NO08G02540.1, NO08G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02540.1
Unique NameNO08G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1953
Alignment locationchr8:723931..726418 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:723931..726418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02540.1 vs.
Match: EWM26617.1 (Low temperature viability protein [Nannochloropsis gaditana])

HSP 1 Score: 515.0 bits (1325), Expect = 3.400e-142
Identity = 337/632 (53.32%), Postives = 399/632 (63.13%), Query Frame = 0
Query:   47 GKIKKRFIDPVNSQHFHLVHRSQRDVKCDDLEAPQYVLLPGRRGNAAARAQTGDDSKDSDEEAGESSKKMRWRDHVNELGLPNDGYDYGRHLKTMGGGRFIAASGEVGSALPGDGIFELPEDPEHWRKARTGQGSRDE-----EG-----QKLLKPVVDAITLSADCMDEDMEEALFGSDGDEGAEEEGGVGGMFEELNDDFILQAGRE----LDSE-----GEGAGGGFDFEAHMAMLIAKSEKSLGWAPARGWEDGELEKLQQLIPHKDLEGYDTDEVDDDEEEAGARRKSAAAMRRHRPWGARAENGSGAGVVSRKDHASMKDDFEDLLAEYNEDDIGELEDPEEAGANTRGFMDVEGGGDGMGGPGCAY-----IEHILDDFLRAKIAEIDEEEARTEVREHAEGRGDTPRRKSVGLFASSGGLAEEEGEEPAEEWEEAGDEEGVTAGGMGEADDMEQFIVKHNYLGDRDGPTPWDCETILSTCSNLDNHPSLIIEE-GRQRKGKKGKSNMYRGKMPGLPE-EERG--PEKAVAMVALSKKSGLPLGVLPMAEKKKVGVEIMNAGSKRDKAETEEEKRLRKAAVKQARREGRAKKKEMAQAFKVVEKVANIHSRSGETAVARSVFQYS 651
            GK +KRFIDP NSQHF++VHRSQRD   DD +A QYVLLPGRRGNAA R +  + S        +  K +RWRDH+NELGLPNDGY+YGRHLKTMGGGRFIAASGE+  A    G+++L +          G G +DE     EG     ++ LKPVVDAITLSADCMDE++E ALFGSD ++G E+  GV G   ELNDDFILQAG+E    LD E     G G G  FDFEAHMAMLIAKSEKSLGWAPARGW  GELE +Q++ P + L   D+D+ +   E +   +K  AA + H     +  +G G    S K  +  +++FEDLL EY E+DIG LE  EE  +               GGPG        IE ILD+FLRAKIA    +  R    E   GR   P        +S+  + E+E  E AEE  E G            ADD+E FI KH+YLGDRDG  PWDCETILSTCSNLDNHPSLI E+ GRQ +   GK   +  ++P LPE  + G  PE A  MVALSKKSGLPLGVLP+A KK   +   N GSKRDK E   +KR RKAAVK ARREGRA+KKEM QAFK VEKVA + SRSGETAV RSVFQ+S
Sbjct:    2 GKARKRFIDPANSQHFYVVHRSQRDANGDDPKASQYVLLPGRRGNAADRGEATEPS--------QREKDIRWRDHINELGLPNDGYNYGRHLKTMGGGRFIAASGEIVQARTRGGVYQLAQ----------GSGLQDERIAGDEGVAPCREERLKPVVDAITLSADCMDEELERALFGSDTEDGEEKVEGVRGC-GELNDDFILQAGKEPKEDLDEEDGEVDGNGGGDKFDFEAHMAMLIAKSEKSLGWAPARGWGHGELESMQRVTPSRHLGFRDSDD-EKTLELSRRSKKMGAAAKPHDATRMKESSGEGGMPKSGKHRSRFEEEFEDLLTEYGEEDIGGLEGTEEEAS-------------ARGGPGAVKEEEDRIEDILDNFLRAKIACTARQGKRDGHSELEVGRKGRPGSSG----SSTLVMEEDEIHEGAEEILETG------------ADDIEDFIAKHDYLGDRDGLVPWDCETILSTCSNLDNHPSLISEQRGRQGRKMHGK---HCSELPRLPEGRDVGLCPENAAEMVALSKKSGLPLGVLPLAPKK--AISNANTGSKRDKDEKVLDKRARKAAVKLARREGRARKKEMTQAFKEVEKVAGLQSRSGETAVNRSVFQFS 579          
