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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:809060..811037 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02880.1 vs.
Match: XP_005852514.1 (ubx domain-containing protein 7, partial [Nannochloropsis gaditana CCMP526]; EKU23317.1 ubx domain-containing protein 7, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 349.0 bits (894), Expect = 2.900e-92 Identity = 196/319 (61.44%), Postives = 232/319 (72.73%), Query Frame = 0
Query: 4 QDDGSRLRSFLAVIGDGIDPQVAQRFLDATNNDVEQAIELYLESGDGGGGAPLSSTSGDTSIADAAPDAAAISAAAQGKGDSRYRDEEEYEVDEDGNPVRKADQVKKQRLLAVSPLMGGGGGGGGGGGGGGGGVGYL--PVNPFRHFGAEARGAFGRGGNPWDVAGGGEGISKLFQPPLQLLFHGSFADARATAKEKKKWLLVNIQREDIFESHMLNRDVWADELVHAMILEGFIFWQMSAGLPEAMSYLARYHLEDDGSSRNNNNNNNQSAGHLPHIGVLDPRTQRLMWWHTGALPPHQLADKLTEITSTYSLDDHTS 321
Q D S L FL V GDG+DP VAQ FLDA + +VE+A+ELYL+SG G P++ + + A P + + DEE+ ++DE+G PVRKADQVKKQRLL V GG GG GG VG L P+NPFRHFGAEARG+FGRGG+PW GGG GISKLFQPPL ++FHG+FADARATA+E KWLLVNIQREDIF SHMLNRDVWADELV A++ EGF+FWQMSAGLPEAMSY+ARYHL+ + N+ + + GHLPHIGVLDPRTQRL+W H GAL P QLA+KLTE+TSTYSL DHT+
Sbjct: 5 QPDQSGLDRFLMVAGDGVDPHVAQNFLDAGSGNVERALELYLDSG-GHMPEPVAGNAPRPAHAPHLPSSQQLHDV----------DEEDNDLDEEGRPVRKADQVKKQRLLGVGL---GGADRSEDGGEGGSEVGLLFHPLNPFRHFGAEARGSFGRGGDPWGRGGGG-GISKLFQPPLHMIFHGNFADARATAREGNKWLLVNIQREDIFASHMLNRDVWADELVQALVREGFVFWQMSAGLPEAMSYVARYHLD---AVEGNSKDCSGGDGHLPHIGVLDPRTQRLLWSHAGALSPAQLAEKLTEVTSTYSLTDHTT 305
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02880.1 ID=NO08G02880.1|Name=NO08G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp TCACGTGTTTATGCTCCGGCCTTCCACTAGTACAGGGTCACTTAAATCAA CAAGTACACAAGCTGCAGCATCGACGACTGCTCCTTTCACATCCAGCGCC CACAGTACCCTTGGCGTACACCACCCCCTCCCACTATGGCCGCCCAAGAC GACGGCAGCCGTCTCCGGTCCTTCCTGGCTGTCATCGGGGACGGCATTGA CCCCCAAGTTGCCCAACGCTTCCTTGATGCGACAAATAATGACGTGGAAC AGGCCATCGAACTCTATCTAGAGAGCGGGGATGGTGGAGGCGGTGCTCCC CTGTCTTCTACTAGCGGTGATACTTCTATTGCGGATGCTGCTCCTGACGC CGCTGCAATCTCTGCGGCCGCTCAAGGAAAGGGAGATAGCAGGTATCGCG ACGAGGAGGAATATGAGGTGGATGAGGATGGCAACCCTGTGCGGAAGGCG GATCAAGTCAAAAAGCAGCGGCTTCTAGCTGTCAGCCCTTTGATGGGAGG AGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGGCGGGGGAGGAGTGGGCT ATCTCCCTGTCAACCCTTTTCGGCATTTTGGTGCGGAGGCAAGAGGCGCT TTCGGTCGGGGTGGGAATCCATGGGATGTAGCGGGTGGAGGTGAGGGCAT AAGCAAGCTGTTTCAACCTCCATTGCAATTGTTGTTTCATGGTAGTTTTG CCGATGCCCGGGCCACGGCCAAGGAGAAAAAGAAATGGTTGTTGGTGAAC ATTCAGAGAGAGGATATATTTGAGTCGCATATGCTCAACCGGGATGTGTG GGCGGACGAGCTGGTTCATGCCATGATTCTAGAAGGTTTCATTTTTTGGC AAATGAGTGCAGGGCTTCCGGAGGCTATGTCCTACCTTGCTCGGTATCAT CTCGAGGACGACGGCAGCAGCCGCAACAACAACAACAACAACAATCAAAG CGCGGGCCATCTACCTCATATAGGTGTGCTCGATCCTCGGACCCAACGGC TGATGTGGTGGCATACTGGTGCCCTCCCTCCCCACCAGCTTGCAGATAAA TTGACCGAAATTACGTCAACCTACTCCTTGGACGACCACACGTCCGTGCT TCCTCCACCCCGTCCTCCCCCAGCACGTCATTCTACCCAGAGTGAGTATG ATCGGTCGGAGGACGAACAGCTTGCATTGGCGTTGGCGGCATCTATGAAG GATGCGGAGCCCTCGGAGGGAGGAGGAGGAAAGGAGGGAGGGAGGGCAGG AGGACGAAATCATGAGATTGTCGAGTTGGATGATAGTGATGAGGACGAGA ACGAGGGCGAGGATGACGGTGAGGATGATGACAAGGTGCTCTTCTCACCG CCCGTGGAGAAGATGGGAGAAGGTGGGAATGAGGGAGGAATGGAAGGCAA GGCTCCCCCTGTATATGATGTTCTGGACGACGACGAGGACGATTTTGTGG ACACGACATCAACAACAGTAACACCAACAACAGGAACAACAGCAGCGACA GCAACGACTGCATCAGTACCTTCCTTCCTCCCTTTTTCTCCTTACCTGTC CTATGGTCTCGAGCCAGAGCCGGCGGTGGGAGGAGAAGGTGTGACACGGG TGAGGTTTCGTTTACCACAAGGGAAAACTCTCACCCGCCGTTTCCTCGTC GATAATCCCGTGGCTGCTCTGTATAAATATGCACACGAGGAGCTTGTGAA AGAGAATGGGGAGATGGAAGGCATGGAAAGGAGGAAGGGAGGGCTTAGGA AATTTGACTTAGTCACGATGTATCCGCCCAAGTTGTCCTTGGAGAAGGAG ATGGGGGATGGGAAGACTTTGGGAGAGGCGAAGCTGCAAAATTCGTCATT GGTGATGGTGTTGTTGCCTTGAGGGATGGAGGGACGTTTGGAGGGAGGTA GTATAAGAGTGTGAAGGTAGGAGTGTGCAGGTAGGTACATATCAGTAGAA GTGGAGGAGAAAGAAAGAAACGCTCTAC back to topprotein sequence of NO08G02880.1 >NO08G02880.1-protein ID=NO08G02880.1-protein|Name=NO08G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp MAAQDDGSRLRSFLAVIGDGIDPQVAQRFLDATNNDVEQAIELYLESGDG GGGAPLSSTSGDTSIADAAPDAAAISAAAQGKGDSRYRDEEEYEVDEDGN PVRKADQVKKQRLLAVSPLMGGGGGGGGGGGGGGGGVGYLPVNPFRHFGA EARGAFGRGGNPWDVAGGGEGISKLFQPPLQLLFHGSFADARATAKEKKK WLLVNIQREDIFESHMLNRDVWADELVHAMILEGFIFWQMSAGLPEAMSY LARYHLEDDGSSRNNNNNNNQSAGHLPHIGVLDPRTQRLMWWHTGALPPH QLADKLTEITSTYSLDDHTSVLPPPRPPPARHSTQSEYDRSEDEQLALAL AASMKDAEPSEGGGGKEGGRAGGRNHEIVELDDSDEDENEGEDDGEDDDK VLFSPPVEKMGEGGNEGGMEGKAPPVYDVLDDDEDDFVDTTSTTVTPTTG TTAATATTASVPSFLPFSPYLSYGLEPEPAVGGEGVTRVRFRLPQGKTLT RRFLVDNPVAALYKYAHEELVKENGEMEGMERRKGGLRKFDLVTMYPPKL SLEKEMGDGKTLGEAKLQNSSLVMVLLP* back to topmRNA from alignment at chr8:809060..811037- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02880.1 ID=NO08G02880.1|Name=NO08G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp|location=Sequence derived from alignment at chr8:809060..811037- (Nannochloropsis oceanica) TCACGTGTTTATGCTCCGGCCTTCCACTAGTACAGGGTCACTTAAATCAA
