NO08G02690.1, NO08G02690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02690.1
Unique NameNO08G02690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr8:755416..756498 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:755416..756498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G02690.1 vs.
Match: EWM26623.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 1.500e-11
Identity = 101/268 (37.69%), Postives = 140/268 (52.24%), Query Frame = 0 
Query:   40 PRQVLQQRQPVALSVMTIVLDQNEDLLLAIAESQRLGKNVRAAKYQRQLQENLLVLTQLCDSQEYHHKSFRDLAMKKLPKQKR-ATVKETSASEIGQGI-GQTISN-QPQPLAVP--SQQQLIQAQPNN---AGDLSAATSNALVPAQQEGGERGGEGSGKGGGSGEGDGREGIIYQPLSQQQQPQQ--LQQQLMMMPQHARFQSMQPRQQHQPLQQQQQQQQQVREGSGEGGRGGGMVQPQQQLELMQQH---ILQQQQILQQHQQQ 295
            P     Q   + LSVMT VLDQNED+LLAI+ESQRLG+NVRAAKYQRQLQENLLVLTQLCDSQEY+ KSFR++A+KKLP+Q++ AT     + ++   + G  I++ Q Q    P   Q Q  Q Q  +   A + ++   +AL P+  +G     +           D  +     PLS  +   Q  LQ Q +        +  Q   Q   +Q  QQ                 ++  QQ L+  QQH   I+ QQ++L + Q++
Sbjct:    5 PELSQHQHTSLTLSVMTTVLDQNEDILLAISESQRLGENVRAAKYQRQLQENLLVLTQLCDSQEYYPKSFREMALKKLPRQRKIATEMPVPSMDVLHCVDGANITHRQAQQRVSPLCRQPQAFQEQQKSCLGARNDTSCNKSALSPSVIDGDHISLQRLHTAQPLSMSDAAD-----PLSMDRHKAQLTLQSQSLNTGGGEMLKMAQASPQDDAMQLMQQH----------------ILHQQQMLQQHQQHYQAIIHQQELLDERQRE 251
The following BLAST results are available for this feature:
BLAST of NO08G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26623.11.500e-1137.69SANT/Myb domain protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02690NO08G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02690.1NO08G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02690.1.cds1NO08G02690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02690.1 ID=NO08G02690.1|Name=NO08G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ATGGAGCCTCCCTCTTTCCTTGCAGCATCCGCTGCATCAGCGACATCAGA
AGGACCACAGCCTCTGTCGCCGCCGCCGCAGCAGCAACCGCAGCAACCGA
AGGTCAAGCAGCGACAACCACGGCAGGTCCTGCAGCAGAGGCAGCCCGTG
GCGCTCTCCGTCATGACAATCGTCCTAGATCAGAACGAGGACTTGCTTCT
TGCCATCGCGGAAAGCCAGCGTCTGGGCAAGAATGTGCGGGCGGCTAAGT
ACCAACGGCAGCTCCAGGAAAACCTTTTGGTCTTGACTCAGCTATGTGAC
AGTCAAGAGTATCACCATAAGTCGTTTCGGGACCTGGCCATGAAGAAATT
ACCCAAGCAAAAAAGAGCAACTGTTAAGGAAACATCAGCATCTGAAATTG
GTCAAGGGATCGGGCAAACAATCTCGAATCAGCCGCAGCCGCTCGCCGTT
CCTTCGCAGCAGCAATTAATACAGGCCCAACCGAACAATGCAGGGGACCT
ATCGGCTGCGACAAGCAATGCTCTTGTGCCTGCGCAGCAAGAAGGAGGAG
AAAGAGGAGGGGAGGGAAGTGGAAAGGGAGGAGGAAGTGGAGAGGGAGAC
GGGAGGGAGGGGATAATCTATCAACCTCTGTCACAGCAACAACAACCCCA
ACAATTGCAGCAGCAGCTCATGATGATGCCTCAGCACGCGCGATTTCAAT
CGATGCAGCCGAGGCAACAACATCAACCACTTCAACAGCAGCAGCAGCAG
CAGCAGCAGGTTAGAGAAGGAAGTGGAGAAGGGGGAAGGGGAGGGGGAAT
GGTACAACCACAACAGCAGCTAGAGCTGATGCAGCAGCATATCCTCCAAC
AGCAGCAAATATTGCAGCAGCACCAGCAGCAATACCAAGCGATGGTCTAC
CAACAGCAGCTTCTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCGCTATCAACAACAACAACTACAGCAGCAGCAAGATCAAAAAGGAG
AACGAGGGCCAGGACGAGGAGGGGGGGTGGGGGGGCAGCCGCGGGCCCTT
CAGCCCTTGTACAGACGCCAATGGGGCTCATGA
back to top

protein sequence of NO08G02690.1

>NO08G02690.1-protein ID=NO08G02690.1-protein|Name=NO08G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MEPPSFLAASAASATSEGPQPLSPPPQQQPQQPKVKQRQPRQVLQQRQPV
ALSVMTIVLDQNEDLLLAIAESQRLGKNVRAAKYQRQLQENLLVLTQLCD
SQEYHHKSFRDLAMKKLPKQKRATVKETSASEIGQGIGQTISNQPQPLAV
PSQQQLIQAQPNNAGDLSAATSNALVPAQQEGGERGGEGSGKGGGSGEGD
GREGIIYQPLSQQQQPQQLQQQLMMMPQHARFQSMQPRQQHQPLQQQQQQ
QQQVREGSGEGGRGGGMVQPQQQLELMQQHILQQQQILQQHQQQYQAMVY
QQQLLQQQQQQQQQQQQQRYQQQQLQQQQDQKGERGPGRGGGVGGQPRAL
QPLYRRQWGS*
back to top

