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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:731979..735382 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02600.1 vs.
Match: EWM26665.1 (Protein of unknown function DUF1350 [Nannochloropsis gaditana]) HSP 1 Score: 695.7 bits (1794), Expect = 1.100e-196 Identity = 366/499 (73.35%), Postives = 426/499 (85.37%), Query Frame = 0
Query: 1 MREMAERYTSRQEIYRSEIGLRMALSELDKVEATAQLSRAQEEQERRETAERQADADRLRDQLA--GGRAGRRSSSMAEAESAADASGSEAAGGTSPFTNPFVGAAGKAGASSG------GGFPFPEPELPDFLDLKTLGLMGRWEEVGGNFLLRPPDHGSNPPKAVLHFLGGAFVGAAPHLTYRYLLTGLAEKGFLVVATPYNLSFDYVQTCDMVLERFEKVAIPLAREYGALPVVGIGHSCGALLHVLITCLFPDTPRLANALISFNNQNVQKAIPAFEELVVPLSVSLMGDDGLLGGSPVLAADGGALGAGTALRQSLGKLRQTVEEVVEAYSASRLAPSVMRNEVLPLMRQVLSVVDQLPPLLQSISDGAREFAPTPDDTREVCRRMYRARRTLLVQFEDDSIDESENLMKVLQESRSIMRMKRPLVKMDVRLETVKGTHITPLTQDMFRDPPAVVDVLNPLGPPVRRYAQEQFLATVRSVQALLLEWLEEGLVR 492
MRE+AER+T+ +EIYRSE GL+MA++EL+ +EATAQ+ + +EE+ + E AE+QA+A+RLR + G RRSSS A+++ G + + +A ++ SS G F +P+LPDFLD+KT+GLMGRWEE+GGNFLLRPPDH ++PPKAVLHFLGGAFVGAAPHLTYRYLLTGLAE+G+LVVATPY+LSFDYVQ CD VLERFE+VAIPLA+EYGALPVVGIGHSCGALL VLITCLFPDTPRLANALISFNNQ QKAIPAFEELVVPLS+SLMG+DGL +P + +GGALG GTALRQSLG+LRQ +EEVVEAY+ S LAPSV++NEV+PL++Q +SVVDQLPPLLQSISDGAREFAPTPDDTREVCRRMYRARRTLLV+FEDDSIDESENLMKVLQESRSIMRMKRPLVKMDVRLET+KGTHITPL QD+F++PP VVDVLNP GPPVRR+AQ+QFL TVRSVQALL+EWLEEGLVR
Sbjct: 171 MREVAERFTAGEEIYRSETGLKMAVAELNSLEATAQMLQKEEEEAKIEEAEQQAEAERLRAIVMRRNGTRMRRSSSSAKSDQLEKRYGGDVVRDEEGMEGQSMRSASESTHSSAFRDFSEGLFSSFQPDLPDFLDVKTMGLMGRWEEIGGNFLLRPPDHETSPPKAVLHFLGGAFVGAAPHLTYRYLLTGLAEQGYLVVATPYHLSFDYVQVCDTVLERFERVAIPLAKEYGALPVVGIGHSCGALLQVLITCLFPDTPRLANALISFNNQMAQKAIPAFEELVVPLSLSLMGEDGLGAETPGMTGEGGALGPGTALRQSLGRLRQNLEEVVEAYAVSPLAPSVIQNEVVPLVKQAMSVVDQLPPLLQSISDGAREFAPTPDDTREVCRRMYRARRTLLVRFEDDSIDESENLMKVLQESRSIMRMKRPLVKMDVRLETIKGTHITPLAQDIFQNPPQVVDVLNPFGPPVRRFAQQQFLTTVRSVQALLVEWLEEGLVR 669