The following BLAST results are available for this feature:
BLAST of NO08G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26617.13.400e-14253.32Low temperature viability protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02540NO08G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02540.1NO08G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02540.1.cds1NO08G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02540.1.cds2NO08G02540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02540.1.cds3NO08G02540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02540.1.cds4NO08G02540.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02540.1 ID=NO08G02540.1|Name=NO08G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp
ATGTACGCCACAGACATCAAGCTCCGCCCTCGATTAATCAACGTCTCGAA
GCTAGCATCTTCTGCGTCGCTCCGGCTGGATCTTAAGTCAAATGGTACGG
CACAGCATATGACCTCCTCCCTCATTGCCCACCATCGGGGCAAAATCAAG
AAGCGCTTCATCGACCCTGTAAACTCCCAACACTTCCATCTGGTGCACCG
CAGCCAGCGCGACGTCAAGTGCGACGATCTCGAGGCACCGCAGTATGTGC
TGCTGCCAGGACGGCGCGGCAACGCAGCAGCCCGCGCCCAAACGGGCGAC
GACTCCAAAGATAGCGACGAGGAAGCAGGCGAGTCAAGCAAGAAAATGCG
ATGGCGAGACCATGTGAACGAGCTGGGCCTTCCTAATGACGGTTATGACT
ACGGTAGACATTTGAAGACGATGGGAGGAGGGCGGTTTATTGCTGCTTCG
GGAGAGGTTGGTAGTGCCTTGCCTGGGGATGGCATTTTTGAGCTGCCGGA
AGACCCGGAGCATTGGAGAAAGGCAAGAACTGGGCAGGGCTCGAGGGATG
AGGAGGGACAGAAGCTGCTGAAGCCGGTAGTGGATGCGATTACATTATCA
GCCGATTGTATGGACGAGGATATGGAGGAGGCCTTGTTTGGGAGCGACGG
GGACGAGGGGGCCGAGGAGGAGGGAGGAGTGGGGGGGATGTTCGAAGAGC
TGAATGACGATTTTATCTTGCAAGCGGGTCGGGAACTGGATTCCGAGGGG
GAGGGAGCGGGGGGAGGGTTTGATTTTGAGGCTCATATGGCCATGTTGAT
TGCTAAAAGTGAGAAATCTTTGGGTTGGGCCCCGGCACGTGGATGGGAGG
ACGGAGAACTAGAGAAGCTGCAGCAGTTGATTCCCCACAAGGATTTGGAG
GGTTATGACACTGATGAAGTGGACGATGACGAGGAGGAAGCTGGGGCGAG
GAGGAAGAGTGCAGCAGCGATGCGGCGCCATCGACCTTGGGGGGCACGGG
CCGAGAATGGGTCCGGGGCAGGAGTTGTTTCAAGAAAGGACCATGCATCC
ATGAAGGATGATTTTGAAGATTTGCTGGCCGAGTATAATGAGGATGACAT
TGGCGAGCTGGAGGACCCAGAGGAGGCAGGGGCGAACACGCGGGGATTTA
TGGATGTTGAAGGAGGAGGGGATGGAATGGGCGGCCCCGGCTGTGCGTAT
ATTGAGCACATTTTGGATGACTTCTTGAGGGCCAAGATTGCCGAGATTGA
