NO08G02650.1, NO08G02650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02650.1
Unique NameNO08G02650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2529
Alignment locationchr8:743824..746714 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:743824..746714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02650.1 vs.
Match: EWM26609.1 (Kelch-type beta propeller [Nannochloropsis gaditana])

HSP 1 Score: 629.8 bits (1623), Expect = 9.400e-177
Identity = 312/428 (72.90%), Postives = 355/428 (82.94%), Query Frame = 0 
Query:  216 MHTSDFFPHRRQIIVFRGGDGKEYLNDLHGLNVDTLQWERLECTGIKPEARANHCSAVMDHQLFIFGGWNGQTRLNDVHVLDTNTLEWRRLEPRGVPPPPRAGMTLTRIRDRLYLFGGSGPAAKCFDDLQILDLKEMCWTEIISRSKTGDNINGHCASNFILRGGGKGDMPSPSSSSTSTSLSWSSSSNSSPSCQPLAPVSGGNGGNPNDEHVTTESVSIHGEGPGPRAGHSATILDRRLVIFGGSHGSKYLGEMYLLDTDPVPSPLVSSPSCVQLVGSYLRQFFDREDFSDVTFIVEGKPVQAHRLVLSIGSDRFRAMFSSGFRESSERLIHIEEGSYEVFRLMMEYIYTGEPPYVLQIGRQTDPMMAAELLALADQYMLDHLKQLCEARLAEEVREDTVESILELAERSNSGQLRAVCRHFTRNRE 644
            MHTSD+ PHRRQI+VFRGGDG+EYLNDLHGL+VDT +WERL C+G  PEARANHCSAV++  LFIFGGWNGQTRLNDVHVLDT+T+ W RLEPRGV PPPRAGMTLTRIRDRLYLFGGSGPAAKCFDDLQILDLKEMCWTEI SRSK+G    G  +   +  G G G+  +   +  +++   S    S           GGN  NPNDEHVT ESVSI GEGPGPRAGHSAT+LDRRLVIFGGSHGS+YLGEM++LDTDPVP PLV +PSC QL+GS+LR + DREDFSDVT IVE +PV+AHRLVLSI SDRF+AMFSSGFRESSER + +E  S+EVF+LM+ YIYTGEPP  L +G Q+DP++AAELLALADQYMLDHLKQLCEARL EEVREDTV+SI++LAERSNS QLRAVCRHF RNR+
Sbjct:    1 MHTSDYLPHRRQILVFRGGDGREYLNDLHGLHVDTGRWERLRCSGTIPEARANHCSAVLNRHLFIFGGWNGQTRLNDVHVLDTDTMVWSRLEPRGVAPPPRAGMTLTRIRDRLYLFGGSGPAAKCFDDLQILDLKEMCWTEITSRSKSG---GGGSSGTALSSGSGVGEERAIPGAHLASAAENSGLERSRGGGW------GGNQANPNDEHVT-ESVSIWGEGPGPRAGHSATVLDRRLVIFGGSHGSRYLGEMFVLDTDPVPEPLVIAPSCAQLIGSHLRHYLDREDFSDVTLIVEKRPVRAHRLVLSIASDRFKAMFSSGFRESSEREVEVEGCSFEVFKLMLGYIYTGEPPSALLVGSQSDPILAAELLALADQYMLDHLKQLCEARLTEEVREDTVDSIMDLAERSNSWQLRAVCRHFVRNRD 418
The following BLAST results are available for this feature:
BLAST of NO08G02650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26609.19.400e-17772.90Kelch-type beta propeller [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02650NO08G02650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02650.1NO08G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02650.1.cds1NO08G02650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02650.1.cds2NO08G02650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02650.1.cds3NO08G02650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02650.1 ID=NO08G02650.1|Name=NO08G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp
