
The following BLAST results are available for this feature:
BLAST of NO08G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852514.12.900e-9261.44ubx domain-containing protein 7, partial [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02880NO08G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02880.1NO08G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02880.1.cds1NO08G02880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02880.1 ID=NO08G02880.1|Name=NO08G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp
TCACGTGTTTATGCTCCGGCCTTCCACTAGTACAGGGTCACTTAAATCAA
CAAGTACACAAGCTGCAGCATCGACGACTGCTCCTTTCACATCCAGCGCC
CACAGTACCCTTGGCGTACACCACCCCCTCCCACTATGGCCGCCCAAGAC
GACGGCAGCCGTCTCCGGTCCTTCCTGGCTGTCATCGGGGACGGCATTGA
CCCCCAAGTTGCCCAACGCTTCCTTGATGCGACAAATAATGACGTGGAAC
AGGCCATCGAACTCTATCTAGAGAGCGGGGATGGTGGAGGCGGTGCTCCC
CTGTCTTCTACTAGCGGTGATACTTCTATTGCGGATGCTGCTCCTGACGC
CGCTGCAATCTCTGCGGCCGCTCAAGGAAAGGGAGATAGCAGGTATCGCG
ACGAGGAGGAATATGAGGTGGATGAGGATGGCAACCCTGTGCGGAAGGCG
GATCAAGTCAAAAAGCAGCGGCTTCTAGCTGTCAGCCCTTTGATGGGAGG
AGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGGCGGGGGAGGAGTGGGCT
ATCTCCCTGTCAACCCTTTTCGGCATTTTGGTGCGGAGGCAAGAGGCGCT
TTCGGTCGGGGTGGGAATCCATGGGATGTAGCGGGTGGAGGTGAGGGCAT
AAGCAAGCTGTTTCAACCTCCATTGCAATTGTTGTTTCATGGTAGTTTTG
CCGATGCCCGGGCCACGGCCAAGGAGAAAAAGAAATGGTTGTTGGTGAAC
ATTCAGAGAGAGGATATATTTGAGTCGCATATGCTCAACCGGGATGTGTG
GGCGGACGAGCTGGTTCATGCCATGATTCTAGAAGGTTTCATTTTTTGGC
AAATGAGTGCAGGGCTTCCGGAGGCTATGTCCTACCTTGCTCGGTATCAT
CTCGAGGACGACGGCAGCAGCCGCAACAACAACAACAACAACAATCAAAG
CGCGGGCCATCTACCTCATATAGGTGTGCTCGATCCTCGGACCCAACGGC
TGATGTGGTGGCATACTGGTGCCCTCCCTCCCCACCAGCTTGCAGATAAA
TTGACCGAAATTACGTCAACCTACTCCTTGGACGACCACACGTCCGTGCT
TCCTCCACCCCGTCCTCCCCCAGCACGTCATTCTACCCAGAGTGAGTATG
ATCGGTCGGAGGACGAACAGCTTGCATTGGCGTTGGCGGCATCTATGAAG
GATGCGGAGCCCTCGGAGGGAGGAGGAGGAAAGGAGGGAGGGAGGGCAGG
AGGACGAAATCATGAGATTGTCGAGTTGGATGATAGTGATGAGGACGAGA
ACGAGGGCGAGGATGACGGTGAGGATGATGACAAGGTGCTCTTCTCACCG
CCCGTGGAGAAGATGGGAGAAGGTGGGAATGAGGGAGGAATGGAAGGCAA
GGCTCCCCCTGTATATGATGTTCTGGACGACGACGAGGACGATTTTGTGG
ACACGACATCAACAACAGTAACACCAACAACAGGAACAACAGCAGCGACA
GCAACGACTGCATCAGTACCTTCCTTCCTCCCTTTTTCTCCTTACCTGTC
CTATGGTCTCGAGCCAGAGCCGGCGGTGGGAGGAGAAGGTGTGACACGGG
TGAGGTTTCGTTTACCACAAGGGAAAACTCTCACCCGCCGTTTCCTCGTC
GATAATCCCGTGGCTGCTCTGTATAAATATGCACACGAGGAGCTTGTGAA
AGAGAATGGGGAGATGGAAGGCATGGAAAGGAGGAAGGGAGGGCTTAGGA
AATTTGACTTAGTCACGATGTATCCGCCCAAGTTGTCCTTGGAGAAGGAG
ATGGGGGATGGGAAGACTTTGGGAGAGGCGAAGCTGCAAAATTCGTCATT
GGTGATGGTGTTGTTGCCTTGAGGGATGGAGGGACGTTTGGAGGGAGGTA
GTATAAGAGTGTGAAGGTAGGAGTGTGCAGGTAGGTACATATCAGTAGAA
GTGGAGGAGAAAGAAAGAAACGCTCTAC
