NO08G02630.1, NO08G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02630.1
Unique NameNO08G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr8:737339..740123 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:737339..740123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G02630.1 vs.
Match: EWM26637.1 (protein mam3 [Nannochloropsis gaditana])

HSP 1 Score: 774.2 bits (1998), Expect = 2.900e-220
Identity = 429/570 (75.26%), Postives = 468/570 (82.11%), Query Frame = 0 
Query:   43 MDFGEDASGYANMDAANFWYQLVGAVVCVLCAAFAAGLTVGLMSLDPLELEVKRRVGTPDERKHAEKICPLIARHHRLLVTLLLFNSIANEALPIFLSGLVPGYVAVLLSVTAILIFGEIIPSALFTGPNQIVMAARFSGCVLFLMGLFWPIAYPIAHVLDRWLGHNSFKRYTREELSTLVDLQREAGTIKHRRPPGTPGGGVGTGIYAHSAKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPMDEVYTLCEDDVLDENMLCEIMACGFSRIPVHSARGRQDIRGFLLVKRLIVLDPADRRPVRTLPLRQPIVVGPTGSLLELINVFQEGRSHMAIVSSCPDLTRQALRTGKPLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETLKRVRRKVRRLRQQQQEELESGHHKA------ISVASSTSSG-LSNQSPTSSP-TSTLSGSALSPTTTAAFLLLNSGVPNSSSALGEAHTAPASDDPTTTLLSSRPKSNIIQPSSSKKTNGGNITGSSSRNSKKKTTKRQQAGSSTLGNGNVKGHGQPPSSYGSTDATDSPV 605
            MDFG+D +GYA+M     WYQL GAVVCV+CAAFAAGLTVGLMSLDPLELEVKRRVGTP+ERKHAEKICPLIA HHRLLVTLLLFNSIANEALPIFLSGLVPGYVAVLLSVTAILIFGEIIPSA+FTGPNQI+MAA FSG V FLMG+FWPIAYPI  VLD+WLGHNSFKRYTREELSTLVDLQRE G +KHRRPPG+  G  G G    +AKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPMD VYTLCE+D+LDEN LCEIMACG+SRIPVHSARGRQDIRGFLLVKRLIVLDPADRRPVRTLPLRQPIVV PTGSLLELINVFQEGRSHMAIVS CPDLTRQALR+ KPLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETL+RVRRKVRRL QQQQ + +    +A      +S +SSTSS  L NQSP SSP +ST+S   LSPTTTA FLLLNS  P+           P+ +DP+T LLS  PK++        KT    +  ++ R    +  ++  + SST+ NG VK   Q P+SYGSTD  DS V
Sbjct:    1 MDFGDDNAGYADMRDIGSWYQLGGAVVCVICAAFAAGLTVGLMSLDPLELEVKRRVGTPEERKHAEKICPLIAPHHRLLVTLLLFNSIANEALPIFLSGLVPGYVAVLLSVTAILIFGEIIPSAIFTGPNQIIMAAHFSGFVYFLMGVFWPIAYPIGKVLDKWLGHNSFKRYTREELSTLVDLQREVGVVKHRRPPGSHSGSGGGGGTLKAAKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPMDVVYTLCEEDILDENKLCEIMACGYSRIPVHSARGRQDIRGFLLVKRLIVLDPADRRPVRTLPLRQPIVVSPTGSLLELINVFQEGRSHMAIVSPCPDLTRQALRSNKPLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETLRRVRRKVRRLHQQQQHKQQGPQQQAFSGSGHLSASSSTSSSVLMNQSPDSSPASSTMSSGGLSPTTTATFLLLNSDTPSLLPVSHRVSACPSQNDPSTGLLSGGPKNDSTHIPGDGKT---EMKSATRRKKNGEHKEKPFSCSSTIANGLVK--MQSPTSYGSTDMGDSLV 565