GTGCTCGCTTATTCTTGAATTGGGTCGATTCTTTTGTGAGATCGGTGCGG
GTAGTGATTAAGCCTTTAATGTATCCAGATACTTTTTGTTTCATTCAGAT
GAGCATACGTTTGCCCATCAACTGGTGAGACTTGTGTGGGGTAATTGTGT
CTTTCCGGGGGAGGGGAGAATTATGTGTTGGGTCGTGCGGGGAGGTTATG
CCGAGGGCCGCCTCTTACCATGGAAAATGAATAAAGCAATGCATGGCTTG
CCCTTCTACTCCCTTCCTGCTGCCACCAAAAACGCCTAACCAGCACGACA
CGGCGGGCAGGAGGAACAGAGCGGGATGTTATCAATTTCGTCAAGCATCG
GATCGTGATGATGATAACGTCGGCTTCTTTCTTGATCTCTACCACTCCCA
CACAGCTCGACCTCACTCACTTACAAGCATCAGCACGACCGCAATACCCT
TGTGCCTCTCCTCTGCGCCTTACTGACAGTTTACCGTTCCCCTACATTCA
ACGAAACCTAGGCACACCACCTTACTCGCTTAAAGCAATCTGCTTCTTCG
CTCCTGCAAAATCGACAACTGCACAAGAAGTACACAAACCAGGCTCTCCC
TGGCAGGACCGGTCTTGGCCCTCATACCTCAGCCACACACTTACCATGTT
GAAGTGGACGAAGCCGCAGGGCATATCTGGCATGCCGACTTTAAAAAACC
ACACGGCAACGCTCGTTGACAATAGGGTATTTGTGTTCGGGGGTTACGAC
GGGCAGAAGAATCATTCGACGCTGCACGTATTTGACCACACGACTGGGCG
CTGGATCTGCCAAAACGTCGCGGGCAAGGCACCCCCAGGGCGCAACGGAC
ACACAGCCACACTGGCAGATGGTAAACTCTTTATAATTGGTGGTTGGTTG
GGCTCCGGTCCCCTTGCAGCTAGCGACATGCATTATATTGACATAGCAAA
CATGCAGTGGGTAGAGCCTCCTATCCTTGGCGAACCCCCTGGCCCATGCA
ACATGCACACGAGTGATTTCTTCCCCCACCGTCGTCAGATTATTGTTTTC
AGAGGAGGCGATGGAAAGGAATATCTGAATGATTTGCATGGCTTGAACGT
CGATACCCTGCAATGGGAGCGTTTGGAGTGCACGGGTATTAAGCCCGAGG
CGCGTGCCAACCACTGCTCGGCAGTGATGGATCATCAGCTCTTCATTTTC
GGTGGTTGGAACGGACAAACCCGCCTTAACGACGTCCATGTTCTTGACAC
CAATACGTTGGAGTGGCGGCGTCTCGAGCCGCGGGGGGTGCCTCCCCCGC
CACGGGCAGGCATGACGTTGACACGGATTCGTGATCGACTGTATTTGTTT
GGGGGCTCTGGCCCGGCGGCGAAGTGCTTTGACGACCTCCAGATATTGGA
TTTAAAGGAGATGTGCTGGACGGAGATAATCTCTCGCTCTAAGACAGGGG
ACAACATAAACGGCCATTGCGCGTCCAATTTTATCCTGAGGGGCGGCGGA
AAGGGGGACATGCCATCCCCTTCCTCCTCAAGTACAAGTACATCTCTCTC
GTGGTCCTCCTCCTCCAACTCCTCTCCCTCTTGCCAACCATTAGCACCAG
TAAGCGGTGGGAATGGTGGGAACCCTAACGATGAGCACGTGACGACGGAG
TCTGTGTCTATCCATGGAGAGGGCCCCGGGCCGAGGGCGGGACACAGTGC
CACCATTCTCGATCGACGCCTTGTCATCTTCGGCGGGTCGCACGGTTCGA
AATATCTTGGAGAAATGTATCTTTTGGACACGGACCCCGTTCCCTCACCC
TTGGTGAGTTCTCCATCGTGCGTGCAGTTGGTCGGGAGTTATTTAAGGCA
GTTTTTCGACCGAGAGGATTTTTCGGATGTGACGTTTATAGTAGAAGGTA
AACCCGTGCAGGCACACCGCTTAGTGTTGAGTATTGGGAGTGATCGGTTT
CGGGCGATGTTTTCGTCGGGCTTCAGGGAGTCCTCGGAGCGGTTGATTCA
CATCGAGGAAGGGTCTTACGAGGTGTTCAGATTGATGATGGAGTACATAT