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protein sequence of NO08G02880.1

>NO08G02880.1-protein ID=NO08G02880.1-protein|Name=NO08G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MAAQDDGSRLRSFLAVIGDGIDPQVAQRFLDATNNDVEQAIELYLESGDG
GGGAPLSSTSGDTSIADAAPDAAAISAAAQGKGDSRYRDEEEYEVDEDGN
PVRKADQVKKQRLLAVSPLMGGGGGGGGGGGGGGGGVGYLPVNPFRHFGA
EARGAFGRGGNPWDVAGGGEGISKLFQPPLQLLFHGSFADARATAKEKKK
WLLVNIQREDIFESHMLNRDVWADELVHAMILEGFIFWQMSAGLPEAMSY
LARYHLEDDGSSRNNNNNNNQSAGHLPHIGVLDPRTQRLMWWHTGALPPH
QLADKLTEITSTYSLDDHTSVLPPPRPPPARHSTQSEYDRSEDEQLALAL
AASMKDAEPSEGGGGKEGGRAGGRNHEIVELDDSDEDENEGEDDGEDDDK
VLFSPPVEKMGEGGNEGGMEGKAPPVYDVLDDDEDDFVDTTSTTVTPTTG
TTAATATTASVPSFLPFSPYLSYGLEPEPAVGGEGVTRVRFRLPQGKTLT
RRFLVDNPVAALYKYAHEELVKENGEMEGMERRKGGLRKFDLVTMYPPKL
SLEKEMGDGKTLGEAKLQNSSLVMVLLP*
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mRNA from alignment at chr8:809060..811037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02880.1 ID=NO08G02880.1|Name=NO08G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp|location=Sequence derived from alignment at chr8:809060..811037- (Nannochloropsis oceanica)
TCACGTGTTTATGCTCCGGCCTTCCACTAGTACAGGGTCACTTAAATCAA CAAGTACACAAGCTGCAGCATCGACGACTGCTCCTTTCACATCCAGCGCC CACAGTACCCTTGGCGTACACCACCCCCTCCCACTATGGCCGCCCAAGAC GACGGCAGCCGTCTCCGGTCCTTCCTGGCTGTCATCGGGGACGGCATTGA CCCCCAAGTTGCCCAACGCTTCCTTGATGCGACAAATAATGACGTGGAAC AGGCCATCGAACTCTATCTAGAGAGCGGGGATGGTGGAGGCGGTGCTCCC CTGTCTTCTACTAGCGGTGATACTTCTATTGCGGATGCTGCTCCTGACGC CGCTGCAATCTCTGCGGCCGCTCAAGGAAAGGGAGATAGCAGGTATCGCG ACGAGGAGGAATATGAGGTGGATGAGGATGGCAACCCTGTGCGGAAGGCG GATCAAGTCAAAAAGCAGCGGCTTCTAGCTGTCAGCCCTTTGATGGGAGG AGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGGCGGGGGAGGAGTGGGCT ATCTCCCTGTCAACCCTTTTCGGCATTTTGGTGCGGAGGCAAGAGGCGCT TTCGGTCGGGGTGGGAATCCATGGGATGTAGCGGGTGGAGGTGAGGGCAT AAGCAAGCTGTTTCAACCTCCATTGCAATTGTTGTTTCATGGTAGTTTTG CCGATGCCCGGGCCACGGCCAAGGAGAAAAAGAAATGGTTGTTGGTGAAC ATTCAGAGAGAGGATATATTTGAGTCGCATATGCTCAACCGGGATGTGTG GGCGGACGAGCTGGTTCATGCCATGATTCTAGAAGGTTTCATTTTTTGGC AAATGAGTGCAGGGCTTCCGGAGGCTATGTCCTACCTTGCTCGGTATCAT CTCGAGGACGACGGCAGCAGCCGCAACAACAACAACAACAACAATCAAAG CGCGGGCCATCTACCTCATATAGGTGTGCTCGATCCTCGGACCCAACGGC TGATGTGGTGGCATACTGGTGCCCTCCCTCCCCACCAGCTTGCAGATAAA TTGACCGAAATTACGTCAACCTACTCCTTGGACGACCACACGTCCGTGCT TCCTCCACCCCGTCCTCCCCCAGCACGTCATTCTACCCAGAGTGAGTATG ATCGGTCGGAGGACGAACAGCTTGCATTGGCGTTGGCGGCATCTATGAAG GATGCGGAGCCCTCGGAGGGAGGAGGAGGAAAGGAGGGAGGGAGGGCAGG AGGACGAAATCATGAGATTGTCGAGTTGGATGATAGTGATGAGGACGAGA ACGAGGGCGAGGATGACGGTGAGGATGATGACAAGGTGCTCTTCTCACCG CCCGTGGAGAAGATGGGAGAAGGTGGGAATGAGGGAGGAATGGAAGGCAA GGCTCCCCCTGTATATGATGTTCTGGACGACGACGAGGACGATTTTGTGG ACACGACATCAACAACAGTAACACCAACAACAGGAACAACAGCAGCGACA