The following BLAST results are available for this feature:
BLAST of NO08G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26637.12.900e-22075.26protein mam3 [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02630NO08G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02630.1NO08G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02630.1.cds1NO08G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02630.1.cds2NO08G02630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02630.1.cds3NO08G02630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02630.1.cds4NO08G02630.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02630.1 ID=NO08G02630.1|Name=NO08G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
ATGCTCGGAGGCAAGGAGCGCGAGAGCGGGGGGCCTCCGAGTCTGCAATC
GCTCAGAACGAGGGCAGCAGCAGAGGCAAGGCCCGCTACTTCACACCTCA
ACACTGTAGCAACGGCGGCGGCCGGAATGGATTTCGGGGAAGATGCATCC
GGATATGCAAACATGGATGCGGCAAACTTTTGGTATCAACTGGTCGGGGC
CGTGGTCTGCGTACTGTGCGCAGCTTTTGCCGCAGGCCTCACGGTGGGGC
TCATGTCGCTGGACCCTTTGGAGCTGGAGGTGAAGCGGCGGGTTGGTACG
CCAGATGAACGAAAACACGCTGAGAAAATTTGTCCACTTATTGCGCGGCA
CCATCGTCTGCTTGTGACCCTCCTGCTATTTAATTCCATCGCCAACGAAG
CCCTCCCCATCTTCTTGTCGGGACTGGTGCCTGGTTACGTCGCTGTGCTT
CTTTCCGTCACGGCCATCCTCATTTTTGGTGAGATCATCCCCTCAGCGCT
CTTTACGGGGCCGAACCAAATCGTAATGGCCGCGCGCTTCTCGGGCTGTG
TCCTTTTCCTGATGGGGCTCTTCTGGCCCATCGCCTACCCGATTGCCCAC
GTCCTAGACAGGTGGCTGGGGCACAATTCCTTCAAGCGCTACACGCGAGA
GGAGCTCTCGACGTTGGTAGACCTGCAGCGGGAAGCGGGCACGATCAAGC
ACAGACGGCCACCGGGGACTCCGGGTGGAGGGGTAGGGACCGGAATTTAC
GCCCATTCGGCGAAGGAGAAAGAGCTCGGAGAGAGCATGCGGGCCATCAC
CGTTGACGAGGCGACGATCGTGGCAGGTGTGCTGAAGTGCCATGCGAAGA
AGATTTGTGACGCCTTGAAACCGATGGATGAGGTGTACACTCTTTGTGAA
GATGATGTGCTGGACGAAAACATGCTCTGCGAGATCATGGCCTGTGGCTT
CTCCCGCATTCCCGTGCACAGCGCGCGAGGCAGGCAAGATATCCGCGGCT
TCCTTCTGGTCAAGCGTCTAATTGTACTAGATCCCGCCGACCGCCGCCCC
GTTCGCACCTTGCCGTTGCGCCAGCCTATCGTGGTGGGCCCCACCGGGTC
GCTGCTTGAGCTGATTAATGTCTTCCAGGAGGGCAGGAGCCACATGGCTA
TCGTTTCATCATGTCCTGATTTGACAAGACAGGCCCTTCGGACGGGCAAG
CCGCTGGAAGGACGGATCGCACCGATTGGAATCATAACGCTGGAGGACTT
GTTCGAAGAAATTCTGCAGGAGGAGATTTATGACGAGCATGACGACCGGG