TGAGGAGGAGGCACGTACGGAGGTGAGGGAGCATGCGGAGGGGCGGGGGG
ACACTCCGAGGAGGAAGAGTGTTGGGTTGTTCGCCAGCAGTGGGGGACTG
GCGGAAGAGGAGGGAGAGGAACCGGCTGAGGAATGGGAGGAGGCAGGGGA
CGAGGAAGGGGTCACGGCTGGAGGGATGGGTGAGGCGGACGACATGGAGC
AATTCATTGTCAAGCACAACTACCTCGGGGACCGGGATGGCCCTACCCCC
TGGGACTGTGAGACCATACTCTCCACCTGCTCGAATCTGGACAACCACCC
CAGCCTTATCATCGAGGAAGGGAGGCAACGAAAGGGAAAGAAAGGGAAGA
GCAACATGTATCGTGGTAAGATGCCGGGCCTGCCTGAAGAAGAAAGAGGG
CCCGAGAAAGCGGTGGCCATGGTTGCCCTCTCGAAGAAGAGTGGATTGCC
CTTGGGGGTCCTGCCAATGGCGGAGAAAAAGAAGGTCGGCGTCGAGATCA
TGAATGCGGGGAGCAAGCGCGATAAGGCGGAGACGGAAGAGGAGAAGCGG
CTTCGAAAAGCCGCTGTGAAGCAGGCGCGGCGGGAGGGACGGGCAAAAAA
GAAGGAAATGGCGCAAGCATTTAAGGTGGTGGAGAAGGTTGCCAATATCC
ACTCTCGGAGTGGCGAGACTGCCGTGGCTCGGAGCGTCTTTCAGTATTCG
TAG
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protein sequence of NO08G02540.1

>NO08G02540.1-protein ID=NO08G02540.1-protein|Name=NO08G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MYATDIKLRPRLINVSKLASSASLRLDLKSNGTAQHMTSSLIAHHRGKIK
KRFIDPVNSQHFHLVHRSQRDVKCDDLEAPQYVLLPGRRGNAAARAQTGD
DSKDSDEEAGESSKKMRWRDHVNELGLPNDGYDYGRHLKTMGGGRFIAAS
GEVGSALPGDGIFELPEDPEHWRKARTGQGSRDEEGQKLLKPVVDAITLS
ADCMDEDMEEALFGSDGDEGAEEEGGVGGMFEELNDDFILQAGRELDSEG
EGAGGGFDFEAHMAMLIAKSEKSLGWAPARGWEDGELEKLQQLIPHKDLE
GYDTDEVDDDEEEAGARRKSAAAMRRHRPWGARAENGSGAGVVSRKDHAS
MKDDFEDLLAEYNEDDIGELEDPEEAGANTRGFMDVEGGGDGMGGPGCAY
IEHILDDFLRAKIAEIDEEEARTEVREHAEGRGDTPRRKSVGLFASSGGL
AEEEGEEPAEEWEEAGDEEGVTAGGMGEADDMEQFIVKHNYLGDRDGPTP
WDCETILSTCSNLDNHPSLIIEEGRQRKGKKGKSNMYRGKMPGLPEEERG
PEKAVAMVALSKKSGLPLGVLPMAEKKKVGVEIMNAGSKRDKAETEEEKR
LRKAAVKQARREGRAKKKEMAQAFKVVEKVANIHSRSGETAVARSVFQYS
*
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mRNA from alignment at chr8:723931..726418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02540.1 ID=NO08G02540.1|Name=NO08G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp|location=Sequence derived from alignment at chr8:723931..726418- (Nannochloropsis oceanica)
ATGTACGCCACAGACATCAAGCTCCGCCCTCGATTAATCAACGTCTCGAA GCTAGCATCTTCTGCGTCGCTCCGGCTGGATCTTAAGTCAAATGGTACGG CACAGCATATGACCTCCTCCCTCATTGCCCACCATCGGGTGGGGATGGAC AAAGTTGCTAAACCACATCATTACTTTCGCTTCTCCACCGACCACAGGGC AAAATCAAGAAGCGCTTCATCGACCCTGTAAACTCCCAACACTTCCATCT GGTGCACCGCAGCCAGCGCGACGTCAAGTGCGACGATCTCGAGGCACCGC AGTATGTGCTGCTGCCAGGACGGGTACGTACATCCTCCCCTCGACAATGC