NO08G02750.1, NO08G02750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02750.1
Unique NameNO08G02750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1395
Alignment locationchr8:777070..778464 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:777070..778464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02750.1 vs.
Match: XP_005856075.1 (RNA-binding protein with serine-rich domain 1, partial [Nannochloropsis gaditana CCMP526]; EKU20285.1 RNA-binding protein with serine-rich domain 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 246.1 bits (627), Expect = 2.100e-61
Identity = 174/270 (64.44%), Postives = 196/270 (72.59%), Query Frame = 0
Query:    1 MGRSRSVSEGSEASVASSSGAASLRSSRSRSAGGNKVEDKRRPQEQQRKKRQYDSVSPSRSRSRSPASDVGAGREKEENSGKRQRSSPSPAAPSPAASASEDEEDDEPAKLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSRGFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILLGGRGGGNGGVEREMGAKAGGGRRSRSPRGRSRTRSPPARGGGRDRDLYDRNGGGP--AGGAGGREGWRGRSRSPPRGGGRGGG 269
            M RSRS SE   AS ASSS AA+  S+ + S+ G  +ED     E    +++YDS  PS S   S A   GA RE+E+N GKR RS PSPA    A+ + E EEDDEPAKLHVSGL+RNVT+ HL EIF+TFG LSRVELV+DRRVGLSRGFAYVE++HRKDAEEAQLYMDGGQLDG  LKVNF+LLGGR GG GG   E G K GG RRSRSP  RSR+RSP +RGGGR+RDLYDRNGG P   GG    EG RGRSRSPPRGG    G
Sbjct:    2 MSRSRSCSE---ASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRYDSALPSPSHPASVAD--GAAREREDN-GKRLRS-PSPAG-GEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFS-ETGPK-GGIRRSRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRSPPRGGRHDRG 261          
The following BLAST results are available for this feature:
BLAST of NO08G02750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856075.12.100e-6164.44RNA-binding protein with serine-rich domain 1, par... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02750NO08G02750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02750.1NO08G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02750.1.cds1NO08G02750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02750.1 ID=NO08G02750.1|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp
ATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAGCATCGGTTGCCTC
TTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCTCGTTCGGCAGGTG
GAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCAACAGCGCAAGAAG
CGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCTCGAGGTCGCCTGC
CAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAATAGTGGGAAGCGGC
AGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGCCGCCTCTGCGTCG
GAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACGTTTCGGGACTTAG
CCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTTTCCACGTTTGGAA
ATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGTGGGCTTATCAAGA
GGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACGCAGAGGAAGCCCA
GCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTATTAAAAGTGAACT
TTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGGAGTAGAGAGAGAG
ATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTTCCCCACGCGGACG
GAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGGCGTGACCGAGATT
TGTATGACCGAAATGGGGGAGGTCCTGCTGGTGGTGCTGGAGGACGGGAG
GGGTGGCGTGGTCGCTCTCGTTCGCCGCCTCGTGGTGGAGGAAGAGGAGG
AGGAGGGGGGGGGGGTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGG
ACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGA
GCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCC
CCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAG
GTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCC
CTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCG
GCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTC
GTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTA
GCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCTCTTCGCGCTGATAA
GAGGAAGAGCAGCAGTCACGGGGGCTCCTCGCCTTCATATATTGGCGGGG
CTCGTCGCGCTCGTATATCCGGGCAGGGGAGGGGGACGTGGAGTTGGGGA
AGGAGGACCGAGAGAGAGAGAGCGAGAGGGAGTGAATGTGCGTGA
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protein sequence of NO08G02750.1

>NO08G02750.1-protein ID=NO08G02750.1-protein|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MGRSRSVSEGSEASVASSSGAASLRSSRSRSAGGNKVEDKRRPQEQQRKK
RQYDSVSPSRSRSRSPASDVGAGREKEENSGKRQRSSPSPAAPSPAASAS
EDEEDDEPAKLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSR
GFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILLGGRGGGNGGVERE
MGAKAGGGRRSRSPRGRSRTRSPPARGGGRDRDLYDRNGGGPAGGAGGRE
GWRGRSRSPPRGGGRGGGGGGGIETAVAPAHRRDALVLEVESVEGRVVAG
