NO08G02640.1, NO08G02640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02640.1
Unique NameNO08G02640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1056
Alignment locationchr8:741851..743718 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:741851..743718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02640.1 vs.
Match: OUX66820.1 (enoyl-ACP reductase [Oceanospirillaceae bacterium TMED276])

HSP 1 Score: 423.3 bits (1087), Expect = 7.300e-115
Identity = 216/344 (62.79%), Postives = 270/344 (78.49%), Query Frame = 0
Query:    1 MQTRVTRLFKIQYPIVLPGMSWISKPKLVAAVCNAGGLGILASGPLSAVETAVAIKEIRSLTDKPFGIGTTLMMPGAKENATVALEEEVPVINYSLGKGDWLVQRAHAYGGKVIATVTSVKHAKSAKSSGADALLVTGHEAAAHGGDVTSLVLIPSIAANVPDLPLIAAGGFGDGRGLLAALSLGADAVAMGTRFACTEESPLHENVKKAITSDGQTESSTVYSKNIDGIWARVMKTPFAAEAASKRANPLVVAIEALKQAKRFGVNPLKVLPGLFMEPDKIYMLAQFGGATRKFELATIEGDLEKGIQFVGQVQGLIHDVPTVQALVTRVLAEAAGIHAKQHQ 345
            M+TR+T L  I+ P++LPGMSWIS P+LVAAV NAGGLGILASGPL+  ET  AI+EIR LTDKPFG+G TL+MPGAKENA +ALEE+VPVIN+SLGKGDWLV++AH YGGKVIATV S KHA SA+S GADALLVTGHEAAAHGGDVTSLVL+PSIA+ V D+P+IA GGF D RGL+AALSLGA+AVAMG+RFA + +SPLH +VK+ +    ++E  T+YSKN DG+WARVMKTP + +   +  N ++  IEA K AK       K++ G+ +  DKI +LA FG +  + + ATI GDL+KG+QF+GQ QGLI D+PTVQ LV R+LA+A  +H   ++
Sbjct:    1 MKTRITELLGIEAPLILPGMSWISTPQLVAAVSNAGGLGILASGPLTPEETRAAIREIRELTDKPFGVGVTLLMPGAKENAMIALEEKVPVINFSLGKGDWLVKKAHEYGGKVIATVVSEKHALSAQSIGADALLVTGHEAAAHGGDVTSLVLVPSIASKV-DIPVIATGGFADARGLMAALSLGAEAVAMGSRFATSADSPLHNHVKETVIK--KSEQETIYSKNFDGLWARVMKTPRSVKETKRPMNLIIAGIEATKAAKIVKQPVWKIMLGMMVMLDKIKLLAYFGASVPRLQAATINGDLDKGVQFIGQTQGLIEDIPTVQELVDRILADAKAMHESNNR 341          
The following BLAST results are available for this feature:
BLAST of NO08G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OUX66820.17.300e-11562.79enoyl-ACP reductase [Oceanospirillaceae bacterium ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02640NO08G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02640.1NO08G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02640.1.cds1NO08G02640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02640.1.cds2NO08G02640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02640.1.cds3NO08G02640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02640.1.cds4NO08G02640.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02640.1 ID=NO08G02640.1|Name=NO08G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ATGCAGACGCGCGTCACCCGGCTCTTTAAGATCCAATACCCAATTGTCCT
CCCAGGCATGTCGTGGATCTCAAAGCCTAAACTAGTGGCTGCCGTGTGCA
ATGCGGGCGGGCTAGGCATCCTCGCCTCAGGGCCTCTCTCGGCCGTCGAA
