NO08G02720.1, NO08G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02720.1
Unique NameNO08G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr8:759013..760485 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:759013..760485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02720.1 vs.
Match: EWM26713.1 (folylpolyglutamate synthase [Nannochloropsis gaditana])

HSP 1 Score: 686.4 bits (1770), Expect = 6.400e-194
Identity = 349/483 (72.26%), Postives = 408/483 (84.47%), Query Frame = 0 
Query:    2 ASANMSRYETLVRKLYQVNLYCTAKLGLENIQALHQASGSPLKRVPNIIHVGGTNGKGSVAFKLAKALEYSHIRTGLFVSPHIASFRERMQVDGQLITEAEVEELLGEVLRVREVQAIPATFFEITTALAFNFFSRRQLGAAVIEVGLGGRLDATNIIH-PRLSIITSIGLEHTRILGTTIQAIAREKAGIIKPGVPVVLGPHVPHDLLGSIAAERSAPVLLVPKGPYPNFEEENTAIARTALNHLRTSSPPLAWSQGADTEAALVRGLQSRPPCRFEELERQVAGQTVRVVLDVGHNPPALRRLFERLLSPTKRDMKTQKISALTEAEKPVIRLVLGLSADKDITECLQTVLQFVDPSHVHIIQARHPRAAAPQALVSAAASLGAPLPRMNYGYANIKEGIGAALHAAVSAYGG---------GDRDEQKRPETVVVCGTFFIMGEVREALGLTEPHDSAVIAEVAGAQFAAAQELFENVPS 475
            ++  MSRYE LVRKLYQVN+YC AKLGL+NIQALHQA G PL+RVPNI+HVGGTNGKGSVAFKLAK LEYS+IRTGLFVSPHIASFRERMQV+G+LI+EAEVE LL E++ VR  QAIPATFFEITTALAF+FF+RR+LGAAV+EVGLGGRLDATNII  PRL+++TSIGLEHT+ILG++I+AIAREKAGIIKPGVP++LGPHVPHD LG+IAAER +PVLLVPKGPYPNFEEENTAIARTAL +LRTS P L W +G + + AL RGL+SRPPCRF+E+ER+V  ++VRVVLDVGHNPPALRRLFERLLSPTK +++ +   A    ++PV+RLVLGLSADKDI ECLQTVL FV P  +HIIQARHPRAA P ALV AAA+LGA LP  NYGYA+++EGI  AL AA  ++            +  + +  ETVVVCG+FFIMGEVR ALG+ EP DSAVI+EVAGAQF+AAQE+F N  S
Sbjct:    4 SATKMSRYELLVRKLYQVNMYCAAKLGLDNIQALHQAIGRPLQRVPNIVHVGGTNGKGSVAFKLAKCLEYSNIRTGLFVSPHIASFRERMQVNGELISEAEVETLLSEIMEVRGAQAIPATFFEITTALAFSFFARRELGAAVVEVGLGGRLDATNIIEKPRLAVLTSIGLEHTKILGSSIEAIAREKAGIIKPGVPIILGPHVPHDFLGAIAAERQSPVLLVPKGPYPNFEEENTAIARTALEYLRTSQPALPWREGPEGDLALARGLRSRPPCRFQEMERRVGNRSVRVVLDVGHNPPALRRLFERLLSPTKSELQARGAQAPPAWKEPVVRLVLGLSADKDIRECLQTVLAFVPPPRLHIIQARHPRAATPMALVEAAAALGASLPSGNYGYASVQEGIDTALQAAAVSFTKRAESDNLEMDENTKNEAQETVVVCGSFFIMGEVRRALGIKEPQDSAVISEVAGAQFSAAQEVFLNQSS 486
The following BLAST results are available for this feature:
BLAST of NO08G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26713.16.400e-19472.26folylpolyglutamate synthase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02720NO08G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02720.1NO08G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02720.1.cds1NO08G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02720.1 ID=NO08G02720.1|Name=NO08G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGGCCTCCGCAAACATGTCGCGGTATGAGACGCTGGTACGGAAGCTGTA
CCAGGTGAATTTGTACTGCACTGCCAAGTTGGGCCTGGAAAACATTCAGG
CGTTGCATCAGGCCAGTGGCAGCCCTCTGAAGCGGGTGCCAAATATTATC
CACGTGGGCGGGACTAACGGCAAAGGGTCGGTGGCTTTCAAGCTGGCCAA
GGCCTTGGAGTACTCCCACATCCGGACGGGTCTTTTCGTATCCCCACACA
TTGCCAGCTTTCGGGAGCGCATGCAGGTGGACGGGCAGTTGATCACCGAG
GCAGAGGTAGAGGAGCTTTTGGGAGAGGTGTTGCGAGTCCGCGAAGTTCA
AGCAATCCCAGCTACATTTTTTGAAATCACAACTGCACTGGCCTTTAACT
TCTTTTCTCGTCGGCAGCTGGGGGCAGCGGTGATAGAAGTGGGTTTGGGC
GGGCGTTTGGACGCGACCAACATTATTCATCCTCGCCTCTCCATCATCAC
GTCTATTGGCCTCGAGCACACCAGGATCCTCGGCACCACCATTCAAGCAA
TAGCACGCGAAAAGGCGGGTATTATCAAGCCCGGTGTGCCTGTCGTTCTG
GGCCCACACGTTCCCCATGACTTGCTGGGCTCCATCGCTGCCGAGCGTAG
CGCGCCCGTCCTGCTGGTGCCCAAGGGGCCCTACCCGAATTTTGAAGAGG
AAAACACTGCCATTGCCCGCACCGCACTCAATCACCTGCGGACGTCCAGC
CCGCCCTTGGCCTGGTCACAAGGTGCAGATACCGAGGCAGCTTTGGTGCG
AGGCCTGCAGAGTCGGCCCCCGTGTCGGTTTGAAGAGTTAGAGCGACAGG
TGGCCGGCCAAACAGTGCGGGTCGTCCTGGACGTGGGGCACAACCCCCCC
GCCCTCCGCCGGCTCTTCGAACGCCTTCTTTCCCCAACGAAACGAGACAT
GAAAACGCAAAAGATTAGCGCGTTGACTGAGGCTGAGAAACCGGTGATTC
GCCTCGTGCTTGGGCTATCAGCAGATAAGGACATTACGGAGTGCCTTCAA
ACAGTCCTCCAGTTCGTTGACCCTTCTCACGTACACATAATCCAAGCCCG
CCACCCACGCGCCGCTGCACCGCAAGCCCTTGTCTCCGCCGCTGCTTCTT
TAGGCGCGCCATTGCCGAGGATGAATTATGGGTATGCGAACATCAAAGAA
GGGATTGGCGCTGCTCTCCACGCAGCCGTGAGTGCATATGGGGGTGGGGA
CCGAGATGAACAAAAGCGACCAGAAACAGTGGTGGTATGTGGGACATTTT
TCATCATGGGCGAGGTCAGAGAAGCGCTGGGTCTTACCGAACCTCATGAC
TCGGCAGTGATAGCGGAAGTTGCGGGTGCACAGTTTGCGGCGGCGCAAGA
ACTGTTTGAGAATGTGCCTTCATCCCTCCCCCCCCGGTCGTCCTCGTCGT
TGTCGACGATCAACGGTGGGTAG
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protein sequence of NO08G02720.1