AACGAAAAGCCATCGAGACTCTCAAACGTGTGCGACGGAAGGTTCGCCGC
CTCCGACAGCAACAGCAGGAAGAATTGGAAAGCGGACATCATAAAGCGAT
CAGCGTCGCCAGTAGTACCAGCAGCGGCCTCTCCAACCAGTCGCCCACTT
CCTCTCCAACCTCGACACTTTCCGGTAGCGCACTCTCCCCCACCACCACT
GCTGCATTCCTTCTCCTCAACAGTGGCGTGCCCAACTCTTCCTCCGCCTT
GGGCGAGGCACACACCGCCCCTGCTTCGGACGACCCCACCACTACCCTTC
TTTCGAGCAGGCCAAAAAGTAATATAATACAGCCATCATCGAGTAAGAAG
ACAAATGGCGGTAACATCACCGGCAGCAGTAGTAGGAACAGTAAGAAAAA
GACGACGAAGCGACAGCAGGCCGGGTCGTCTACGCTGGGTAACGGCAACG
TCAAGGGGCATGGCCAGCCACCTTCTTCCTACGGTAGTACAGATGCCACT
GACTCGCCTGTGTAG
back to top

protein sequence of NO08G02630.1

>NO08G02630.1-protein ID=NO08G02630.1-protein|Name=NO08G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MLGGKERESGGPPSLQSLRTRAAAEARPATSHLNTVATAAAGMDFGEDAS
GYANMDAANFWYQLVGAVVCVLCAAFAAGLTVGLMSLDPLELEVKRRVGT
PDERKHAEKICPLIARHHRLLVTLLLFNSIANEALPIFLSGLVPGYVAVL
LSVTAILIFGEIIPSALFTGPNQIVMAARFSGCVLFLMGLFWPIAYPIAH
VLDRWLGHNSFKRYTREELSTLVDLQREAGTIKHRRPPGTPGGGVGTGIY
AHSAKEKELGESMRAITVDEATIVAGVLKCHAKKICDALKPMDEVYTLCE
DDVLDENMLCEIMACGFSRIPVHSARGRQDIRGFLLVKRLIVLDPADRRP
VRTLPLRQPIVVGPTGSLLELINVFQEGRSHMAIVSSCPDLTRQALRTGK
PLEGRIAPIGIITLEDLFEEILQEEIYDEHDDRERKAIETLKRVRRKVRR
LRQQQQEELESGHHKAISVASSTSSGLSNQSPTSSPTSTLSGSALSPTTT
AAFLLLNSGVPNSSSALGEAHTAPASDDPTTTLLSSRPKSNIIQPSSSKK
TNGGNITGSSSRNSKKKTTKRQQAGSSTLGNGNVKGHGQPPSSYGSTDAT
DSPV*
back to top

mRNA from alignment at chr8:737339..740123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02630.1 ID=NO08G02630.1|Name=NO08G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2785bp|location=Sequence derived from alignment at chr8:737339..740123+ (Nannochloropsis oceanica)
ATGCTCGGAGGCAAGGAGCGCGAGAGCGGGGGGCCTCCGAGTCTGCAATC
GCTCAGAACGAGGGTCGAGTTTTGACGCACGCATTTGCTGTCAATTTTCC
CGAGCATGCATTTCAGGACAGCAAGTACTCGCATAAATCTTGGCCCTCTT
CGCTCAGGTCGTGGCCCTGGCTGTCACGCATGCGCGCTTGTGCTGCTGGA
GGAGCAACATCACCTCCTTCTTCGGCTTGCCTTGACTCCTTATCACCACT
TCATCGCACCACTAAAACAGTGAAAAGAGCCAAGGGCGCCGGTGGCAGTG
GGGGGGAAGCACGCACACACTCCCGACGCTATCGCTAGGCAGCAGCAGAG
GCAAGGTACGTGTCCTGGACAGGTGTGGGGTGTGGTGGACTGGATAACTA
GTCCTCTTCCCCGCCCTCGTTGAAGTGTTCACATGTGAACTGACATGCAC
ACCGACTGGATTCACTCCAGTCGCATGCATCATGCACGGTCTCGGCAGGA
CGGCATGTGCGTTCGCTTTTGTTTCAAATGCTTTTTATGGAATAAGTGCA
TGTGTCTCTCTGTCTCTCTGTCTCTCAGTCTATGTCTGAGTCTCTGTCTG
