NO08G02850.1, NO08G02850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02850.1
Unique NameNO08G02850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr8:797836..798993 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:797836..798993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02850.1 vs.
Match: EWM26647.1 (Glycosyl hydrolase family 43, five-bladed beta-propellor domain protein [Nannochloropsis gaditana])

HSP 1 Score: 628.2 bits (1619), Expect = 1.600e-176
Identity = 293/373 (78.55%), Postives = 324/373 (86.86%), Query Frame = 0
Query:   17 LLQHRQINAFPFGGGLNVGKILGPGTAGAWDDYKVSGPIVRQAPAGTWNMWYYGRSKAFNQTADLINLPSGHIGLAKSKDGLRDFARVKGLLLDGAVFGPSSSNS----FDSLHVGIGDVQWDAQLKKWVMYYFGGDGEYGPTPYGQARGIYMKIGKAESSDGVSWTRTPGVLLDKGAPGEFDALFVGWPQVVDLEKDSVLPGAKLGMFYHTFNTATFGFEIGLATSADSKGEKWTKRGPLQLPRGPPGTLRDLGHATRCVISDPVRRKKLLMFAECANTQNSNCIAVYGSDDGMHWEDMHPDGKPVFVGAGKGTGRWDAQALGCPSVSVRDGCFYMYYVGFAESTSEGAALGCIGLAISEGMDFTKWKRMGE 386
            LL  + I+AFP G   +VGKILGPG  GAWDDYKVSGP+VRQ+  G+WNMWYYGRSK FN+TA+LINLPSGHIGL++SKDGL DFARVKG LLDGAVFGPSS+ +    FDSLHVGIGD+ W+   ++WVMYYFGGDGEYGPTPYGQARGIYMKIGKAES DGV W+R PGVLLDKGA G+FDALFVGWPQVVD  K  V+PG K GMFYHTFN  TFGFEIGLATS+D+ G KW KRGP+ LPRG PG+  DLGHATRCVI DP  RKKLLMFAECANTQNSNCIAVYGS+DG+ WE+MHP G PVFVGAGKG+GRWDAQALGCPSV+VRDGCFYMYYVGF ES+SEGAALGCIGLA+S+GMDFTKWKRMGE
Sbjct:   40 LLFIQTIHAFPVGRP-DVGKILGPGVGGAWDDYKVSGPVVRQSRDGSWNMWYYGRSKEFNKTANLINLPSGHIGLSQSKDGLTDFARVKGPLLDGAVFGPSSNEAGGKAFDSLHVGIGDIVWEEARQQWVMYYFGGDGEYGPTPYGQARGIYMKIGKAESPDGVQWSRAPGVLLDKGAAGDFDALFVGWPQVVDFGKADVIPGMKQGMFYHTFNAVTFGFEIGLATSSDTTGNKWIKRGPIHLPRGAPGSYCDLGHATRCVIPDPANRKKLLMFAECANTQNSNCIAVYGSNDGLLWENMHPAG-PVFVGAGKGSGRWDAQALGCPSVTVRDGCFYMYYVGFTESSSEGAALGCIGLAVSDGMDFTKWKRMGE 410          
The following BLAST results are available for this feature:
BLAST of NO08G02850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26647.11.600e-17678.55Glycosyl hydrolase family 43, five-bladed beta-pro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02850NO08G02850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02850.1NO08G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02850.1.cds1NO08G02850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02850.1 ID=NO08G02850.1|Name=NO08G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGCAAAGCCCACCCTCGCTTCTCCTCCTCCCTCTCCTCCTTATCCCTCT
CCTCCAACACCGCCAGATCAACGCCTTCCCCTTTGGCGGTGGACTGAACG