>NO08G02720.1-protein ID=NO08G02720.1-protein|Name=NO08G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MASANMSRYETLVRKLYQVNLYCTAKLGLENIQALHQASGSPLKRVPNII
HVGGTNGKGSVAFKLAKALEYSHIRTGLFVSPHIASFRERMQVDGQLITE
AEVEELLGEVLRVREVQAIPATFFEITTALAFNFFSRRQLGAAVIEVGLG
GRLDATNIIHPRLSIITSIGLEHTRILGTTIQAIAREKAGIIKPGVPVVL
GPHVPHDLLGSIAAERSAPVLLVPKGPYPNFEEENTAIARTALNHLRTSS
PPLAWSQGADTEAALVRGLQSRPPCRFEELERQVAGQTVRVVLDVGHNPP
ALRRLFERLLSPTKRDMKTQKISALTEAEKPVIRLVLGLSADKDITECLQ
TVLQFVDPSHVHIIQARHPRAAAPQALVSAAASLGAPLPRMNYGYANIKE
GIGAALHAAVSAYGGGDRDEQKRPETVVVCGTFFIMGEVREALGLTEPHD
SAVIAEVAGAQFAAAQELFENVPSSLPPRSSSSLSTINGG*
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mRNA from alignment at chr8:759013..760485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02720.1 ID=NO08G02720.1|Name=NO08G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at chr8:759013..760485+ (Nannochloropsis oceanica)
ATGGCCTCCGCAAACATGTCGCGGTATGAGACGCTGGTACGGAAGCTGTA
CCAGGTGAATTTGTACTGCACTGCCAAGTTGGGCCTGGAAAACATTCAGG
CGTTGCATCAGGCCAGTGGCAGCCCTCTGAAGCGGGTGCCAAATATTATC
CACGTGGGCGGGACTAACGGCAAAGGGTCGGTGGCTTTCAAGCTGGCCAA
GGCCTTGGAGTACTCCCACATCCGGACGGGTCTTTTCGTATCCCCACACA
TTGCCAGCTTTCGGGAGCGCATGCAGGTGGACGGGCAGTTGATCACCGAG
GCAGAGGTAGAGGAGCTTTTGGGAGAGGTGTTGCGAGTCCGCGAAGTTCA
AGCAATCCCAGCTACATTTTTTGAAATCACAACTGCACTGGCCTTTAACT
TCTTTTCTCGTCGGCAGCTGGGGGCAGCGGTGATAGAAGTGGGTTTGGGC
GGGCGTTTGGACGCGACCAACATTATTCATCCTCGCCTCTCCATCATCAC
GTCTATTGGCCTCGAGCACACCAGGATCCTCGGCACCACCATTCAAGCAA
TAGCACGCGAAAAGGCGGGTATTATCAAGCCCGGTGTGCCTGTCGTTCTG
GGCCCACACGTTCCCCATGACTTGCTGGGCTCCATCGCTGCCGAGCGTAG
CGCGCCCGTCCTGCTGGTGCCCAAGGGGCCCTACCCGAATTTTGAAGAGG
AAAACACTGCCATTGCCCGCACCGCACTCAATCACCTGCGGACGTCCAGC
CCGCCCTTGGCCTGGTCACAAGGTGCAGATACCGAGGCAGCTTTGGTGCG
AGGCCTGCAGAGTCGGCCCCCGTGTCGGTTTGAAGAGTTAGAGCGACAGG
TGGCCGGCCAAACAGTGCGGGTCGTCCTGGACGTGGGGCACAACCCCCCC
GCCCTCCGCCGGCTCTTCGAACGCCTTCTTTCCCCAACGAAACGAGACAT
GAAAACGCAAAAGATTAGCGCGTTGACTGAGGCTGAGAAACCGGTGATTC
GCCTCGTGCTTGGGCTATCAGCAGATAAGGACATTACGGAGTGCCTTCAA
ACAGTCCTCCAGTTCGTTGACCCTTCTCACGTACACATAATCCAAGCCCG
CCACCCACGCGCCGCTGCACCGCAAGCCCTTGTCTCCGCCGCTGCTTCTT
TAGGCGCGCCATTGCCGAGGATGAATTATGGGTATGCGAACATCAAAGAA
GGGATTGGCGCTGCTCTCCACGCAGCCGTGAGTGCATATGGGGGTGGGGA
