NO08G02850.1, NO08G02850.1 (mRNA) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO08G02850.1 vs.
Match: EWM26647.1 (Glycosyl hydrolase family 43, five-bladed beta-propellor domain protein [Nannochloropsis gaditana]) HSP 1 Score: 628.2 bits (1619), Expect = 1.600e-176 Identity = 293/373 (78.55%), Postives = 324/373 (86.86%), Query Frame = 0 Query: 17 LLQHRQINAFPFGGGLNVGKILGPGTAGAWDDYKVSGPIVRQAPAGTWNMWYYGRSKAFNQTADLINLPSGHIGLAKSKDGLRDFARVKGLLLDGAVFGPSSSNS----FDSLHVGIGDVQWDAQLKKWVMYYFGGDGEYGPTPYGQARGIYMKIGKAESSDGVSWTRTPGVLLDKGAPGEFDALFVGWPQVVDLEKDSVLPGAKLGMFYHTFNTATFGFEIGLATSADSKGEKWTKRGPLQLPRGPPGTLRDLGHATRCVISDPVRRKKLLMFAECANTQNSNCIAVYGSDDGMHWEDMHPDGKPVFVGAGKGTGRWDAQALGCPSVSVRDGCFYMYYVGFAESTSEGAALGCIGLAISEGMDFTKWKRMGE 386 LL + I+AFP G +VGKILGPG GAWDDYKVSGP+VRQ+ G+WNMWYYGRSK FN+TA+LINLPSGHIGL++SKDGL DFARVKG LLDGAVFGPSS+ + FDSLHVGIGD+ W+ ++WVMYYFGGDGEYGPTPYGQARGIYMKIGKAES DGV W+R PGVLLDKGA G+FDALFVGWPQVVD K V+PG K GMFYHTFN TFGFEIGLATS+D+ G KW KRGP+ LPRG PG+ DLGHATRCVI DP RKKLLMFAECANTQNSNCIAVYGS+DG+ WE+MHP G PVFVGAGKG+GRWDAQALGCPSV+VRDGCFYMYYVGF ES+SEGAALGCIGLA+S+GMDFTKWKRMGE Sbjct: 40 LLFIQTIHAFPVGRP-DVGKILGPGVGGAWDDYKVSGPVVRQSRDGSWNMWYYGRSKEFNKTANLINLPSGHIGLSQSKDGLTDFARVKGPLLDGAVFGPSSNEAGGKAFDSLHVGIGDIVWEEARQQWVMYYFGGDGEYGPTPYGQARGIYMKIGKAESPDGVQWSRAPGVLLDKGAAGDFDALFVGWPQVVDFGKADVIPGMKQGMFYHTFNAVTFGFEIGLATSSDTTGNKWIKRGPIHLPRGAPGSYCDLGHATRCVIPDPANRKKLLMFAECANTQNSNCIAVYGSNDGLLWENMHPAG-PVFVGAGKGSGRWDAQALGCPSVTVRDGCFYMYYVGFTESSSEGAALGCIGLAVSDGMDFTKWKRMGE 410 The following BLAST results are available for this feature:
BLAST of NO08G02850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1) Total hits: 1
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02850.1 ID=NO08G02850.1|Name=NO08G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bpback to top protein sequence of NO08G02850.1 >NO08G02850.1-protein ID=NO08G02850.1-protein|Name=NO08G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bpback to top mRNA from alignment at chr8:797836..798993- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>NO08G02850.1 ID=NO08G02850.1|Name=NO08G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp|location=Sequence derived from alignment at chr8:797836..798993- (Nannochloropsis oceanica)back to top Coding sequence (CDS) from alignment at chr8:797836..798993- >NO08G02850.1 ID=NO08G02850.1|Name=NO08G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr8:797836..798993- (Nannochloropsis oceanica)back to top Synonyms
Publications
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