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02600.1 ID=NO08G02600.1|Name=NO08G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3307bp
CATTTTCGCGTGCTTTCTACGTCTTGTATGTACATGCTTCTTTTTGTTTT
CCTCTTTCATCCTTCCCGCCTGCTCTACATAATTTCCACATGCCGTTGCA
CACACATAAGGGCCAATGCGACATAGAAGAGACCAAACCCCAAAAAAACA
AATCCTACCACATTGTCATCTCTGGCGTTGAAGTCTTCCAGACTCAAAAT
AGCAATTAGGCAATAAAAAAACCCACGCACGAAGAGGTAAGAAAGGACTG
GGCAGAGCTTCTTCCACCACTTCACGCTAGCCTCTGTTAAAATAGCTGCA
AAGGCGAGCACAATGGCAAACCCCCGATAGATGCGGGGAAGGATTGAGGT
AGTGGTACCGTCTTTTTGGATAATCAAGTAGAGGTTATAGGCGACGCTCA
CGAGGCTCAGCAATACGATAATCGTGCTAAGAATGGCGAAAAAGGGCTTA
GTGATGCGCCGTTTCCGCTCTCCCTGTGTGTCGTCTTCCTCAGTTTGCTG
CGGACTAAAATGTCCTGCTAACTTCCATGTCTGCCTCTTTCGTCCCGAAT
CCGCTTTTGTAGAAGAGCGTGTGACCCTTCCTCCTGCAGGTAGCTCTTCC
TCGTCTCCTCCTCCTTCTAGCCCTTCCTCTGGTTCCATCAAGGCATCTGT
AGCCTCTTCTTCCAGCCAACGTGGGCTGGCATTATTTGAGGACATGTCTT
TGTTGTGGTTGTGTTATAGATGGTGGGTGTTGCAAGATGCGGACTGAGTT
TTGGCTTGTTGTCTCTGCTCCCTTATGCGCCCAGGCGAGAGGGATGCGGC
CTCGTCTGTTGAGGCCCGGCCGATGGAGCACGAGAATTTGGAGCCGAAAT
GGTCGCGGTGTGACAGGACAAGGCGCTCGTCCTGGCTATGTGCCTGTTGT
GTATGGATATGGTGTGGATGTAAGTGCGGTGTGAGGCAGGCAAAATTGCA
ATGCGAAGCTGCAGCCCTCGTGCTTCGTTAGCGAGTGCGCCGAGACGAGC
GAGGACACCGGGGAGATAGGGGCTGTGGCTTACTCAGGAAAACTTCCCCT
TCTGATGGACAGCTCGTTCCCCTTCTCTGGACCCTTCTCACCCCCCCCCT
CCCTTAACAGGTACGGCCAGTTTCTCATCTGGGGGCCATAAAGTCACGGG
TAAGCCATGGCGTCGCCACCGGGCCCACCGACAAGCAGATCAGGTGATGA
GGTGGAGGAGGAGCAGAGGCCTGAGACACGCTCCCTACCCCGGCAAGGAT
CTGGATGCCACCGTCCGCGCCGCCCTTACAGGAGTTCAAATGTAGCAACG
GCGCTGGCAGCAATGACGGGTGGTTTATTTTTCCTGACTTGTCCTTGTCC
CCTTGCGGCAGCGTCGCGTGAAGGAGGCCGACCCGCAACCTCAATAAGTG
CTGCGTTTCTAGGCGGCCTGCGGACAAGAAAAGTTTCCTCCTCGTCCCCC
CCATCACGTCGTCGACTTTTCATTGCAGTTACAAGCACCGACGGCTCGAC
AGTTTAGCACTACGAGACGGTCCCGCGACACAACATAGAGACGGTCGCCG
TGGTGGGGAAGGAGGGGAGGAAGGGGTGGAAGATGAAGACGAGTCCCAAA
GATACGCCTCCATCATGCGAGAGATGGCTGAGAGATATACAAGCAGGCAG
GAGATATACCGCAGCGAGATAGGCCTGAGGATGGCGCTGTCGGAACTGGA
CAAGGTGGAGGCCACGGCCCAGCTATCGCGGGCACAGGAAGAGCAAGAGA
GGCGAGAGACGGCTGAACGACAGGCTGACGCAGACAGGCTGCGCGACCAG