TTGATCAGCAAATGCTGCATTTTCATTGTGGTATCCTGTCGAATCACGTG TCTACTGCTCCTAAGTCAATCTAAACCTGAACGGAGTGCTCTTCGTACTA TTTTCTATTCAGGTTGCCTATCCATTAGGCAAGGGCTCCCTCCAGTCTCA CACTCCCAACTCTGCTCCTCTTCTGCCAGCCTGCTCGACTTTTGCCACAG AGGCTCAGCATGCCCCATGTGTTCTCATCTTTCTTCCACTAAATGCGCCG AAATTTTCATGATAGCTGACCTTAAATCCTGTCCTCTCAACCTCCACCAT CCACACCCCTCCCAAACCACCCCCTACAAGCGCGGCAACGCAGCAGCCCG CGCCCAAACGGGCGACGACTCCAAAGATAGCGACGAGGAAGCAGGCGAGT CAAGCAAGAAAATGCGATGGCGAGACCATGTGAACGAGCTGGGCCTTCCT AATGACGGTTATGACTACGGTAGACATTTGAAGACGATGGGAGGAGGGCG GTTTATTGCTGCTTCGGGAGAGGTTGGTAGTGCCTTGCCTGGGGATGGCA TTTTTGAGCTGCCGGAAGACCCGGAGCATTGGAGAAAGGCAAGAACTGGG CAGGGCTCGAGGGATGAGGAGGGACAGAAGCTGCTGAAGCCGGTAGTGGA TGCGATTACATTATCAGCCGATTGTATGGACGAGGATATGGAGGAGGCCT TGTTTGGGAGCGACGGGGACGAGGGGGCCGAGGAGGAGGGAGGAGTGGGG GGGATGTTCGAAGAGCTGAATGACGATTTTATCTTGCAAGCGGGTCGGGA ACTGGATTCCGAGGGGGAGGGAGCGGGGGGAGGGTTTGATTTTGAGGCTC ATATGGCCATGTTGATTGCTAAAAGTGAGAAATCTTTGGGTTGGGCCCCG GCACGTGGATGGGAGGACGGAGAACTAGAGAAGCTGCAGCAGTTGATTCC CCACAAGGATTTGGAGGGTTATGACACTGATGAAGTGGACGATGACGAGG AGGAAGCTGGGGCGAGGAGGAAGAGTGCAGCAGCGATGCGGCGCCATCGA CCTTGGGGGGCACGGGCCGAGAATGGGTCCGGGGCAGGAGTTGTTTCAAG AAAGGACCATGCATCCATGAAGGATGATTTTGAAGATTTGCTGGCCGAGT ATAATGAGGATGACATTGGCGAGCTGGAGGACCCAGAGGAGGCAGGGGCG AACACGCGGGGATTTATGGATGTTGAAGGAGGAGGGGATGGAATGGGCGG CCCCGGCTGTGCGTATATTGAGCACATTTTGGATGACTTCTTGAGGGCCA AGATTGCCGAGATTGATGAGGAGGAGGCACGTACGGAGGTGAGGGAGCAT GCGGAGGGGCGGGGGGACACTCCGAGGAGGAAGAGTGTTGGGTTGTTCGC CAGCAGTGGGGGACTGGCGGAAGAGGAGGGAGAGGAACCGGCTGAGGAAT GGGAGGAGGCAGGGGACGAGGAAGGGGTCACGGCTGGAGGGATGGGTGAG GCGGACGACATGGAGCAATTCATTGTCAAGCACAACTACCTCGGGGTAAG CGATTGCGCGGGGGGTGGGGAGGAAATTTAATGTGTGCGACCTCTCCCTT CTTGCCTCTATGTAAAATGGCTCACACACACTCCTCTTCTGCCGCTTTCC CTTTCCGCTATTAGGACCGGGATGGCCCTACCCCCTGGGACTGTGAGACC ATACTCTCCACCTGCTCGAATCTGGACAACCACCCCAGCCTTATCATCGA GGAAGGGAGGCAACGAAAGGGAAAGAAAGGGAAGAGCAACATGTATCGTG GTAAGATGCCGGGCCTGCCTGAAGAAGAAAGAGGGCCCGAGAAAGCGGTG GCCATGGTTGCCCTCTCGAAGAAGAGTGGATTGCCCTTGGGGGTCCTGCC AATGGCGGAGAAAAAGAAGGTCGGCGTCGAGATCATGAATGCGGGGAGCA AGCGCGATAAGGCGGAGACGGAAGAGGAGAAGCGGCTTCGAAAAGCCGCT GTGAAGCAGGCGCGGCGGGAGGGACGGGCAAAAAAGAAGGAAATGGCGCA AGCATTTAAGGTGGTGGAGAAGGTTGCCAATATCCACTCTCGGAGTGGCG AGACTGCCGTGGCTCGGAGCGTCTTTCAGTATTCGTAG
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Coding sequence (CDS) from alignment at chr8:723931..726418-