CAAGTACACAAGCTGCAGCATCGACGACTGCTCCTTTCACATCCAGCGCC
CACAGTACCCTTGGCGTACACCACCCCCTCCCACTATGGCCGCCCAAGAC
GACGGCAGCCGTCTCCGGTCCTTCCTGGCTGTCATCGGGGACGGCATTGA
CCCCCAAGTTGCCCAACGCTTCCTTGATGCGACAAATAATGACGTGGAAC
AGGCCATCGAACTCTATCTAGAGAGCGGGGATGGTGGAGGCGGTGCTCCC
CTGTCTTCTACTAGCGGTGATACTTCTATTGCGGATGCTGCTCCTGACGC
CGCTGCAATCTCTGCGGCCGCTCAAGGAAAGGGAGATAGCAGGTATCGCG
ACGAGGAGGAATATGAGGTGGATGAGGATGGCAACCCTGTGCGGAAGGCG
GATCAAGTCAAAAAGCAGCGGCTTCTAGCTGTCAGCCCTTTGATGGGAGG
AGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGGCGGGGGAGGAGTGGGCT
ATCTCCCTGTCAACCCTTTTCGGCATTTTGGTGCGGAGGCAAGAGGCGCT
TTCGGTCGGGGTGGGAATCCATGGGATGTAGCGGGTGGAGGTGAGGGCAT
AAGCAAGCTGTTTCAACCTCCATTGCAATTGTTGTTTCATGGTAGTTTTG
CCGATGCCCGGGCCACGGCCAAGGAGAAAAAGAAATGGTTGTTGGTGAAC
ATTCAGAGAGAGGATATATTTGAGTCGCATATGCTCAACCGGGATGTGTG
GGCGGACGAGCTGGTTCATGCCATGATTCTAGAAGGTTTCATTTTTTGGC
AAATGAGTGCAGGGCTTCCGGAGGCTATGTCCTACCTTGCTCGGTATCAT
CTCGAGGACGACGGCAGCAGCCGCAACAACAACAACAACAACAATCAAAG
CGCGGGCCATCTACCTCATATAGGTGTGCTCGATCCTCGGACCCAACGGC
TGATGTGGTGGCATACTGGTGCCCTCCCTCCCCACCAGCTTGCAGATAAA
TTGACCGAAATTACGTCAACCTACTCCTTGGACGACCACACGTCCGTGCT
TCCTCCACCCCGTCCTCCCCCAGCACGTCATTCTACCCAGAGTGAGTATG
ATCGGTCGGAGGACGAACAGCTTGCATTGGCGTTGGCGGCATCTATGAAG
GATGCGGAGCCCTCGGAGGGAGGAGGAGGAAAGGAGGGAGGGAGGGCAGG
AGGACGAAATCATGAGATTGTCGAGTTGGATGATAGTGATGAGGACGAGA
ACGAGGGCGAGGATGACGGTGAGGATGATGACAAGGTGCTCTTCTCACCG
CCCGTGGAGAAGATGGGAGAAGGTGGGAATGAGGGAGGAATGGAAGGCAA
GGCTCCCCCTGTATATGATGTTCTGGACGACGACGAGGACGATTTTGTGG
ACACGACATCAACAACAGTAACACCAACAACAGGAACAACAGCAGCGACA
GCAACGACTGCATCAGTACCTTCCTTCCTCCCTTTTTCTCCTTACCTGTC
CTATGGTCTCGAGCCAGAGCCGGCGGTGGGAGGAGAAGGTGTGACACGGG
TGAGGTTTCGTTTACCACAAGGGAAAACTCTCACCCGCCGTTTCCTCGTC
GATAATCCCGTGGCTGCTCTGTATAAATATGCACACGAGGAGCTTGTGAA
AGAGAATGGGGAGATGGAAGGCATGGAAAGGAGGAAGGGAGGGCTTAGGA
AATTTGACTTAGTCACGATGTATCCGCCCAAGTTGTCCTTGGAGAAGGAG
ATGGGGGATGGGAAGACTTTGGGAGAGGCGAAGCTGCAAAATTCGTCATT