ACGGCTGTAGCCATCAAGGAGATCCGCAGCCTCACAGACAAGCCCTTTGG
GATTGGCACCACCCTTATGATGCCGGGCGCCAAGGAAAACGCGACAGTCG
CCTTGGAAGAAGAGGTACCCGTCATCAATTACAGCCTGGGCAAGGGAGAC
TGGCTGGTGCAAAGAGCCCACGCGTACGGTGGCAAGGTCATCGCAACCGT
CACTTCGGTGAAGCATGCCAAGTCGGCGAAAAGCAGCGGTGCGGATGCCC
TCCTTGTAACGGGACACGAAGCCGCTGCACATGGGGGGGACGTGACCTCC
TTGGTATTAATTCCATCCATCGCGGCCAATGTACCGGACCTGCCGTTGAT
CGCTGCAGGGGGATTCGGAGATGGAAGAGGCTTGCTGGCGGCTTTGTCCT
TGGGAGCGGATGCAGTGGCGATGGGCACCCGATTTGCTTGCACGGAGGAG
AGTCCATTGCATGAAAACGTGAAGAAGGCCATTACAAGTGATGGTCAAAC
GGAAAGTAGCACGGTTTATTCCAAAAATATCGATGGGATATGGGCAAGGG
TGATGAAGACGCCTTTCGCTGCAGAGGCGGCAAGTAAGCGGGCGAACCCT
CTCGTTGTGGCGATCGAGGCTTTAAAGCAGGCGAAACGGTTCGGTGTCAA
CCCACTCAAGGTTTTGCCGGGCCTGTTTATGGAGCCAGATAAAATTTACA
TGCTGGCGCAGTTTGGAGGGGCGACGCGTAAGTTTGAGCTGGCGACGATT
GAAGGTGATTTGGAAAAGGGCATTCAATTTGTGGGGCAGGTGCAAGGTCT
GATTCACGATGTGCCCACGGTGCAAGCATTGGTAACACGGGTCCTGGCCG
AGGCAGCGGGAATTCATGCCAAACAGCACCAGGAATTGTTTGGAAGGAGC
GGGTGA
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protein sequence of NO08G02640.1

>NO08G02640.1-protein ID=NO08G02640.1-protein|Name=NO08G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MQTRVTRLFKIQYPIVLPGMSWISKPKLVAAVCNAGGLGILASGPLSAVE
TAVAIKEIRSLTDKPFGIGTTLMMPGAKENATVALEEEVPVINYSLGKGD
WLVQRAHAYGGKVIATVTSVKHAKSAKSSGADALLVTGHEAAAHGGDVTS
LVLIPSIAANVPDLPLIAAGGFGDGRGLLAALSLGADAVAMGTRFACTEE
SPLHENVKKAITSDGQTESSTVYSKNIDGIWARVMKTPFAAEAASKRANP
LVVAIEALKQAKRFGVNPLKVLPGLFMEPDKIYMLAQFGGATRKFELATI
EGDLEKGIQFVGQVQGLIHDVPTVQALVTRVLAEAAGIHAKQHQELFGRS
G*
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mRNA from alignment at chr8:741851..743718+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02640.1 ID=NO08G02640.1|Name=NO08G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp|location=Sequence derived from alignment at chr8:741851..743718+ (Nannochloropsis oceanica)
ATGCAGACGCGCGTCACCCGGCTCTTTAAGATCCAATACCCAATTGTCCT CCCAGGCATGTCGTGGATCTCAAAGCCTAAACTAGTGGCTGCCGTGTGCA ATGCGGGCGGGCTAGGCATCCTCGCCTCAGGGCCTCTCTCGGCCGTCGAA ACGGCTGTAGCCATCAAGGAGATCCGCAGCCTCACAGACAAGCCCTTTGG GATTGGCACCACCCTTATGATGCCGGTAGGTTTGTTGGCACGAGCGCGAC ACTACTCTTTCAGTCTATCCCTTTCTCCCTTCGACCTCCTTCGTCGGCCC CTCATCCCTTCCTTCAAGTCTCCATGACTCCATGACGATGTTCTCCTACA AGTCCTTGGAAGGGTTTTGCACTGTATACCCTTACCCTGCTGTTTTTTGT TGTTTGTTTACCAGCTTTCGAATATCCTCTCTTTCCTTCAAAACAAAGTC AACATACTTTGACGACAATGTCCTCCCTCATGTGCTCACAAAATTTCACA TCCTGCCACTGCTCCTTCCTCTCTCCCAATCCATCATAATGATAGGGCGC CAAGGAAAACGCGACAGTCGCCTTGGAAGAAGAGGTACCCGTCATCAATT ACAGCCTGGGCAAGGGAGACTGGCTGGTGCAAAGAGCCCACGCGTACGGT GGCAAGGTCATCGCAACCGTCACTTCGGTGAAGCATGGTGCGCCTTCCGT GTTGGAGGGGGTGGGAGAGAGGGAAGGGTGACAGAAGCAACTATATTTCT