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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:777070..778464 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02750.1 vs.
Match: XP_005856075.1 (RNA-binding protein with serine-rich domain 1, partial [Nannochloropsis gaditana CCMP526]; EKU20285.1 RNA-binding protein with serine-rich domain 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 246.1 bits (627), Expect = 2.100e-61 Identity = 174/270 (64.44%), Postives = 196/270 (72.59%), Query Frame = 0
Query: 1 MGRSRSVSEGSEASVASSSGAASLRSSRSRSAGGNKVEDKRRPQEQQRKKRQYDSVSPSRSRSRSPASDVGAGREKEENSGKRQRSSPSPAAPSPAASASEDEEDDEPAKLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILLGGRGGGNGGVEREMGAKAGGGRRSRSPRGRSRTRSPPARGGGRDRDLYDRNGGGP--AGGAGGREGWRGRSRSPPRGGGRGGG 269
M RSRS SE AS ASSS AA+ S+ + S+ G +ED E +++YDS PS S S A GA RE+E+N GKR RS PSPA A+ + E EEDDEPAKLHVSGL+RNVT+ HL EIF+TFG LSRVELV+DRRVGLSRGFAYVE++HRKDAEEAQLYMDGGQLDG LKVNF+LLGGR GG GG E G K GG RRSRSP RSR+RSP +RGGGR+RDLYDRNGG P GG EG RGRSRSPPRGG G
Sbjct: 2 MSRSRSCSE---ASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRYDSALPSPSHPASVAD--GAAREREDN-GKRLRS-PSPAG-GEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFS-ETGPK-GGIRRSRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRSPPRGGRHDRG 261
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02750.1 ID=NO08G02750.1|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp ATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAGCATCGGTTGCCTC TTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCTCGTTCGGCAGGTG GAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCAACAGCGCAAGAAG CGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCTCGAGGTCGCCTGC CAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAATAGTGGGAAGCGGC AGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGCCGCCTCTGCGTCG GAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACGTTTCGGGACTTAG CCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTTTCCACGTTTGGAA ATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGTGGGCTTATCAAGA GGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACGCAGAGGAAGCCCA GCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTATTAAAAGTGAACT TTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGGAGTAGAGAGAGAG ATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTTCCCCACGCGGACG GAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGGCGTGACCGAGATT TGTATGACCGAAATGGGGGAGGTCCTGCTGGTGGTGCTGGAGGACGGGAG GGGTGGCGTGGTCGCTCTCGTTCGCCGCCTCGTGGTGGAGGAAGAGGAGG AGGAGGGGGGGGGGGTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGG ACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGA GCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCC CCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAG GTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCC CTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCG GCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTC GTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTA GCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCTCTTCGCGCTGATAA GAGGAAGAGCAGCAGTCACGGGGGCTCCTCGCCTTCATATATTGGCGGGG CTCGTCGCGCTCGTATATCCGGGCAGGGGAGGGGGACGTGGAGTTGGGGA AGGAGGACCGAGAGAGAGAGAGCGAGAGGGAGTGAATGTGCGTGA back to topprotein sequence of NO08G02750.1 >NO08G02750.1-protein ID=NO08G02750.1-protein|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp MGRSRSVSEGSEASVASSSGAASLRSSRSRSAGGNKVEDKRRPQEQQRKK RQYDSVSPSRSRSRSPASDVGAGREKEENSGKRQRSSPSPAAPSPAASAS EDEEDDEPAKLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSR GFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILLGGRGGGNGGVERE MGAKAGGGRRSRSPRGRSRTRSPPARGGGRDRDLYDRNGGGPAGGAGGRE GWRGRSRSPPRGGGRGGGGGGGIETAVAPAHRRDALVLEVESVEGRVVAG AVNLLIVVSRTSEDGLPRVGGREEEEGLEVVVLGPHPPVGAVFLLLALAP LPDVGGLGADHGRTRPRRRAGAVVPPPPPPLLRRRPRRAVEEDGVGARAV AAEAPRLHIVGALRADKRKSSSHGGSSPSYIGGARRARISGQGRGTWSWG RRTERERARGSECA* back to topmRNA from alignment at chr8:777070..778464- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02750.1 ID=NO08G02750.1|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp|location=Sequence derived from alignment at chr8:777070..778464- (Nannochloropsis oceanica) ATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAGCATCGGTTGCCTC
TTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCTCGTTCGGCAGGTG
GAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCAACAGCGCAAGAAG
CGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCTCGAGGTCGCCTGC
CAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAATAGTGGGAAGCGGC
AGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGCCGCCTCTGCGTCG
GAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACGTTTCGGGACTTAG
CCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTTTCCACGTTTGGAA
ATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGTGGGCTTATCAAGA
GGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACGCAGAGGAAGCCCA
GCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTATTAAAAGTGAACT
TTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGGAGTAGAGAGAGAG
ATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTTCCCCACGCGGACG
GAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGGCGTGACCGAGATT
TGTATGACCGAAATGGGGGAGGTCCTGCTGGTGGTGCTGGAGGACGGGAG
GGGTGGCGTGGTCGCTCTCGTTCGCCGCCTCGTGGTGGAGGAAGAGGAGG
AGGAGGGGGGGGGGGTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGG
ACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGA
GCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCC
CCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAG
GTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCC
CTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCG
GCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTC
GTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTA
GCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCTCTTCGCGCTGATAA
GAGGAAGAGCAGCAGTCACGGGGGCTCCTCGCCTTCATATATTGGCGGGG
CTCGTCGCGCTCGTATATCCGGGCAGGGGAGGGGGACGTGGAGTTGGGGA
AGGAGGACCGAGAGAGAGAGAGCGAGAGGGAGTGAATGTGCGTGA back to topCoding sequence (CDS) from alignment at chr8:777070..778464- >NO08G02750.1 ID=NO08G02750.1|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at chr8:777070..778464- (Nannochloropsis oceanica) ATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAGCATCGGTTGCCTC TTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCTCGTTCGGCAGGTG GAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCAACAGCGCAAGAAG CGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCTCGAGGTCGCCTGC CAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAATAGTGGGAAGCGGC AGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGCCGCCTCTGCGTCG GAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACGTTTCGGGACTTAG CCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTTTCCACGTTTGGAA ATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGTGGGCTTATCAAGA GGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACGCAGAGGAAGCCCA GCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTATTAAAAGTGAACT TTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGGAGTAGAGAGAGAG ATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTTCCCCACGCGGACG GAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGGCGTGACCGAGATT TGTATGACCGAAATGGGGGAGGTCCTGCTGGTGGTGCTGGAGGACGGGAG GGGTGGCGTGGTCGCTCTCGTTCGCCGCCTCGTGGTGGAGGAAGAGGAGG AGGAGGGGGGGGGGGTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGG ACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGA GCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCC CCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAG GTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCC CTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCG GCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTC GTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTA GCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCTCTTCGCGCTGATAA GAGGAAGAGCAGCAGTCACGGGGGCTCCTCGCCTTCATATATTGGCGGGG CTCGTCGCGCTCGTATATCCGGGCAGGGGAGGGGGACGTGGAGTTGGGGA AGGAGGACCGAGAGAGAGAGAGCGAGAGGGAGTGAATGTGCGTGA back to top
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