TGGGCAAGATTCTGGGACCCGGCACAGCTGGAGCATGGGATGACTACAAG
GTGTCGGGTCCCATTGTGCGGCAAGCGCCGGCCGGTACCTGGAATATGTG
GTACTATGGCCGATCGAAAGCCTTCAACCAAACCGCCGACCTGATCAACC
TCCCCTCGGGACACATTGGCTTGGCGAAATCCAAGGATGGCTTGCGTGAT
TTCGCGCGGGTCAAAGGTCTCCTGTTAGATGGAGCTGTATTTGGTCCTAG
CAGCAGCAATAGCTTCGATTCTCTGCACGTAGGCATCGGAGACGTCCAAT
GGGACGCGCAGTTGAAGAAATGGGTCATGTACTACTTCGGTGGCGACGGC
GAGTATGGCCCTACTCCCTACGGACAAGCCCGAGGGATCTACATGAAAAT
CGGTAAGGCCGAAAGCTCCGACGGTGTGAGCTGGACACGGACCCCCGGTG
TGCTCCTTGATAAAGGCGCGCCTGGTGAGTTCGATGCCCTCTTCGTCGGT
TGGCCTCAAGTCGTGGATCTGGAGAAAGACAGTGTCCTACCGGGTGCAAA
GCTCGGTATGTTTTATCATACCTTTAATACAGCAACCTTCGGATTTGAAA
TCGGGCTTGCCACGTCCGCCGACTCCAAGGGTGAGAAATGGACTAAGCGT
GGCCCTCTTCAATTACCCCGAGGGCCTCCCGGCACGCTACGCGATTTGGG
ACATGCCACCCGCTGTGTTATTTCTGACCCGGTTAGGAGAAAGAAATTAC
TGATGTTTGCGGAGTGTGCGAATACGCAGAACAGTAATTGTATTGCTGTG
TATGGTTCGGATGATGGTATGCATTGGGAAGACATGCACCCAGATGGCAA
GCCTGTCTTTGTCGGGGCTGGGAAAGGGACAGGGAGGTGGGATGCTCAGG
CGTTGGGTTGTCCGAGTGTAAGTGTGAGAGATGGATGTTTTTATATGTAT
TATGTGGGCTTTGCTGAGAGTACTTCGGAGGGTGCAGCGCTTGGGTGCAT
TGGCTTGGCGATCAGTGAGGGGATGGACTTTACAAAGTGGAAGAGGATGG
GAGAGTAG
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protein sequence of NO08G02850.1

>NO08G02850.1-protein ID=NO08G02850.1-protein|Name=NO08G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MQSPPSLLLLPLLLIPLLQHRQINAFPFGGGLNVGKILGPGTAGAWDDYK
VSGPIVRQAPAGTWNMWYYGRSKAFNQTADLINLPSGHIGLAKSKDGLRD
FARVKGLLLDGAVFGPSSSNSFDSLHVGIGDVQWDAQLKKWVMYYFGGDG
EYGPTPYGQARGIYMKIGKAESSDGVSWTRTPGVLLDKGAPGEFDALFVG
WPQVVDLEKDSVLPGAKLGMFYHTFNTATFGFEIGLATSADSKGEKWTKR
GPLQLPRGPPGTLRDLGHATRCVISDPVRRKKLLMFAECANTQNSNCIAV
YGSDDGMHWEDMHPDGKPVFVGAGKGTGRWDAQALGCPSVSVRDGCFYMY
YVGFAESTSEGAALGCIGLAISEGMDFTKWKRMGE*
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mRNA from alignment at chr8:797836..798993-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02850.1 ID=NO08G02850.1|Name=NO08G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp|location=Sequence derived from alignment at chr8:797836..798993- (Nannochloropsis oceanica)