TGTCTCCATGTCTCCGTCCGGGTCTCTGTGTCTCTGTTTCTTTTTGCGTG
TGAGGCTGTCTGGATGTGTTTGCGTCCGAGTGTAAGTGTGTGTGTTGTAT
CTGTGCGTATTTTTGTCTGTGTCTGTGTCTGTGTGTGTATCTGTGTGTCT
GTCTGAATATGTGTCTCGGTGCATCTGTAGGTGCATATAATTGTGCGTGG
CTACTGGACTTGCACCCACAGCTGGCTCGCAGCCAACCACTCAAATGCAT
TCTGCAAGTTGCCACAGATCTCACTGGCTCCACATTCTTTGCACACAGGC
CCGCTACTTCACACCTCAACACTGTAGCAACGGCGGCGGCCGGAATGGAT
TTCGGGGAAGATGCATCCGGATATGCAAACATGGATGCGGCAAACTTTTG
GTATCAACTGGTCGGGGCCGTGGTCTGCGTACTGTGCGCAGCTTTTGCCG
CAGGCCTCACGGTGGGGCTCATGTCGCTGGACCCTTTGGAGCTGGAGGTG
AAGCGGCGGGTTGGTACGCCAGATGAACGAAAACACGCTGAGAAAATTTG
TCCACTTATTGCGCGGCACCATCGTCTGCTTGTGACCCTCCTGCTATTTA
ATTCCATCGCCAACGAAGCCCTCCCCATCTTCTTGTCGGGACTGGTGCCT
GGTTACGTCGCTGTGCTTCTTTCCGTCACGGCCATCCTCATTTTTGGTGA
GATCATCCCCTCAGCGCTCTTTACGGGGCCGAACCAAATCGTAATGGCCG
CGCGCTTCTCGGGCTGTGTCCTTTTCCTGATGGGGCTCTTCTGGCCCATC
GCCTACCCGATTGCCCACGTCCTAGACAGGTGGCTGGGGCACAATTCCTT
CAAGCGCTACACGCGAGAGGAGCTCTCGACGTTGGTAGACCTGCAGCGGG
AAGCGGGCACGATCAAGCACAGACGGCCACCGGGGACTCCGGGTGGAGGG
GTAGGGACCGGAATTTACGCCCATTCGGCGAAGGAGAAAGAGCTCGGAGA
GAGCATGCGGGCCATCACCGTTGACGAGGCGACGATCGTGGCAGGTGTGC
TGAAGTGCCATGCGAAGAAGATTTGTGACGCCTTGAAACCGATGGATGAG
GTGTACACTCTTTGTGAAGATGATGTGCTGGACGAAAACATGCTCTGCGA
GATCATGGCCTGTGGCTTCTCCCGCATTCCCGTGCACAGCGCGCGAGGCA
GGCAAGATATCCGCGGCTTCCTTCTGGTCAAGCGTCTAATTGTACTAGAT
CCCGCCGACCGCCGCCCCGTTCGCACCTTGCCGTTGCGCCAGCCTATCGT
GGTGGGCCCCACCGGGTCGCTGCTTGAGCTGATTAATGTCTTCCAGGAGG
GCAGGAGCCACATGGCTATCGTTTCATCATGTCCTGATTTGACAAGACAG
GCCCTTCGGACGGGCAAGCCGCTGGAAGGACGGATCGCACCGATTGGAAT
CATAACGCTGGAGGACTTGTTCGAAGAAATTCTGCAGGAGGAGATTTATG
ACGAGCATGACGACCGGGTATGTGGATTTTTTGTGCTTGCTGGGATGACC
CTTTCTTCTCCTTTTCATGCTGTCCCCCTGTTTCCCCCCCCCCCCTTTTT
AAAGATATTGCATTGAATCGCCCAGTCTTTGATTCCTTTCTTTTTTTAAT
ATTTTCTCGACTACTCTAGGAACGAAAAGCCATCGAGACTCTCAAACGTG
TGCGACGGAAGGTTCGCCGCCTCCGACAGCAACAGCAGGAAGAATTGGAA
AGCGGACATCATAAAGCGATCAGCGTCGCCAGTAGTACCAGCAGCGGCCT
CTCCAACCAGTCGCCCACTTCCTCTCCAACCTCGACACTTTCCGGTAGCG
CACTCTCCCCCACCACCACTGCTGCATTCCTTCTCCTCAACAGTGGCGTG
CCCAACTCTTCCTCCGCCTTGGGCGAGGCACACACCGCCCCTGCTTCGGA
CGACCCCACCACTACCCTTCTTTCGAGCAGGCCAAAAAGTAATATAATAC
AGCCATCATCGAGTAAGAAGACAAATGGCGGTAACATCACCGGCAGCAGT
AGTAGGAACAGTAAGAAAAAGACGACGAAGCGACAGCAGGCCGGGTCGTC
TACGCTGGGTAACGGCAACGTCAAGGGGCATGGCCAGCCACCTTCTTCCT