ACACAGGGGAGCCACCTTACGTTTTGCAAATAGGAAGACAGACAGATCCA
ATGATGGCCGCGGAGCTCTTGGCCTTGGCAGATCAGTACATGCTTGACCA
CTTGAAGCAATTGTGCGAGGCGCGCTTGGCGGAGGAAGTGAGGGAGGACA
CGGTGGAGTCGATTTTAGAGCTGGCGGAACGGAGCAACTCGGGGCAGTTG
CGGGCGGTATGTAGACATTTTACGCGAAATCGGGAGATATGATATAGCTT
CCTCGTCAGGGGCGGAGGGTAGGCATGGGTGATGGGTCAGGACTGAATGC
AAGGAAATTGATGTAGGTAGAGGTAGGGGGGCGTAGGTTTTGCAAGAGAT
GTAAATCGCCGGGAGGGAGAAAGAGGAAAGGCAATTTGGGATGGGCATGA
TTGTCAATAAACTGCACGCAATACCTTTGCACTGCAAGCAAACTGAGCAA
AGAACGCAAGTGTTCATACAGTCGGAGGT
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protein sequence of NO08G02650.1

>NO08G02650.1-protein ID=NO08G02650.1-protein|Name=NO08G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MMITSASFLISTTPTQLDLTHLQASARPQYPCASPLRLTDSLPFPYIQRN
LGTPPYSLKAICFFAPAKSTTAQEVHKPGSPWQDRSWPSYLSHTLTMLKW
TKPQGISGMPTLKNHTATLVDNRVFVFGGYDGQKNHSTLHVFDHTTGRWI
CQNVAGKAPPGRNGHTATLADGKLFIIGGWLGSGPLAASDMHYIDIANMQ
WVEPPILGEPPGPCNMHTSDFFPHRRQIIVFRGGDGKEYLNDLHGLNVDT
LQWERLECTGIKPEARANHCSAVMDHQLFIFGGWNGQTRLNDVHVLDTNT
LEWRRLEPRGVPPPPRAGMTLTRIRDRLYLFGGSGPAAKCFDDLQILDLK
EMCWTEIISRSKTGDNINGHCASNFILRGGGKGDMPSPSSSSTSTSLSWS
SSSNSSPSCQPLAPVSGGNGGNPNDEHVTTESVSIHGEGPGPRAGHSATI
LDRRLVIFGGSHGSKYLGEMYLLDTDPVPSPLVSSPSCVQLVGSYLRQFF
DREDFSDVTFIVEGKPVQAHRLVLSIGSDRFRAMFSSGFRESSERLIHIE
EGSYEVFRLMMEYIYTGEPPYVLQIGRQTDPMMAAELLALADQYMLDHLK
QLCEARLAEEVREDTVESILELAERSNSGQLRAVCRHFTRNREI*
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mRNA from alignment at chr8:743824..746714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02650.1 ID=NO08G02650.1|Name=NO08G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2891bp|location=Sequence derived from alignment at chr8:743824..746714+ (Nannochloropsis oceanica)
GTGCTCGCTTATTCTTGAATTGGGTCGATTCTTTTGTGAGATCGGTGCGG
GTAGTGATTAAGCCTTTAATGTATCCAGATACTTTTTGTTTCATTCAGAT
GAGCATACGTTTGCCCATCAACTGGTGAGACTTGTGTGGGGTAATTGTGT
CTTTCCGGGGGAGGGGAGAATTATGTGTTGGGTCGTGCGGGGAGGTTATG
CCGAGGGCCGCCTCTTACCATGGAAAATGAATAAAGCAATGCATGGCTTG
CCCTTCTACTCCCTTCCTGCTGCCACCAAAAACGCCTAACCAGCACGACA
CGGCGGGCAGGAGGAACAGAGCGGGATGTTATCAATTTCGTCAAGCATCG
GATCGTGATGATGATAACGTCGGCTTCTTTCTTGATCTCTACCACTCCCA
CACAGCTCGACCTCACTCACTTACAAGCATCAGCACGACCGCAATACCCT
TGTGCCTCTCCTCTGCGCCTTACTGACAGTTTACCGTTCCCCTACATTCA
ACGAAACCTAGGCACACCACCTTACTCGCTTAAAGCAATCTGCTTCTTCG
CTCCTGCAAAATCGACAACTGCACAAGAAGTACACAAACCAGGCTCTCCC