CTAGCGGGAGGACGAGCAGGGAGACGGAGCAGCAGCATGGCCGAGGCAGA
ATCGGCAGCAGACGCATCTGGGAGTGAAGCTGCGGGTGGTACATCACCTT
TCACGAATCCCTTTGTTGGTGCTGCCGGCAAGGCCGGGGCCAGTAGTGGT
GGTGGTTTTCCTTTCCCCGAGCCGGAGCTACCTGATTTTCTTGACTTGAA
GACACTGGGTTTGATGGGTAGGTGGGAGGAGGTGGGGGGTAATTTTCTTT
TGCGGCCGCCGGATCATGGTAGCAACCCTCCGAAGGCCGTGTTGCACTTT
TTGGGAGGGGCTTTCGTGGGAGCGGCACCTCATTTGACCTACCGGTATTT
GTTGACGGGGCTGGCAGAGAAGGGTTTTCTGGTTGTTGCGACGCCGTATA
ATCTGTCGTTTGATTACGTACAAACGTGTGACATGGTGTTGGAGAGGTTC
GAGAAAGTGGCCATACCGCTAGCGAGAGAGTATGGGGCCCTTCCTGTGGT
GGGGATCGGGCATTCGTGTGGAGCGTTGCTGCACGTGCTGATAACGTGCT
TGTTCCCGGATACCCCCCGCTTGGCCAATGCCCTTATCTCTTTTAATAAT
CAGAACGTACAGAAGGCCATTCCGGCATTTGAAGAGCTGGTGGTTCCGTT
GTCCGTCTCCCTGATGGGTGATGATGGCTTGCTCGGCGGCTCCCCTGTCT
TAGCGGCTGATGGGGGGGCGCTTGGGGCGGGAACGGCATTGCGACAGTCC
TTGGGGAAGCTGAGGCAGACCGTGGAGGAGGTGGTGGAAGCTTATTCGGC
GAGTAGGCTGGCGCCGTCTGTGATGAGGAATGAAGTGTTGCCGCTGATGA
GACAGGTGTTATCGGTTGTCGATCAGTTGCCGCCGTTGTTGCAGTCTATT
TCGGATGGCGCGCGGGAGTTTGCACCGACGCCTGACGATACCAGGGAGGT
GTGTCGAAGGATGTACCGGGCACGACGGACGCTATTGGTACAGTTTGAAG
ATGATTCCATTGATGAAAGCGAGAATTTGATGAAGGTACTGCAGGAATCT
CGATCAATCATGCGGATGAAACGCCCCCTTGTAAAGATGGACGTGAGGCT
GGAGACGGTCAAAGGTACGCATATCACACCTCTAACGCAAGATATGTTTA
GGGACCCGCCAGCGGTCGTGGATGTGTTGAATCCTCTGGGGCCGCCTGTA
AGGAGATACGCGCAAGAGCAATTTCTGGCGACGGTTCGGAGCGTGCAGGC
ATTGTTGCTGGAATGGTTGGAGGAGGGGCTGGTACGGTAGATAGCTAGTC
GGAGAGCATTGTGTGAAGAGGTACACGAGAATAGTTCGCCTTTTCTCTGC
TGCGCGTGGTGGAAAGGGAAAAGGAGAAGAGGCAGGAAGCGGGCGGTAAT
GATAGAGCATGATAGGTGTAATGTTTACTTTCTTATCTTTCCAATTGTAC
CGTAAATCATGACAAATATTGATAACTGAGAATTAGTCTGGGTAGGGAGG
AGGTTGT back to topprotein sequence of NO08G02600.1 >NO08G02600.1-protein ID=NO08G02600.1-protein|Name=NO08G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MREMAERYTSRQEIYRSEIGLRMALSELDKVEATAQLSRAQEEQERRETA
ERQADADRLRDQLAGGRAGRRSSSMAEAESAADASGSEAAGGTSPFTNPF
VGAAGKAGASSGGGFPFPEPELPDFLDLKTLGLMGRWEEVGGNFLLRPPD
HGSNPPKAVLHFLGGAFVGAAPHLTYRYLLTGLAEKGFLVVATPYNLSFD
YVQTCDMVLERFEKVAIPLAREYGALPVVGIGHSCGALLHVLITCLFPDT