TTCCCCACAACTTCATCCCCGATTTCAATATACCCTTTTCAGGAGTTTCA AGTCTTATTTGATCTCTTGCTCGATTTTCATGCATCGATCACTCCACGTA CTCATCCTCTCCTTCCCCCTCCCTCCCTTTTCCCCAACAGCCAAGTCGGC GAAAAGCAGCGGTGCGGATGCCCTCCTTGTAACGGGACACGAAGCCGCTG CACATGGGGGGGACGTGACCTCCTTGGTATTAATTCCATCCATCGCGGCC AATGTACCGGACCTGCCGTTGATCGCTGCAGGGGGATTCGGAGATGGAAG AGGCTTGCTGGCGGCTTTGTCCTTGGGAGCGGATGCAGTGGCGATGGGCA CCCGATTTGCTTGCACGGAGGAGAGTCCATTGCATGAAAACGTGAAGAAG GCCATTACAAGTGATGGTCAAACGGAAAGTAGCACGGTTTATTCCAAAAA TATCGATGGGATATGGGCAAGGGTGATGAAGACGCCTTTCGCTGCAGAGG CGGCAAGTAAGCGGGCGAACCCTCTCGTTGTGGCGATCGAGGCTTTAAAG CAGGCGAAACGGTTCGGTGTCAACCCACTCAAGGTTTTGCCGGGCCTGTT TATGGAGCCAGATAAAATTTACATGCTGGCGCAGTTTGGAGGGGCGACGC GTAAGTTTGAGCTGGCGACGGTGAGTGGGGATGGAGAGGTGGGGAGGGGG AAGAGGGAGTGAGGGGTGGATGTGGGTGGGTGGATAGAGATGGGTTGGAG CATGACATGCAACATAATGTAAGCTGGCGAGCTAGACGATGTGTACCCTC TGTTACAGTGAGAGAGGAGGTATTGAGGAGGAGAAGAGTAAGTTTTAGGA AGAAATACGTTCCTCATCCCCCCCTCATTTCCTCTTCATTTTTCAGATCA ATTTTTACTAAGCGATCCCTCACCATCTCACTCTATCTCCTCCCTCCCCC CCTAAATAGATTGAAGGTGATTTGGAAAAGGGCATTCAATTTGTGGGGCA GGTGCAAGGTCTGATTCACGATGTGCCCACGGTGCAAGCATTGGTAACAC GGGTCCTGGCCGAGGCAGCGGGAATTCATGCCAAACAGCACCAGGAATTG TTTGGAAGGAGCGGGTGA
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Coding sequence (CDS) from alignment at chr8:741851..743718+

>NO08G02640.1 ID=NO08G02640.1|Name=NO08G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr8:741851..743718+ (Nannochloropsis oceanica)
ATGCAGACGCGCGTCACCCGGCTCTTTAAGATCCAATACCCAATTGTCCT
CCCAGGCATGTCGTGGATCTCAAAGCCTAAACTAGTGGCTGCCGTGTGCA
ATGCGGGCGGGCTAGGCATCCTCGCCTCAGGGCCTCTCTCGGCCGTCGAA
ACGGCTGTAGCCATCAAGGAGATCCGCAGCCTCACAGACAAGCCCTTTGG
GATTGGCACCACCCTTATGATGCCGGGCGCCAAGGAAAACGCGACAGTCG
CCTTGGAAGAAGAGGTACCCGTCATCAATTACAGCCTGGGCAAGGGAGAC
TGGCTGGTGCAAAGAGCCCACGCGTACGGTGGCAAGGTCATCGCAACCGT
CACTTCGGTGAAGCATGCCAAGTCGGCGAAAAGCAGCGGTGCGGATGCCC
TCCTTGTAACGGGACACGAAGCCGCTGCACATGGGGGGGACGTGACCTCC
TTGGTATTAATTCCATCCATCGCGGCCAATGTACCGGACCTGCCGTTGAT
CGCTGCAGGGGGATTCGGAGATGGAAGAGGCTTGCTGGCGGCTTTGTCCT
TGGGAGCGGATGCAGTGGCGATGGGCACCCGATTTGCTTGCACGGAGGAG
AGTCCATTGCATGAAAACGTGAAGAAGGCCATTACAAGTGATGGTCAAAC
GGAAAGTAGCACGGTTTATTCCAAAAATATCGATGGGATATGGGCAAGGG
TGATGAAGACGCCTTTCGCTGCAGAGGCGGCAAGTAAGCGGGCGAACCCT
CTCGTTGTGGCGATCGAGGCTTTAAAGCAGGCGAAACGGTTCGGTGTCAA
CCCACTCAAGGTTTTGCCGGGCCTGTTTATGGAGCCAGATAAAATTTACA
TGCTGGCGCAGTTTGGAGGGGCGACGCGTAAGTTTGAGCTGGCGACGATT
GAAGGTGATTTGGAAAAGGGCATTCAATTTGTGGGGCAGGTGCAAGGTCT
GATTCACGATGTGCCCACGGTGCAAGCATTGGTAACACGGGTCCTGGCCG
AGGCAGCGGGAATTCATGCCAAACAGCACCAGGAATTGTTTGGAAGGAGC
GGGTGA
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Synonyms
Publications