>NO08G02540.1 ID=NO08G02540.1|Name=NO08G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at chr8:723931..726418- (Nannochloropsis oceanica)
ATGTACGCCACAGACATCAAGCTCCGCCCTCGATTAATCAACGTCTCGAA
GCTAGCATCTTCTGCGTCGCTCCGGCTGGATCTTAAGTCAAATGGTACGG
CACAGCATATGACCTCCTCCCTCATTGCCCACCATCGGGGCAAAATCAAG
AAGCGCTTCATCGACCCTGTAAACTCCCAACACTTCCATCTGGTGCACCG
CAGCCAGCGCGACGTCAAGTGCGACGATCTCGAGGCACCGCAGTATGTGC
TGCTGCCAGGACGGCGCGGCAACGCAGCAGCCCGCGCCCAAACGGGCGAC
GACTCCAAAGATAGCGACGAGGAAGCAGGCGAGTCAAGCAAGAAAATGCG
ATGGCGAGACCATGTGAACGAGCTGGGCCTTCCTAATGACGGTTATGACT
ACGGTAGACATTTGAAGACGATGGGAGGAGGGCGGTTTATTGCTGCTTCG
GGAGAGGTTGGTAGTGCCTTGCCTGGGGATGGCATTTTTGAGCTGCCGGA
AGACCCGGAGCATTGGAGAAAGGCAAGAACTGGGCAGGGCTCGAGGGATG
AGGAGGGACAGAAGCTGCTGAAGCCGGTAGTGGATGCGATTACATTATCA
GCCGATTGTATGGACGAGGATATGGAGGAGGCCTTGTTTGGGAGCGACGG
GGACGAGGGGGCCGAGGAGGAGGGAGGAGTGGGGGGGATGTTCGAAGAGC
TGAATGACGATTTTATCTTGCAAGCGGGTCGGGAACTGGATTCCGAGGGG
GAGGGAGCGGGGGGAGGGTTTGATTTTGAGGCTCATATGGCCATGTTGAT
TGCTAAAAGTGAGAAATCTTTGGGTTGGGCCCCGGCACGTGGATGGGAGG
ACGGAGAACTAGAGAAGCTGCAGCAGTTGATTCCCCACAAGGATTTGGAG
GGTTATGACACTGATGAAGTGGACGATGACGAGGAGGAAGCTGGGGCGAG
GAGGAAGAGTGCAGCAGCGATGCGGCGCCATCGACCTTGGGGGGCACGGG
CCGAGAATGGGTCCGGGGCAGGAGTTGTTTCAAGAAAGGACCATGCATCC
ATGAAGGATGATTTTGAAGATTTGCTGGCCGAGTATAATGAGGATGACAT
TGGCGAGCTGGAGGACCCAGAGGAGGCAGGGGCGAACACGCGGGGATTTA
TGGATGTTGAAGGAGGAGGGGATGGAATGGGCGGCCCCGGCTGTGCGTAT
ATTGAGCACATTTTGGATGACTTCTTGAGGGCCAAGATTGCCGAGATTGA
TGAGGAGGAGGCACGTACGGAGGTGAGGGAGCATGCGGAGGGGCGGGGGG
ACACTCCGAGGAGGAAGAGTGTTGGGTTGTTCGCCAGCAGTGGGGGACTG
GCGGAAGAGGAGGGAGAGGAACCGGCTGAGGAATGGGAGGAGGCAGGGGA
CGAGGAAGGGGTCACGGCTGGAGGGATGGGTGAGGCGGACGACATGGAGC
AATTCATTGTCAAGCACAACTACCTCGGGGACCGGGATGGCCCTACCCCC
TGGGACTGTGAGACCATACTCTCCACCTGCTCGAATCTGGACAACCACCC
CAGCCTTATCATCGAGGAAGGGAGGCAACGAAAGGGAAAGAAAGGGAAGA
GCAACATGTATCGTGGTAAGATGCCGGGCCTGCCTGAAGAAGAAAGAGGG
CCCGAGAAAGCGGTGGCCATGGTTGCCCTCTCGAAGAAGAGTGGATTGCC
CTTGGGGGTCCTGCCAATGGCGGAGAAAAAGAAGGTCGGCGTCGAGATCA
TGAATGCGGGGAGCAAGCGCGATAAGGCGGAGACGGAAGAGGAGAAGCGG
CTTCGAAAAGCCGCTGTGAAGCAGGCGCGGCGGGAGGGACGGGCAAAAAA
GAAGGAAATGGCGCAAGCATTTAAGGTGGTGGAGAAGGTTGCCAATATCC
ACTCTCGGAGTGGCGAGACTGCCGTGGCTCGGAGCGTCTTTCAGTATTCG
TAG
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Synonyms
Publications