TGGCAGGACCGGTCTTGGCCCTCATACCTCAGCCACACACTTACCATGTT
GAAGTGGACGAAGCCGCAGGGCATATCTGGCATGCCGACTTTAAAAAACC
ACACGGCAACGCTCGTTGACAATAGGGTAAGGAAGCTCGACACGCATGTG
CCAGGGGAAGGGAGGAGGTGACGAAGAAAGCCTTCCGCGAACCACTTCCA
CACACATACTCAATATTGCATACATAAATTCCCGCATAGTACAGGTATTT
GTGTTCGGGGGTTACGACGGGCAGAAGAATCATTCGACGCTGCACGTATT
TGACCACACGACTGGGCGCTGGATCTGCCAAAACGTCGCGGGCAAGGCAC
CCCCAGGGCGCAACGGACACACAGCCACACTGGCAGATGGTAAACTCTTT
ATAATTGGTGGTTGGTTGGGCTCCGGTCCCCTTGCAGCTAGCGACATGCA
TTATATTGACATAGCAAACATGCAGTGGGTAGAGCCTCCTATCCTTGGCG
AACCCCCTGGCCCATGCAACATGCACACGAGTGATTTCTTCCCCCACCGT
CGTCAGATTATTGTTTTCAGAGGAGGCGATGGAAAGGAATATCTGAATGA
TTTGCATGGCTTGAACGTCGATACCCTGCAATGGGAGCGTTTGGAGTGCA
CGGGTATTAAGCCCGAGGCGCGTGCCAACCACTGCTCGGCAGTGATGGAT
CATCAGCTCTTCATTTTCGGTGGTTGGAACGGACAAACCCGCCTTAACGA
CGTCCATGTTCTTGACACCAATACGTTGGAGTGGCGGCGTCTCGAGCCGC
GGGGGGTGCCTCCCCCGCCACGGGCAGGCATGACGTTGACACGGATTCGT
GATCGACTGTATTTGTTTGGGGGCTCTGGCCCGGCGGCGAAGTGCTTTGA
CGACCTCCAGATATTGGATTTAAAGGAGATGTGCTGGTAGGTACTTAAAA
AATGGAAGGAAGGGGCAGAAGGGTATGTCTTTGTGGAGGGAAAGGAAAGG
GTGGAACGAGCATGTCTTTGTTATTTTCCGCCCTGACCCCATCTTTTGGA
GAGGAAAGGCGGAAAGGCTCTAAATGTGGTTCATGGCCGCCCCTTCCTTT
TTTCGTCTCCATTCTGTGCTTCCCCACCCTGACTCACACCGCGATGCTCC
TTCGATTTCATTAATTTAACAATTTAATAGGACGGAGATAATCTCTCGCT
CTAAGACAGGGGACAACATAAACGGCCATTGCGCGTCCAATTTTATCCTG
AGGGGCGGCGGAAAGGGGGACATGCCATCCCCTTCCTCCTCAAGTACAAG
TACATCTCTCTCGTGGTCCTCCTCCTCCAACTCCTCTCCCTCTTGCCAAC
CATTAGCACCAGTAAGCGGTGGGAATGGTGGGAACCCTAACGATGAGCAC
GTGACGACGGAGTCTGTGTCTATCCATGGAGAGGGCCCCGGGCCGAGGGC
GGGACACAGTGCCACCATTCTCGATCGACGCCTTGTCATCTTCGGCGGGT
CGCACGGTTCGAAATATCTTGGAGAAATGTATCTTTTGGACACGGACCCC
GTTCCCTCACCCTTGGTGAGTTCTCCATCGTGCGTGCAGTTGGTCGGGAG
TTATTTAAGGCAGTTTTTCGACCGAGAGGATTTTTCGGATGTGACGTTTA
TAGTAGAAGGTAAACCCGTGCAGGCACACCGCTTAGTGTTGAGTATTGGG
AGTGATCGGTTTCGGGCGATGTTTTCGTCGGGCTTCAGGGAGTCCTCGGA
GCGGTTGATTCACATCGAGGAAGGGTCTTACGAGGTGTTCAGATTGATGA
TGGAGTACATATACACAGGGGAGCCACCTTACGTTTTGCAAATAGGAAGA
CAGACAGATCCAATGATGGCCGCGGAGCTCTTGGCCTTGGCAGATCAGTA
CATGCTTGACCACTTGAAGCAATTGTGCGAGGCGCGCTTGGCGGAGGAAG
TGAGGGAGGACACGGTGGAGTCGATTTTAGAGCTGGCGGAACGGAGCAAC
TCGGGGCAGTTGCGGGCGGTATGTAGACATTTTACGCGAAATCGGGAGAT
ATGATATAGCTTCCTCGTCAGGGGCGGAGGGTAGGCATGGGTGATGGGTC
AGGACTGAATGCAAGGAAATTGATGTAGGTAGAGGTAGGGGGGCGTAGGT
TTTGCAAGAGATGTAAATCGCCGGGAGGGAGAAAGAGGAAAGGCAATTTG
GGATGGGCATGATTGTCAATAAACTGCACGCAATACCTTTGCACTGCAAG
CAAACTGAGCAAAGAACGCAAGTGTTCATACAGTCGGAGGT