GCAACGACTGCATCAGTACCTTCCTTCCTCCCTTTTTCTCCTTACCTGTC CTATGGTCTCGAGCCAGAGCCGGCGGTGGGAGGAGAAGGTGTGACACGGG TGAGGTTTCGTTTACCACAAGGGAAAACTCTCACCCGCCGTTTCCTCGTC GATAATCCCGTGGCTGCTCTGTATAAATATGCACACGAGGAGCTTGTGAA AGAGAATGGGGAGATGGAAGGCATGGAAAGGAGGAAGGGAGGGCTTAGGA AATTTGACTTAGTCACGATGTATCCGCCCAAGTTGTCCTTGGAGAAGGAG ATGGGGGATGGGAAGACTTTGGGAGAGGCGAAGCTGCAAAATTCGTCATT GGTGATGGTGTTGTTGCCTTGAGGGATGGAGGGACGTTTGGAGGGAGGTA GTATAAGAGTGTGAAGGTAGGAGTGTGCAGGTAGGTACATATCAGTAGAA GTGGAGGAGAAAGAAAGAAACGCTCTAC
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Coding sequence (CDS) from alignment at chr8:809060..811037-

>NO08G02880.1 ID=NO08G02880.1|Name=NO08G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr8:809060..811037- (Nannochloropsis oceanica)
ATGGCCGCCCAAGACGACGGCAGCCGTCTCCGGTCCTTCCTGGCTGTCAT
CGGGGACGGCATTGACCCCCAAGTTGCCCAACGCTTCCTTGATGCGACAA
ATAATGACGTGGAACAGGCCATCGAACTCTATCTAGAGAGCGGGGATGGT
GGAGGCGGTGCTCCCCTGTCTTCTACTAGCGGTGATACTTCTATTGCGGA
TGCTGCTCCTGACGCCGCTGCAATCTCTGCGGCCGCTCAAGGAAAGGGAG
ATAGCAGGTATCGCGACGAGGAGGAATATGAGGTGGATGAGGATGGCAAC
CCTGTGCGGAAGGCGGATCAAGTCAAAAAGCAGCGGCTTCTAGCTGTCAG
CCCTTTGATGGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGGCG
GGGGAGGAGTGGGCTATCTCCCTGTCAACCCTTTTCGGCATTTTGGTGCG
GAGGCAAGAGGCGCTTTCGGTCGGGGTGGGAATCCATGGGATGTAGCGGG
TGGAGGTGAGGGCATAAGCAAGCTGTTTCAACCTCCATTGCAATTGTTGT
TTCATGGTAGTTTTGCCGATGCCCGGGCCACGGCCAAGGAGAAAAAGAAA
TGGTTGTTGGTGAACATTCAGAGAGAGGATATATTTGAGTCGCATATGCT
CAACCGGGATGTGTGGGCGGACGAGCTGGTTCATGCCATGATTCTAGAAG
GTTTCATTTTTTGGCAAATGAGTGCAGGGCTTCCGGAGGCTATGTCCTAC
CTTGCTCGGTATCATCTCGAGGACGACGGCAGCAGCCGCAACAACAACAA
CAACAACAATCAAAGCGCGGGCCATCTACCTCATATAGGTGTGCTCGATC
CTCGGACCCAACGGCTGATGTGGTGGCATACTGGTGCCCTCCCTCCCCAC
CAGCTTGCAGATAAATTGACCGAAATTACGTCAACCTACTCCTTGGACGA
CCACACGTCCGTGCTTCCTCCACCCCGTCCTCCCCCAGCACGTCATTCTA
CCCAGAGTGAGTATGATCGGTCGGAGGACGAACAGCTTGCATTGGCGTTG
GCGGCATCTATGAAGGATGCGGAGCCCTCGGAGGGAGGAGGAGGAAAGGA
GGGAGGGAGGGCAGGAGGACGAAATCATGAGATTGTCGAGTTGGATGATA
GTGATGAGGACGAGAACGAGGGCGAGGATGACGGTGAGGATGATGACAAG
GTGCTCTTCTCACCGCCCGTGGAGAAGATGGGAGAAGGTGGGAATGAGGG
AGGAATGGAAGGCAAGGCTCCCCCTGTATATGATGTTCTGGACGACGACG
AGGACGATTTTGTGGACACGACATCAACAACAGTAACACCAACAACAGGA
ACAACAGCAGCGACAGCAACGACTGCATCAGTACCTTCCTTCCTCCCTTT
TTCTCCTTACCTGTCCTATGGTCTCGAGCCAGAGCCGGCGGTGGGAGGAG
AAGGTGTGACACGGGTGAGGTTTCGTTTACCACAAGGGAAAACTCTCACC
CGCCGTTTCCTCGTCGATAATCCCGTGGCTGCTCTGTATAAATATGCACA
CGAGGAGCTTGTGAAAGAGAATGGGGAGATGGAAGGCATGGAAAGGAGGA
AGGGAGGGCTTAGGAAATTTGACTTAGTCACGATGTATCCGCCCAAGTTG
TCCTTGGAGAAGGAGATGGGGGATGGGAAGACTTTGGGAGAGGCGAAGCT
GCAAAATTCGTCATTGGTGATGGTGTTGTTGCCTTGA
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Synonyms
Publications