CCGAGATGAACAAAAGCGACCAGAAACAGTGGTGGTATGTGGGACATTTT
TCATCATGGGCGAGGTCAGAGAAGCGCTGGGTCTTACCGAACCTCATGAC
TCGGCAGTGATAGCGGAAGTTGCGGGTGCACAGTTTGCGGCGGCGCAAGA
ACTGTTTGAGAATGTGCCTTCATCCCTCCCCCCCCGGTCGTCCTCGTCGT
TGTCGACGATCAACGGTGGGTAG
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Coding sequence (CDS) from alignment at chr8:759013..760485+

>NO08G02720.1 ID=NO08G02720.1|Name=NO08G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr8:759013..760485+ (Nannochloropsis oceanica)
ATGGCCTCCGCAAACATGTCGCGGTATGAGACGCTGGTACGGAAGCTGTA
CCAGGTGAATTTGTACTGCACTGCCAAGTTGGGCCTGGAAAACATTCAGG
CGTTGCATCAGGCCAGTGGCAGCCCTCTGAAGCGGGTGCCAAATATTATC
CACGTGGGCGGGACTAACGGCAAAGGGTCGGTGGCTTTCAAGCTGGCCAA
GGCCTTGGAGTACTCCCACATCCGGACGGGTCTTTTCGTATCCCCACACA
TTGCCAGCTTTCGGGAGCGCATGCAGGTGGACGGGCAGTTGATCACCGAG
GCAGAGGTAGAGGAGCTTTTGGGAGAGGTGTTGCGAGTCCGCGAAGTTCA
AGCAATCCCAGCTACATTTTTTGAAATCACAACTGCACTGGCCTTTAACT
TCTTTTCTCGTCGGCAGCTGGGGGCAGCGGTGATAGAAGTGGGTTTGGGC
GGGCGTTTGGACGCGACCAACATTATTCATCCTCGCCTCTCCATCATCAC
GTCTATTGGCCTCGAGCACACCAGGATCCTCGGCACCACCATTCAAGCAA
TAGCACGCGAAAAGGCGGGTATTATCAAGCCCGGTGTGCCTGTCGTTCTG
GGCCCACACGTTCCCCATGACTTGCTGGGCTCCATCGCTGCCGAGCGTAG
CGCGCCCGTCCTGCTGGTGCCCAAGGGGCCCTACCCGAATTTTGAAGAGG
AAAACACTGCCATTGCCCGCACCGCACTCAATCACCTGCGGACGTCCAGC
CCGCCCTTGGCCTGGTCACAAGGTGCAGATACCGAGGCAGCTTTGGTGCG
AGGCCTGCAGAGTCGGCCCCCGTGTCGGTTTGAAGAGTTAGAGCGACAGG
TGGCCGGCCAAACAGTGCGGGTCGTCCTGGACGTGGGGCACAACCCCCCC
GCCCTCCGCCGGCTCTTCGAACGCCTTCTTTCCCCAACGAAACGAGACAT
GAAAACGCAAAAGATTAGCGCGTTGACTGAGGCTGAGAAACCGGTGATTC
GCCTCGTGCTTGGGCTATCAGCAGATAAGGACATTACGGAGTGCCTTCAA
ACAGTCCTCCAGTTCGTTGACCCTTCTCACGTACACATAATCCAAGCCCG
CCACCCACGCGCCGCTGCACCGCAAGCCCTTGTCTCCGCCGCTGCTTCTT
TAGGCGCGCCATTGCCGAGGATGAATTATGGGTATGCGAACATCAAAGAA
GGGATTGGCGCTGCTCTCCACGCAGCCGTGAGTGCATATGGGGGTGGGGA
CCGAGATGAACAAAAGCGACCAGAAACAGTGGTGGTATGTGGGACATTTT
TCATCATGGGCGAGGTCAGAGAAGCGCTGGGTCTTACCGAACCTCATGAC
TCGGCAGTGATAGCGGAAGTTGCGGGTGCACAGTTTGCGGCGGCGCAAGA
ACTGTTTGAGAATGTGCCTTCATCCCTCCCCCCCCGGTCGTCCTCGTCGT
TGTCGACGATCAACGGTGGGTAG
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Synonyms
Publications