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Coding sequence (CDS) from alignment at chr8:743824..746714+

>NO08G02650.1 ID=NO08G02650.1|Name=NO08G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at chr8:743824..746714+ (Nannochloropsis oceanica)
ATGATGATAACGTCGGCTTCTTTCTTGATCTCTACCACTCCCACACAGCT
CGACCTCACTCACTTACAAGCATCAGCACGACCGCAATACCCTTGTGCCT
CTCCTCTGCGCCTTACTGACAGTTTACCGTTCCCCTACATTCAACGAAAC
CTAGGCACACCACCTTACTCGCTTAAAGCAATCTGCTTCTTCGCTCCTGC
AAAATCGACAACTGCACAAGAAGTACACAAACCAGGCTCTCCCTGGCAGG
ACCGGTCTTGGCCCTCATACCTCAGCCACACACTTACCATGTTGAAGTGG
ACGAAGCCGCAGGGCATATCTGGCATGCCGACTTTAAAAAACCACACGGC
AACGCTCGTTGACAATAGGGTATTTGTGTTCGGGGGTTACGACGGGCAGA
AGAATCATTCGACGCTGCACGTATTTGACCACACGACTGGGCGCTGGATC
TGCCAAAACGTCGCGGGCAAGGCACCCCCAGGGCGCAACGGACACACAGC
CACACTGGCAGATGGTAAACTCTTTATAATTGGTGGTTGGTTGGGCTCCG
GTCCCCTTGCAGCTAGCGACATGCATTATATTGACATAGCAAACATGCAG
TGGGTAGAGCCTCCTATCCTTGGCGAACCCCCTGGCCCATGCAACATGCA
CACGAGTGATTTCTTCCCCCACCGTCGTCAGATTATTGTTTTCAGAGGAG
GCGATGGAAAGGAATATCTGAATGATTTGCATGGCTTGAACGTCGATACC
CTGCAATGGGAGCGTTTGGAGTGCACGGGTATTAAGCCCGAGGCGCGTGC
CAACCACTGCTCGGCAGTGATGGATCATCAGCTCTTCATTTTCGGTGGTT
GGAACGGACAAACCCGCCTTAACGACGTCCATGTTCTTGACACCAATACG
TTGGAGTGGCGGCGTCTCGAGCCGCGGGGGGTGCCTCCCCCGCCACGGGC
AGGCATGACGTTGACACGGATTCGTGATCGACTGTATTTGTTTGGGGGCT
CTGGCCCGGCGGCGAAGTGCTTTGACGACCTCCAGATATTGGATTTAAAG
GAGATGTGCTGGACGGAGATAATCTCTCGCTCTAAGACAGGGGACAACAT
AAACGGCCATTGCGCGTCCAATTTTATCCTGAGGGGCGGCGGAAAGGGGG
ACATGCCATCCCCTTCCTCCTCAAGTACAAGTACATCTCTCTCGTGGTCC
TCCTCCTCCAACTCCTCTCCCTCTTGCCAACCATTAGCACCAGTAAGCGG
TGGGAATGGTGGGAACCCTAACGATGAGCACGTGACGACGGAGTCTGTGT
CTATCCATGGAGAGGGCCCCGGGCCGAGGGCGGGACACAGTGCCACCATT
CTCGATCGACGCCTTGTCATCTTCGGCGGGTCGCACGGTTCGAAATATCT
TGGAGAAATGTATCTTTTGGACACGGACCCCGTTCCCTCACCCTTGGTGA
GTTCTCCATCGTGCGTGCAGTTGGTCGGGAGTTATTTAAGGCAGTTTTTC
GACCGAGAGGATTTTTCGGATGTGACGTTTATAGTAGAAGGTAAACCCGT
GCAGGCACACCGCTTAGTGTTGAGTATTGGGAGTGATCGGTTTCGGGCGA
TGTTTTCGTCGGGCTTCAGGGAGTCCTCGGAGCGGTTGATTCACATCGAG
GAAGGGTCTTACGAGGTGTTCAGATTGATGATGGAGTACATATACACAGG
GGAGCCACCTTACGTTTTGCAAATAGGAAGACAGACAGATCCAATGATGG
CCGCGGAGCTCTTGGCCTTGGCAGATCAGTACATGCTTGACCACTTGAAG
CAATTGTGCGAGGCGCGCTTGGCGGAGGAAGTGAGGGAGGACACGGTGGA
GTCGATTTTAGAGCTGGCGGAACGGAGCAACTCGGGGCAGTTGCGGGCGG
TATGTAGACATTTTACGCGAAATCGGGAGATATGA
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Synonyms
Publications