PRLANALISFNNQNVQKAIPAFEELVVPLSVSLMGDDGLLGGSPVLAADG
GALGAGTALRQSLGKLRQTVEEVVEAYSASRLAPSVMRNEVLPLMRQVLS
VVDQLPPLLQSISDGAREFAPTPDDTREVCRRMYRARRTLLVQFEDDSID
ESENLMKVLQESRSIMRMKRPLVKMDVRLETVKGTHITPLTQDMFRDPPA
VVDVLNPLGPPVRRYAQEQFLATVRSVQALLLEWLEEGLVR* back to topmRNA from alignment at chr8:731979..735382- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02600.1 ID=NO08G02600.1|Name=NO08G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3404bp|location=Sequence derived from alignment at chr8:731979..735382- (Nannochloropsis oceanica)
CATTTTCGCGTGCTTTCTACGTCTTGTATGTACATGCTTCTTTTTGTTTT
CCTCTTTCATCCTTCCCGCCTGCTCTACATAATTTCCACATGCCGTTGCA
CACACATAAGGGCCAATGCGACATAGAAGAGACCAAACCCCAAAAAAACA
AATCCTACCACATTGTCATCTCTGGCGTTGAAGTCTTCCAGACTCAAAAT
AGCAATTAGGCAATAAAAAAACCCACGCACGAAGAGGTAAGAAAGGACTG
GGCAGAGCTTCTTCCACCACTTCACGCTAGCCTCTGTTAAAATAGCTGCA
AAGGCGAGCACAATGGCAAACCCCCGATAGATGCGGGGAAGGATTGAGGT
AGTGGTACCGTCTTTTTGGATAATCAAGTAGAGGTTATAGGCGACGCTCA
CGAGGCTCAGCAATACGATAATCGTGCTAAGAATGGCGAAAAAGGGCTTA
GTGATGCGCCGTTTCCGCTCTCCCTGTGTGTCGTCTTCCTCAGTTTGCTG
CGGACTAAAATGTCCTGCTAACTTCCATGTCTGCCTCTTTCGTCCCGAAT
CCGCTTTTGTAGAAGAGCGTGTGACCCTTCCTCCTGCAGGTAGCTCTTCC
TCGTCTCCTCCTCCTTCTAGCCCTTCCTCTGGTTCCATCAAGGCATCTGT
AGCCTCTTCTTCCAGCCAACGTGGGCTGGCATTATTTGAGGACATGTCTT
TGTTGTGGTTGTGTTATAGATGGTGGGTGTTGCAAGATGCGGACTGAGTT
TTGGCTTGTTGTCTCTGCTCCCTTATGCGCCCAGGCGAGAGGGATGCGGC
CTCGTCTGTTGAGGCCCGGCCGATGGAGCACGAGAATTTGGAGCCGAAAT
GGTCGCGGTGTGACAGGACAAGGCGCTCGTCCTGGCTATGTGCCTGTTGT
GTATGGATATGGTGTGGATGTAAGTGCGGTGTGAGGCAGGCAAAATTGCA
ATGCGAAGCTGCAGCCCTCGTGCTTCGTTAGCGAGTGCGCCGAGACGAGC
GAGGACACCGGGGAGATAGGGGCTGTGGCTTACTCAGGAAAACTTCCCCT
TCTGATGGACAGCTCGTTCCCCTTCTCTGGACCCTTCTCACCCCCCCCCT
CCCTTAACAGGTACGGCCAGTTTCTCATCTGGGGGCCATAAAGTCACGGG
TAAGCCATGGCGTCGCCACCGGGCCCACCGACAAGCAGATCAGGTGATGA
GGTGGAGGAGGAGCAGAGGCCTGAGACACGCTCCCTACCCCGGCAAGGAT
CTGGATGCCACCGTCCGCGCCGCCCTTACAGGAGTTCAAATGTAGCAACG
GCGCTGGCAGCAATGACGGGTGGTTTATTTTTCCTGACTTGTCCTTGTCC
