NO08G02700.1, NO08G02700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02700.1
Unique NameNO08G02700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2002
Alignment locationchr8:756736..758737 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:756736..758737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02700.1 vs.
Match: EWM26751.1 (hypothetical protein Naga_100001g178 [Nannochloropsis gaditana])

HSP 1 Score: 317.0 bits (811), Expect = 1.200e-82
Identity = 240/550 (43.64%), Postives = 332/550 (60.36%), Query Frame = 0 
Query:   54 ESLDEREADLKQCVDELARLEGYHAYVNEILLSAGNGDAFNSKCASSSSTDPEIVIDDPFLLCNAAERLVLEAVAGRRAHLYLLDT--VAEN----DGKV---YLQSWLVDEDGQREVARVPVEARREEDEQDPEKA-SAAHALVCALQEEEPLLPGGACLVARVVDRAGLVLGVVQIIKRQRSLGSQDEADSPFTQADLAALGNVQDQLASTLLLLRLLQRRNRLQDNMVAIAAHNNMLTSSNSNDNSRSS--SPQRMRSLRTSPAAAATATGTDVSTTFCPTLSNGRMPVSSFCKVTARGREAIIREEEEKAAIAGATAITSQIQLQQQHEEE---EGLRGKYIKAKIYIRQLEKELRQKVRGQERALLARQASEGAKRIFGRVEEMEALVAELSIRQEQLRYENDALSTAKIQAELAANAATAQAEAKARMEIDTLAESKARAEVELRAQIRQLEREQETVKATVARLKAEAKASEVEREQMRHDMRRCQKKLEKSQNAVKDARVYQEITQAELLDLKESLQRMEAGTNDLRQQLLCQEGEGEGGRP 589
            + +D  + + +  VDEL RLEGYHA++NEILLS   G   N      S   P+ VIDDP  L  AAE+LVL  +A R A+LYLL +  +A N     G +   +L SW +DE GQ  + R+PV  +++E E+  E+  S A  L  AL+EE PLL GG  LVAR++DR G VLG+V++   +     +D     F QA ++AL +VQD+LAS LLLLRL+  R++ +D ++A   +        + D + S   SP    S R   A++A                 G  PV+ F + T+  R+A     ++    A A +I    +L QQ  E      LR KY+KAK YIR+LE+ LR K R + RALLARQA+EGA+R+F R EE++AL+ ELS RQEQLR EN+ L  AK++A  AANAA++Q EA+AR + ++LA + AR+E ELR ++ QL+ E   ++A   R +AE  A   ++E++  D+ RCQKKL+ SQ AVK AR YQEI+QAEL DLKESL+RMEAGTN+LRQ     +   +GG P
Sbjct:   26 QKIDSSQMECEASVDELRRLEGYHAFMNEILLSGAVGSLSNGDSDVFSPLTPQAVIDDPISLSRAAEKLVLNTIASRHANLYLLHSPSIASNILGHGGNLLPLFLTSWSMDERGQPRIKRIPVAMQQDEIERMEEEGDSTALGLNIALREEGPLLLGGVSLVARILDRKGQVLGLVEVTIDK---APEDFDGDIFPQAQVSALDSVQDELASVLLLLRLVLLRSQREDPLLAPCVNQ-------AGDPAASGIVSP----STRRIQASSAL----------------GNPPVNRFSENTSFPRKAHFDSGDKFDGEALAPSIGFAGELAQQPPERGELNALRQKYLKAKSYIRRLERGLRLKTRSEGRALLARQATEGAERLFARTEELQALITELSGRQEQLRLENETLRAAKVKALDAANAASSQ-EAEARTQFESLARTHARSEDELRTRVYQLDSESRAMRANAVRYEAEKNALIRDKERLERDLLRCQKKLKDSQQAVKQARDYQEISQAELWDLKESLERMEAGTNELRQHFQYSQNY-DGGDP 543
The following BLAST results are available for this feature:
BLAST of NO08G02700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26751.11.200e-8243.64hypothetical protein Naga_100001g178 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02700NO08G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02700.1NO08G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02700.1.cds1NO08G02700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02700.1 ID=NO08G02700.1|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp
TCATTTCTCTACATCGCCCCTCTCACATGTTTCCCGATTACCACCCTTAT
GTCTACAGGGTAAGCCACCAGGTCGGCTGGCAAAGCACGTCATGTCTACC
GAGAGGGTGCAATCAGCCTGACTCGCCGACAGCGGGGACGTTATGCCTGA
TATACGGCCGTTGGCCGCCTCGCCCCCTTTTGCCGAGACTCCACGCCATG
CACAAACAACCGTGCCATCCTTATCACCACAGCGCAATCACAACATGCAT
GAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAAGTGCTGCA
AGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGTCGATGAGC
TTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCCTGCTCAGT
GCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCATCCTCTAC
TGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAACGCTGCAG
AAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACCTCTATCTG
CTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAGAGCTGGTT
AGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGTGGAAGCAC
GGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTGCGCATGCA
TTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGGGGCGCATG
CCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGGAGTGGTGC
AGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAGCAGATAGC
CCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAAGACCAGTT
GGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAATCGGCTGC
AAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTACCAGCAGC
AACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATGCGTAGCTT
GAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGACGTGTCCA
CTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCTCATCTTTC
TGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAAGAGGAGGA
AAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGATACAGCTAC
AGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACATCAAGGCC
AAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAGGTGAGGGG
GCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGCCAAACGTA
TATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAACTCTCCATA
AGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACAGCCAAGAT
ACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGAGGCGAAAG
CCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTGCCGAGGTG
GAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAAACAGTGAA
GGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGAGGTGGAAA
GGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGCTGGAGAAG
AGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATTACCCAAGC
GGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGCCGGGACGA
ACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAGAGGGTGGG
AGGCCGAGGGTTTTGTAAGAAAGGCGAAATATTAGGGGGGTATTTGTACA
TATTAGAAGTAAAGTACAACAGAAAAACCGAAGGAATACATTAATAAGAC
TG
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protein sequence of NO08G02700.1

>NO08G02700.1-protein ID=NO08G02700.1-protein|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPDIRPLAASPPFAETPRHAQTTVPSLSPQRNHNMHELSTLWQFERDTCK
VLQESLDEREADLKQCVDELARLEGYHAYVNEILLSAGNGDAFNSKCASS
SSTDPEIVIDDPFLLCNAAERLVLEAVAGRRAHLYLLDTVAENDGKVYLQ
SWLVDEDGQREVARVPVEARREEDEQDPEKASAAHALVCALQEEEPLLPG
GACLVARVVDRAGLVLGVVQIIKRQRSLGSQDEADSPFTQADLAALGNVQ
DQLASTLLLLRLLQRRNRLQDNMVAIAAHNNMLTSSNSNDNSRSSSPQRM
RSLRTSPAAAATATGTDVSTTFCPTLSNGRMPVSSFCKVTARGREAIIRE
EEEKAAIAGATAITSQIQLQQQHEEEEGLRGKYIKAKIYIRQLEKELRQK
VRGQERALLARQASEGAKRIFGRVEEMEALVAELSIRQEQLRYENDALST
AKIQAELAANAATAQAEAKARMEIDTLAESKARAEVELRAQIRQLEREQE
TVKATVARLKAEAKASEVEREQMRHDMRRCQKKLEKSQNAVKDARVYQEI
TQAELLDLKESLQRMEAGTNDLRQQLLCQEGEGEGGRPRVL*
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mRNA from alignment at chr8:756736..758737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02700.1 ID=NO08G02700.1|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp|location=Sequence derived from alignment at chr8:756736..758737- (Nannochloropsis oceanica)
TCATTTCTCTACATCGCCCCTCTCACATGTTTCCCGATTACCACCCTTAT
GTCTACAGGGTAAGCCACCAGGTCGGCTGGCAAAGCACGTCATGTCTACC
GAGAGGGTGCAATCAGCCTGACTCGCCGACAGCGGGGACGTTATGCCTGA
TATACGGCCGTTGGCCGCCTCGCCCCCTTTTGCCGAGACTCCACGCCATG
CACAAACAACCGTGCCATCCTTATCACCACAGCGCAATCACAACATGCAT
GAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAAGTGCTGCA
AGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGTCGATGAGC
TTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCCTGCTCAGT
GCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCATCCTCTAC
TGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAACGCTGCAG
AAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACCTCTATCTG
CTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAGAGCTGGTT
AGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGTGGAAGCAC
GGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTGCGCATGCA
TTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGGGGCGCATG
CCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGGAGTGGTGC
AGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAGCAGATAGC
CCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAAGACCAGTT
GGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAATCGGCTGC
AAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTACCAGCAGC
AACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATGCGTAGCTT
GAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGACGTGTCCA
CTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCTCATCTTTC
TGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAAGAGGAGGA
AAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGATACAGCTAC
AGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACATCAAGGCC
AAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAGGTGAGGGG
GCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGCCAAACGTA
TATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAACTCTCCATA
AGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACAGCCAAGAT
ACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGAGGCGAAAG
CCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTGCCGAGGTG
GAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAAACAGTGAA
GGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGAGGTGGAAA
GGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGCTGGAGAAG
AGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATTACCCAAGC
GGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGCCGGGACGA
ACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAGAGGGTGGG
AGGCCGAGGGTTTTGTAAGAAAGGCGAAATATTAGGGGGGTATTTGTACA
TATTAGAAGTAAAGTACAACAGAAAAACCGAAGGAATACATTAATAAGAC
TG
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Coding sequence (CDS) from alignment at chr8:756736..758737-

>NO08G02700.1 ID=NO08G02700.1|Name=NO08G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr8:756736..758737- (Nannochloropsis oceanica)
ATGCCTGATATACGGCCGTTGGCCGCCTCGCCCCCTTTTGCCGAGACTCC
ACGCCATGCACAAACAACCGTGCCATCCTTATCACCACAGCGCAATCACA
ACATGCATGAGCTGTCGACCCTATGGCAATTCGAGCGGGACACCTGCAAA
GTGCTGCAAGAGAGCCTCGATGAGCGGGAGGCAGACCTAAAGCAGTGTGT
CGATGAGCTTGCGCGCTTGGAGGGATATCACGCATACGTAAATGAAATCC
TGCTCAGTGCAGGGAACGGTGATGCTTTCAATTCGAAGTGTGCCTCGTCA
TCCTCTACTGACCCGGAGATTGTAATCGACGACCCCTTCTTACTGTGCAA
CGCTGCAGAAAGACTTGTGTTGGAGGCAGTAGCCGGTCGACGGGCGCACC
TCTATCTGCTCGACACCGTGGCGGAAAACGATGGCAAAGTGTATCTTCAG
AGCTGGTTAGTCGATGAAGATGGACAGCGTGAGGTGGCGCGGGTGCCCGT
GGAAGCACGGCGAGAGGAGGACGAGCAGGATCCTGAGAAGGCCTCGGCTG
CGCATGCATTGGTCTGTGCGCTGCAAGAAGAGGAGCCCTTGCTACCGGGG
GGCGCATGCCTAGTCGCAAGAGTTGTGGACCGAGCAGGGCTTGTCTTGGG
AGTGGTGCAGATCATAAAGCGGCAGCGGTCTCTAGGGAGCCAAGACGAAG
CAGATAGCCCTTTCACACAAGCAGATTTAGCAGCCCTGGGCAACGTGCAA
GACCAGTTGGCATCCACCCTCTTGCTCCTCCGCCTGCTACAAAGGCGGAA
TCGGCTGCAAGACAACATGGTAGCCATAGCCGCTCACAACAATATGCTTA
CCAGCAGCAACAGTAACGACAACAGCAGAAGCAGCAGTCCGCAGCGGATG
CGTAGCTTGAGAACTTCCCCAGCGGCAGCAGCAACCGCGACGGGAACCGA
CGTGTCCACTACATTCTGTCCCACACTCTCCAACGGACGTATGCCCGTCT
CATCTTTCTGCAAAGTCACGGCACGAGGACGAGAGGCTATCATCAGGGAA
GAGGAGGAAAAGGCAGCAATAGCCGGAGCAACCGCCATAACCAGCCAGAT
ACAGCTACAGCAGCAGCACGAAGAAGAAGAAGGATTGAGAGGGAAATACA
TCAAGGCCAAGATCTACATTCGTCAACTAGAGAAGGAGCTCAGACAGAAG
GTGAGGGGGCAAGAGCGGGCGTTGCTTGCCCGGCAGGCGAGTGAGGGAGC
CAAACGTATATTTGGCAGGGTGGAAGAAATGGAAGCACTCGTAGCTGAAC
TCTCCATAAGGCAAGAGCAGCTAAGATACGAGAATGATGCACTTTCAACA
GCCAAGATACAGGCTGAGTTAGCAGCAAACGCAGCAACAGCCCAAGCCGA
GGCGAAAGCCCGCATGGAAATCGATACGTTGGCTGAGTCTAAAGCACGTG
CCGAGGTGGAATTGCGTGCTCAAATTCGTCAGCTGGAGCGGGAGCAAGAA
ACAGTGAAGGCCACAGTGGCCCGATTGAAAGCGGAGGCGAAGGCGTCAGA
GGTGGAAAGGGAGCAGATGCGGCATGATATGCGGCGATGCCAAAAAAAGC
TGGAGAAGAGCCAGAACGCTGTGAAGGACGCGCGAGTGTATCAAGAAATT
ACCCAAGCGGAGCTCTTGGATTTGAAGGAAAGTCTGCAGCGCATGGAAGC
CGGGACGAACGATTTGCGTCAACAGCTGTTATGTCAGGAAGGGGAGGGAG
AGGGTGGGAGGCCGAGGGTTTTGTAA
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Synonyms
Publications