GGTGATGGTGTTGTTGCCTTGAGGGATGGAGGGACGTTTGGAGGGAGGTA
GTATAAGAGTGTGAAGGTAGGAGTGTGCAGGTAGGTACATATCAGTAGAA
GTGGAGGAGAAAGAAAGAAACGCTCTAC back to topCoding sequence (CDS) from alignment at chr8:809060..811037- >NO08G02880.1 ID=NO08G02880.1|Name=NO08G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr8:809060..811037- (Nannochloropsis oceanica) ATGGCCGCCCAAGACGACGGCAGCCGTCTCCGGTCCTTCCTGGCTGTCAT CGGGGACGGCATTGACCCCCAAGTTGCCCAACGCTTCCTTGATGCGACAA ATAATGACGTGGAACAGGCCATCGAACTCTATCTAGAGAGCGGGGATGGT GGAGGCGGTGCTCCCCTGTCTTCTACTAGCGGTGATACTTCTATTGCGGA TGCTGCTCCTGACGCCGCTGCAATCTCTGCGGCCGCTCAAGGAAAGGGAG ATAGCAGGTATCGCGACGAGGAGGAATATGAGGTGGATGAGGATGGCAAC CCTGTGCGGAAGGCGGATCAAGTCAAAAAGCAGCGGCTTCTAGCTGTCAG CCCTTTGATGGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGGCG GGGGAGGAGTGGGCTATCTCCCTGTCAACCCTTTTCGGCATTTTGGTGCG GAGGCAAGAGGCGCTTTCGGTCGGGGTGGGAATCCATGGGATGTAGCGGG TGGAGGTGAGGGCATAAGCAAGCTGTTTCAACCTCCATTGCAATTGTTGT TTCATGGTAGTTTTGCCGATGCCCGGGCCACGGCCAAGGAGAAAAAGAAA TGGTTGTTGGTGAACATTCAGAGAGAGGATATATTTGAGTCGCATATGCT CAACCGGGATGTGTGGGCGGACGAGCTGGTTCATGCCATGATTCTAGAAG GTTTCATTTTTTGGCAAATGAGTGCAGGGCTTCCGGAGGCTATGTCCTAC CTTGCTCGGTATCATCTCGAGGACGACGGCAGCAGCCGCAACAACAACAA CAACAACAATCAAAGCGCGGGCCATCTACCTCATATAGGTGTGCTCGATC CTCGGACCCAACGGCTGATGTGGTGGCATACTGGTGCCCTCCCTCCCCAC CAGCTTGCAGATAAATTGACCGAAATTACGTCAACCTACTCCTTGGACGA CCACACGTCCGTGCTTCCTCCACCCCGTCCTCCCCCAGCACGTCATTCTA CCCAGAGTGAGTATGATCGGTCGGAGGACGAACAGCTTGCATTGGCGTTG GCGGCATCTATGAAGGATGCGGAGCCCTCGGAGGGAGGAGGAGGAAAGGA GGGAGGGAGGGCAGGAGGACGAAATCATGAGATTGTCGAGTTGGATGATA GTGATGAGGACGAGAACGAGGGCGAGGATGACGGTGAGGATGATGACAAG GTGCTCTTCTCACCGCCCGTGGAGAAGATGGGAGAAGGTGGGAATGAGGG AGGAATGGAAGGCAAGGCTCCCCCTGTATATGATGTTCTGGACGACGACG AGGACGATTTTGTGGACACGACATCAACAACAGTAACACCAACAACAGGA ACAACAGCAGCGACAGCAACGACTGCATCAGTACCTTCCTTCCTCCCTTT TTCTCCTTACCTGTCCTATGGTCTCGAGCCAGAGCCGGCGGTGGGAGGAG AAGGTGTGACACGGGTGAGGTTTCGTTTACCACAAGGGAAAACTCTCACC CGCCGTTTCCTCGTCGATAATCCCGTGGCTGCTCTGTATAAATATGCACA CGAGGAGCTTGTGAAAGAGAATGGGGAGATGGAAGGCATGGAAAGGAGGA AGGGAGGGCTTAGGAAATTTGACTTAGTCACGATGTATCCGCCCAAGTTG TCCTTGGAGAAGGAGATGGGGGATGGGAAGACTTTGGGAGAGGCGAAGCT GCAAAATTCGTCATTGGTGATGGTGTTGTTGCCTTGA back to top
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