ACGGTAGTACAGATGCCACTGACTCGCCTGTGTAG
back to top

Coding sequence (CDS) from alignment at chr8:737339..740123+

>NO08G02630.1 ID=NO08G02630.1|Name=NO08G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=1815bp|location=Sequence derived from alignment at chr8:737339..740123+ (Nannochloropsis oceanica)
ATGCTCGGAGGCAAGGAGCGCGAGAGCGGGGGGCCTCCGAGTCTGCAATC
GCTCAGAACGAGGGCAGCAGCAGAGGCAAGGCCCGCTACTTCACACCTCA
ACACTGTAGCAACGGCGGCGGCCGGAATGGATTTCGGGGAAGATGCATCC
GGATATGCAAACATGGATGCGGCAAACTTTTGGTATCAACTGGTCGGGGC
CGTGGTCTGCGTACTGTGCGCAGCTTTTGCCGCAGGCCTCACGGTGGGGC
TCATGTCGCTGGACCCTTTGGAGCTGGAGGTGAAGCGGCGGGTTGGTACG
CCAGATGAACGAAAACACGCTGAGAAAATTTGTCCACTTATTGCGCGGCA
CCATCGTCTGCTTGTGACCCTCCTGCTATTTAATTCCATCGCCAACGAAG
CCCTCCCCATCTTCTTGTCGGGACTGGTGCCTGGTTACGTCGCTGTGCTT
CTTTCCGTCACGGCCATCCTCATTTTTGGTGAGATCATCCCCTCAGCGCT
CTTTACGGGGCCGAACCAAATCGTAATGGCCGCGCGCTTCTCGGGCTGTG
TCCTTTTCCTGATGGGGCTCTTCTGGCCCATCGCCTACCCGATTGCCCAC
GTCCTAGACAGGTGGCTGGGGCACAATTCCTTCAAGCGCTACACGCGAGA
GGAGCTCTCGACGTTGGTAGACCTGCAGCGGGAAGCGGGCACGATCAAGC
ACAGACGGCCACCGGGGACTCCGGGTGGAGGGGTAGGGACCGGAATTTAC
GCCCATTCGGCGAAGGAGAAAGAGCTCGGAGAGAGCATGCGGGCCATCAC
CGTTGACGAGGCGACGATCGTGGCAGGTGTGCTGAAGTGCCATGCGAAGA
AGATTTGTGACGCCTTGAAACCGATGGATGAGGTGTACACTCTTTGTGAA
GATGATGTGCTGGACGAAAACATGCTCTGCGAGATCATGGCCTGTGGCTT
CTCCCGCATTCCCGTGCACAGCGCGCGAGGCAGGCAAGATATCCGCGGCT
TCCTTCTGGTCAAGCGTCTAATTGTACTAGATCCCGCCGACCGCCGCCCC
GTTCGCACCTTGCCGTTGCGCCAGCCTATCGTGGTGGGCCCCACCGGGTC
GCTGCTTGAGCTGATTAATGTCTTCCAGGAGGGCAGGAGCCACATGGCTA
TCGTTTCATCATGTCCTGATTTGACAAGACAGGCCCTTCGGACGGGCAAG
CCGCTGGAAGGACGGATCGCACCGATTGGAATCATAACGCTGGAGGACTT
GTTCGAAGAAATTCTGCAGGAGGAGATTTATGACGAGCATGACGACCGGG
AACGAAAAGCCATCGAGACTCTCAAACGTGTGCGACGGAAGGTTCGCCGC
CTCCGACAGCAACAGCAGGAAGAATTGGAAAGCGGACATCATAAAGCGAT
CAGCGTCGCCAGTAGTACCAGCAGCGGCCTCTCCAACCAGTCGCCCACTT
CCTCTCCAACCTCGACACTTTCCGGTAGCGCACTCTCCCCCACCACCACT
GCTGCATTCCTTCTCCTCAACAGTGGCGTGCCCAACTCTTCCTCCGCCTT
GGGCGAGGCACACACCGCCCCTGCTTCGGACGACCCCACCACTACCCTTC
TTTCGAGCAGGCCAAAAAGTAATATAATACAGCCATCATCGAGTAAGAAG
ACAAATGGCGGTAACATCACCGGCAGCAGTAGTAGGAACAGTAAGAAAAA
GACGACGAAGCGACAGCAGGCCGGGTCGTCTACGCTGGGTAACGGCAACG
TCAAGGGGCATGGCCAGCCACCTTCTTCCTACGGTAGTACAGATGCCACT
GACTCGCCTGTGTAG
back to top
Synonyms
Publications