mRNA from alignment at chr8:755416..756498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02690.1 ID=NO08G02690.1|Name=NO08G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp|location=Sequence derived from alignment at chr8:755416..756498- (Nannochloropsis oceanica)
ATGGAGCCTCCCTCTTTCCTTGCAGCATCCGCTGCATCAGCGACATCAGA
AGGACCACAGCCTCTGTCGCCGCCGCCGCAGCAGCAACCGCAGCAACCGA
AGGTCAAGCAGCGACAACCACGGCAGGTCCTGCAGCAGAGGCAGCCCGTG
GCGCTCTCCGTCATGACAATCGTCCTAGATCAGAACGAGGACTTGCTTCT
TGCCATCGCGGAAAGCCAGCGTCTGGGCAAGAATGTGCGGGCGGCTAAGT
ACCAACGGCAGCTCCAGGAAAACCTTTTGGTCTTGACTCAGCTATGTGAC
AGTCAAGAGTATCACCATAAGTCGTTTCGGGACCTGGCCATGAAGAAATT
ACCCAAGCAAAAAAGAGCAACTGTTAAGGAAACATCAGCATCTGAAATTG
GTCAAGGGATCGGGCAAACAATCTCGAATCAGCCGCAGCCGCTCGCCGTT
CCTTCGCAGCAGCAATTAATACAGGCCCAACCGAACAATGCAGGGGACCT
ATCGGCTGCGACAAGCAATGCTCTTGTGCCTGCGCAGCAAGAAGGAGGAG
AAAGAGGAGGGGAGGGAAGTGGAAAGGGAGGAGGAAGTGGAGAGGGAGAC
GGGAGGGAGGGGATAATCTATCAACCTCTGTCACAGCAACAACAACCCCA
ACAATTGCAGCAGCAGCTCATGATGATGCCTCAGCACGCGCGATTTCAAT
CGATGCAGCCGAGGCAACAACATCAACCACTTCAACAGCAGCAGCAGCAG
CAGCAGCAGGTTAGAGAAGGAAGTGGAGAAGGGGGAAGGGGAGGGGGAAT
GGTACAACCACAACAGCAGCTAGAGCTGATGCAGCAGCATATCCTCCAAC
AGCAGCAAATATTGCAGCAGCACCAGCAGCAATACCAAGCGATGGTCTAC
CAACAGCAGCTTCTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCGCTATCAACAACAACAACTACAGCAGCAGCAAGATCAAAAAGGAG
AACGAGGGCCAGGACGAGGAGGGGGGGTGGGGGGGCAGCCGCGGGCCCTT
CAGCCCTTGTACAGACGCCAATGGGGCTCATGA
back to top

Coding sequence (CDS) from alignment at chr8:755416..756498-

>NO08G02690.1 ID=NO08G02690.1|Name=NO08G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr8:755416..756498- (Nannochloropsis oceanica)
ATGGAGCCTCCCTCTTTCCTTGCAGCATCCGCTGCATCAGCGACATCAGA
AGGACCACAGCCTCTGTCGCCGCCGCCGCAGCAGCAACCGCAGCAACCGA
AGGTCAAGCAGCGACAACCACGGCAGGTCCTGCAGCAGAGGCAGCCCGTG
GCGCTCTCCGTCATGACAATCGTCCTAGATCAGAACGAGGACTTGCTTCT
TGCCATCGCGGAAAGCCAGCGTCTGGGCAAGAATGTGCGGGCGGCTAAGT
ACCAACGGCAGCTCCAGGAAAACCTTTTGGTCTTGACTCAGCTATGTGAC
AGTCAAGAGTATCACCATAAGTCGTTTCGGGACCTGGCCATGAAGAAATT
ACCCAAGCAAAAAAGAGCAACTGTTAAGGAAACATCAGCATCTGAAATTG
GTCAAGGGATCGGGCAAACAATCTCGAATCAGCCGCAGCCGCTCGCCGTT
CCTTCGCAGCAGCAATTAATACAGGCCCAACCGAACAATGCAGGGGACCT
ATCGGCTGCGACAAGCAATGCTCTTGTGCCTGCGCAGCAAGAAGGAGGAG
AAAGAGGAGGGGAGGGAAGTGGAAAGGGAGGAGGAAGTGGAGAGGGAGAC
GGGAGGGAGGGGATAATCTATCAACCTCTGTCACAGCAACAACAACCCCA
ACAATTGCAGCAGCAGCTCATGATGATGCCTCAGCACGCGCGATTTCAAT
CGATGCAGCCGAGGCAACAACATCAACCACTTCAACAGCAGCAGCAGCAG
CAGCAGCAGGTTAGAGAAGGAAGTGGAGAAGGGGGAAGGGGAGGGGGAAT
GGTACAACCACAACAGCAGCTAGAGCTGATGCAGCAGCATATCCTCCAAC
AGCAGCAAATATTGCAGCAGCACCAGCAGCAATACCAAGCGATGGTCTAC
CAACAGCAGCTTCTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCGCTATCAACAACAACAACTACAGCAGCAGCAAGATCAAAAAGGAG
AACGAGGGCCAGGACGAGGAGGGGGGGTGGGGGGGCAGCCGCGGGCCCTT
CAGCCCTTGTACAGACGCCAATGGGGCTCATGA
back to top
Synonyms
Publications