CCTTGCGGCAGCGTCGCGTGAAGGAGGCCGACCCGCAACCTCAATAAGTG
CTGCGTTTCTAGGCGGCCTGCGGACAAGAAAAGTTTCCTCCTCGTCCCCC
CCATCACGTCGTCGACTTTTCATTGCAGTTACAAGCACCGACGGCTCGAC
AGTTTAGCACTACGAGACGGTCCCGCGACACAACATAGAGACGGTCGCCG
TGGTGGGGAAGGAGGGGAGGAAGGGGTGGAAGATGAAGACGAGTCCCAAA
GATACGCCTCCATCATGCGAGAGATGGCTGAGAGGTACGATTGATTATTT
GGTAGGCAAAATAGAGAATGTGGCACAAACAAATAAATTATTCATCCTTG
CCACCCATTCCATTTGTCCTCCTTTATATAGATATACAAGCAGGCAGGAG
ATATACCGCAGCGAGATAGGCCTGAGGATGGCGCTGTCGGAACTGGACAA
GGTGGAGGCCACGGCCCAGCTATCGCGGGCACAGGAAGAGCAAGAGAGGC
GAGAGACGGCTGAACGACAGGCTGACGCAGACAGGCTGCGCGACCAGCTA
GCGGGAGGACGAGCAGGGAGACGGAGCAGCAGCATGGCCGAGGCAGAATC
GGCAGCAGACGCATCTGGGAGTGAAGCTGCGGGTGGTACATCACCTTTCA
CGAATCCCTTTGTTGGTGCTGCCGGCAAGGCCGGGGCCAGTAGTGGTGGT
GGTTTTCCTTTCCCCGAGCCGGAGCTACCTGATTTTCTTGACTTGAAGAC
ACTGGGTTTGATGGGTAGGTGGGAGGAGGTGGGGGGTAATTTTCTTTTGC
GGCCGCCGGATCATGGTAGCAACCCTCCGAAGGCCGTGTTGCACTTTTTG
GGAGGGGCTTTCGTGGGAGCGGCACCTCATTTGACCTACCGGTATTTGTT
GACGGGGCTGGCAGAGAAGGGTTTTCTGGTTGTTGCGACGCCGTATAATC
TGTCGTTTGATTACGTACAAACGTGTGACATGGTGTTGGAGAGGTTCGAG
AAAGTGGCCATACCGCTAGCGAGAGAGTATGGGGCCCTTCCTGTGGTGGG
GATCGGGCATTCGTGTGGAGCGTTGCTGCACGTGCTGATAACGTGCTTGT
TCCCGGATACCCCCCGCTTGGCCAATGCCCTTATCTCTTTTAATAATCAG
AACGTACAGAAGGCCATTCCGGCATTTGAAGAGCTGGTGGTTCCGTTGTC
CGTCTCCCTGATGGGTGATGATGGCTTGCTCGGCGGCTCCCCTGTCTTAG
CGGCTGATGGGGGGGCGCTTGGGGCGGGAACGGCATTGCGACAGTCCTTG
GGGAAGCTGAGGCAGACCGTGGAGGAGGTGGTGGAAGCTTATTCGGCGAG
TAGGCTGGCGCCGTCTGTGATGAGGAATGAAGTGTTGCCGCTGATGAGAC
AGGTGTTATCGGTTGTCGATCAGTTGCCGCCGTTGTTGCAGTCTATTTCG
GATGGCGCGCGGGAGTTTGCACCGACGCCTGACGATACCAGGGAGGTGTG
TCGAAGGATGTACCGGGCACGACGGACGCTATTGGTACAGTTTGAAGATG
ATTCCATTGATGAAAGCGAGAATTTGATGAAGGTACTGCAGGAATCTCGA
TCAATCATGCGGATGAAACGCCCCCTTGTAAAGATGGACGTGAGGCTGGA
GACGGTCAAAGGTACGCATATCACACCTCTAACGCAAGATATGTTTAGGG
ACCCGCCAGCGGTCGTGGATGTGTTGAATCCTCTGGGGCCGCCTGTAAGG
AGATACGCGCAAGAGCAATTTCTGGCGACGGTTCGGAGCGTGCAGGCATT
GTTGCTGGAATGGTTGGAGGAGGGGCTGGTACGGTAGATAGCTAGTCGGA
GAGCATTGTGTGAAGAGGTACACGAGAATAGTTCGCCTTTTCTCTGCTGC