ATGCAAAGCCCACCCTCGCTTCTCCTCCTCCCTCTCCTCCTTATCCCTCT CCTCCAACACCGCCAGATCAACGCCTTCCCCTTTGGCGGTGGACTGAACG TGGGCAAGATTCTGGGACCCGGCACAGCTGGAGCATGGGATGACTACAAG GTGTCGGGTCCCATTGTGCGGCAAGCGCCGGCCGGTACCTGGAATATGTG GTACTATGGCCGATCGAAAGCCTTCAACCAAACCGCCGACCTGATCAACC TCCCCTCGGGACACATTGGCTTGGCGAAATCCAAGGATGGCTTGCGTGAT TTCGCGCGGGTCAAAGGTCTCCTGTTAGATGGAGCTGTATTTGGTCCTAG CAGCAGCAATAGCTTCGATTCTCTGCACGTAGGCATCGGAGACGTCCAAT GGGACGCGCAGTTGAAGAAATGGGTCATGTACTACTTCGGTGGCGACGGC GAGTATGGCCCTACTCCCTACGGACAAGCCCGAGGGATCTACATGAAAAT CGGTAAGGCCGAAAGCTCCGACGGTGTGAGCTGGACACGGACCCCCGGTG TGCTCCTTGATAAAGGCGCGCCTGGTGAGTTCGATGCCCTCTTCGTCGGT TGGCCTCAAGTCGTGGATCTGGAGAAAGACAGTGTCCTACCGGGTGCAAA GCTCGGTATGTTTTATCATACCTTTAATACAGCAACCTTCGGATTTGAAA TCGGGCTTGCCACGTCCGCCGACTCCAAGGGTGAGAAATGGACTAAGCGT GGCCCTCTTCAATTACCCCGAGGGCCTCCCGGCACGCTACGCGATTTGGG ACATGCCACCCGCTGTGTTATTTCTGACCCGGTTAGGAGAAAGAAATTAC TGATGTTTGCGGAGTGTGCGAATACGCAGAACAGTAATTGTATTGCTGTG TATGGTTCGGATGATGGTATGCATTGGGAAGACATGCACCCAGATGGCAA GCCTGTCTTTGTCGGGGCTGGGAAAGGGACAGGGAGGTGGGATGCTCAGG CGTTGGGTTGTCCGAGTGTAAGTGTGAGAGATGGATGTTTTTATATGTAT TATGTGGGCTTTGCTGAGAGTACTTCGGAGGGTGCAGCGCTTGGGTGCAT TGGCTTGGCGATCAGTGAGGGGATGGACTTTACAAAGTGGAAGAGGATGG GAGAGTAG
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Coding sequence (CDS) from alignment at chr8:797836..798993-

>NO08G02850.1 ID=NO08G02850.1|Name=NO08G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr8:797836..798993- (Nannochloropsis oceanica)
ATGCAAAGCCCACCCTCGCTTCTCCTCCTCCCTCTCCTCCTTATCCCTCT
CCTCCAACACCGCCAGATCAACGCCTTCCCCTTTGGCGGTGGACTGAACG
TGGGCAAGATTCTGGGACCCGGCACAGCTGGAGCATGGGATGACTACAAG
GTGTCGGGTCCCATTGTGCGGCAAGCGCCGGCCGGTACCTGGAATATGTG
GTACTATGGCCGATCGAAAGCCTTCAACCAAACCGCCGACCTGATCAACC
TCCCCTCGGGACACATTGGCTTGGCGAAATCCAAGGATGGCTTGCGTGAT
TTCGCGCGGGTCAAAGGTCTCCTGTTAGATGGAGCTGTATTTGGTCCTAG
CAGCAGCAATAGCTTCGATTCTCTGCACGTAGGCATCGGAGACGTCCAAT
GGGACGCGCAGTTGAAGAAATGGGTCATGTACTACTTCGGTGGCGACGGC
GAGTATGGCCCTACTCCCTACGGACAAGCCCGAGGGATCTACATGAAAAT
CGGTAAGGCCGAAAGCTCCGACGGTGTGAGCTGGACACGGACCCCCGGTG
TGCTCCTTGATAAAGGCGCGCCTGGTGAGTTCGATGCCCTCTTCGTCGGT
TGGCCTCAAGTCGTGGATCTGGAGAAAGACAGTGTCCTACCGGGTGCAAA
GCTCGGTATGTTTTATCATACCTTTAATACAGCAACCTTCGGATTTGAAA
TCGGGCTTGCCACGTCCGCCGACTCCAAGGGTGAGAAATGGACTAAGCGT
GGCCCTCTTCAATTACCCCGAGGGCCTCCCGGCACGCTACGCGATTTGGG
ACATGCCACCCGCTGTGTTATTTCTGACCCGGTTAGGAGAAAGAAATTAC
TGATGTTTGCGGAGTGTGCGAATACGCAGAACAGTAATTGTATTGCTGTG
TATGGTTCGGATGATGGTATGCATTGGGAAGACATGCACCCAGATGGCAA
GCCTGTCTTTGTCGGGGCTGGGAAAGGGACAGGGAGGTGGGATGCTCAGG
CGTTGGGTTGTCCGAGTGTAAGTGTGAGAGATGGATGTTTTTATATGTAT
TATGTGGGCTTTGCTGAGAGTACTTCGGAGGGTGCAGCGCTTGGGTGCAT
TGGCTTGGCGATCAGTGAGGGGATGGACTTTACAAAGTGGAAGAGGATGG
GAGAGTAG
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Synonyms
Publications