AVNLLIVVSRTSEDGLPRVGGREEEEGLEVVVLGPHPPVGAVFLLLALAP
LPDVGGLGADHGRTRPRRRAGAVVPPPPPPLLRRRPRRAVEEDGVGARAV
AAEAPRLHIVGALRADKRKSSSHGGSSPSYIGGARRARISGQGRGTWSWG
RRTERERARGSECA*
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mRNA from alignment at chr8:777070..778464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02750.1 ID=NO08G02750.1|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp|location=Sequence derived from alignment at chr8:777070..778464- (Nannochloropsis oceanica)
ATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAGCATCGGTTGCCTC TTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCTCGTTCGGCAGGTG GAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCAACAGCGCAAGAAG CGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCTCGAGGTCGCCTGC CAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAATAGTGGGAAGCGGC AGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGCCGCCTCTGCGTCG GAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACGTTTCGGGACTTAG CCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTTTCCACGTTTGGAA ATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGTGGGCTTATCAAGA GGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACGCAGAGGAAGCCCA GCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTATTAAAAGTGAACT TTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGGAGTAGAGAGAGAG ATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTTCCCCACGCGGACG GAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGGCGTGACCGAGATT TGTATGACCGAAATGGGGGAGGTCCTGCTGGTGGTGCTGGAGGACGGGAG GGGTGGCGTGGTCGCTCTCGTTCGCCGCCTCGTGGTGGAGGAAGAGGAGG AGGAGGGGGGGGGGGTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGG ACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGA GCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCC CCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAG GTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCC CTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCG GCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTC GTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTA GCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCTCTTCGCGCTGATAA GAGGAAGAGCAGCAGTCACGGGGGCTCCTCGCCTTCATATATTGGCGGGG CTCGTCGCGCTCGTATATCCGGGCAGGGGAGGGGGACGTGGAGTTGGGGA AGGAGGACCGAGAGAGAGAGAGCGAGAGGGAGTGAATGTGCGTGA
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Coding sequence (CDS) from alignment at chr8:777070..778464-

>NO08G02750.1 ID=NO08G02750.1|Name=NO08G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at chr8:777070..778464- (Nannochloropsis oceanica)
ATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAGCATCGGTTGCCTC
TTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCTCGTTCGGCAGGTG
GAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCAACAGCGCAAGAAG
CGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCTCGAGGTCGCCTGC
CAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAATAGTGGGAAGCGGC
AGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGCCGCCTCTGCGTCG
GAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACGTTTCGGGACTTAG
CCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTTTCCACGTTTGGAA
ATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGTGGGCTTATCAAGA
GGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACGCAGAGGAAGCCCA
GCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTATTAAAAGTGAACT
TTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGGAGTAGAGAGAGAG
ATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTTCCCCACGCGGACG
GAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGGCGTGACCGAGATT
TGTATGACCGAAATGGGGGAGGTCCTGCTGGTGGTGCTGGAGGACGGGAG
GGGTGGCGTGGTCGCTCTCGTTCGCCGCCTCGTGGTGGAGGAAGAGGAGG
AGGAGGGGGGGGGGGTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGG
ACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGA
GCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCC
CCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAG
GTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCC
CTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCG
GCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTC
GTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTA
GCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCTCTTCGCGCTGATAA
GAGGAAGAGCAGCAGTCACGGGGGCTCCTCGCCTTCATATATTGGCGGGG
CTCGTCGCGCTCGTATATCCGGGCAGGGGAGGGGGACGTGGAGTTGGGGA
AGGAGGACCGAGAGAGAGAGAGCGAGAGGGAGTGAATGTGCGTGA
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Synonyms
Publications