GCGTGGTGGAAAGGGAAAAGGAGAAGAGGCAGGAAGCGGGCGGTAATGAT
AGAGCATGATAGGTGTAATGTTTACTTTCTTATCTTTCCAATTGTACCGT
AAATCATGACAAATATTGATAACTGAGAATTAGTCTGGGTAGGGAGGAGG
TTGT back to topCoding sequence (CDS) from alignment at chr8:731979..735382- >NO08G02600.1 ID=NO08G02600.1|Name=NO08G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr8:731979..735382- (Nannochloropsis oceanica)
ATGCGAGAGATGGCTGAGAGATATACAAGCAGGCAGGAGATATACCGCAG
CGAGATAGGCCTGAGGATGGCGCTGTCGGAACTGGACAAGGTGGAGGCCA
CGGCCCAGCTATCGCGGGCACAGGAAGAGCAAGAGAGGCGAGAGACGGCT
GAACGACAGGCTGACGCAGACAGGCTGCGCGACCAGCTAGCGGGAGGACG
AGCAGGGAGACGGAGCAGCAGCATGGCCGAGGCAGAATCGGCAGCAGACG
CATCTGGGAGTGAAGCTGCGGGTGGTACATCACCTTTCACGAATCCCTTT
GTTGGTGCTGCCGGCAAGGCCGGGGCCAGTAGTGGTGGTGGTTTTCCTTT
CCCCGAGCCGGAGCTACCTGATTTTCTTGACTTGAAGACACTGGGTTTGA
TGGGTAGGTGGGAGGAGGTGGGGGGTAATTTTCTTTTGCGGCCGCCGGAT
CATGGTAGCAACCCTCCGAAGGCCGTGTTGCACTTTTTGGGAGGGGCTTT
CGTGGGAGCGGCACCTCATTTGACCTACCGGTATTTGTTGACGGGGCTGG
CAGAGAAGGGTTTTCTGGTTGTTGCGACGCCGTATAATCTGTCGTTTGAT
TACGTACAAACGTGTGACATGGTGTTGGAGAGGTTCGAGAAAGTGGCCAT
ACCGCTAGCGAGAGAGTATGGGGCCCTTCCTGTGGTGGGGATCGGGCATT
CGTGTGGAGCGTTGCTGCACGTGCTGATAACGTGCTTGTTCCCGGATACC
CCCCGCTTGGCCAATGCCCTTATCTCTTTTAATAATCAGAACGTACAGAA
GGCCATTCCGGCATTTGAAGAGCTGGTGGTTCCGTTGTCCGTCTCCCTGA
TGGGTGATGATGGCTTGCTCGGCGGCTCCCCTGTCTTAGCGGCTGATGGG
GGGGCGCTTGGGGCGGGAACGGCATTGCGACAGTCCTTGGGGAAGCTGAG
GCAGACCGTGGAGGAGGTGGTGGAAGCTTATTCGGCGAGTAGGCTGGCGC
CGTCTGTGATGAGGAATGAAGTGTTGCCGCTGATGAGACAGGTGTTATCG
GTTGTCGATCAGTTGCCGCCGTTGTTGCAGTCTATTTCGGATGGCGCGCG
GGAGTTTGCACCGACGCCTGACGATACCAGGGAGGTGTGTCGAAGGATGT
ACCGGGCACGACGGACGCTATTGGTACAGTTTGAAGATGATTCCATTGAT
GAAAGCGAGAATTTGATGAAGGTACTGCAGGAATCTCGATCAATCATGCG
GATGAAACGCCCCCTTGTAAAGATGGACGTGAGGCTGGAGACGGTCAAAG
GTACGCATATCACACCTCTAACGCAAGATATGTTTAGGGACCCGCCAGCG
GTCGTGGATGTGTTGAATCCTCTGGGGCCGCCTGTAAGGAGATACGCGCA
AGAGCAATTTCTGGCGACGGTTCGGAGCGTGCAGGCATTGTTGCTGGAAT
GGTTGGAGGAGGGGCTGGTACGGTAG back to top
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