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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:723931..726418 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02540.1 vs.
Match: EWM26617.1 (Low temperature viability protein [Nannochloropsis gaditana]) HSP 1 Score: 515.0 bits (1325), Expect = 3.400e-142 Identity = 337/632 (53.32%), Postives = 399/632 (63.13%), Query Frame = 0
Query: 47 GKIKKRFIDPVNSQHFHLVHRSQRDVKCDDLEAPQYVLLPGRRGNAAARAQTGDDSKDSDEEAGESSKKMRWRDHVNELGLPNDGYDYGRHLKTMGGGRFIAASGEVGSALPGDGIFELPEDPEHWRKARTGQGSRDE-----EG-----QKLLKPVVDAITLSADCMDEDMEEALFGSDGDEGAEEEGGVGGMFEELNDDFILQAGRE----LDSE-----GEGAGGGFDFEAHMAMLIAKSEKSLGWAPARGWEDGELEKLQQLIPHKDLEGYDTDEVDDDEEEAGARRKSAAAMRRHRPWGARAENGSGAGVVSRKDHASMKDDFEDLLAEYNEDDIGELEDPEEAGANTRGFMDVEGGGDGMGGPGCAY-----IEHILDDFLRAKIAEIDEEEARTEVREHAEGRGDTPRRKSVGLFASSGGLAEEEGEEPAEEWEEAGDEEGVTAGGMGEADDMEQFIVKHNYLGDRDGPTPWDCETILSTCSNLDNHPSLIIEE-GRQRKGKKGKSNMYRGKMPGLPE-EERG--PEKAVAMVALSKKSGLPLGVLPMAEKKKVGVEIMNAGSKRDKAETEEEKRLRKAAVKQARREGRAKKKEMAQAFKVVEKVANIHSRSGETAVARSVFQYS 651
GK +KRFIDP NSQHF++VHRSQRD DD +A QYVLLPGRRGNAA R + + S + K +RWRDH+NELGLPNDGY+YGRHLKTMGGGRFIAASGE+ A G+++L + G G +DE EG ++ LKPVVDAITLSADCMDE++E ALFGSD ++G E+ GV G ELNDDFILQAG+E LD E G G G FDFEAHMAMLIAKSEKSLGWAPARGW GELE +Q++ P + L D+D+ + E + +K AA + H + +G G S K + +++FEDLL EY E+DIG LE EE + GGPG IE ILD+FLRAKIA + R E GR P +S+ + E+E E AEE E G ADD+E FI KH+YLGDRDG PWDCETILSTCSNLDNHPSLI E+ GRQ + GK + ++P LPE + G PE A MVALSKKSGLPLGVLP+A KK + N GSKRDK E +KR RKAAVK ARREGRA+KKEM QAFK VEKVA + SRSGETAV RSVFQ+S
Sbjct: 2 GKARKRFIDPANSQHFYVVHRSQRDANGDDPKASQYVLLPGRRGNAADRGEATEPS--------QREKDIRWRDHINELGLPNDGYNYGRHLKTMGGGRFIAASGEIVQARTRGGVYQLAQ----------GSGLQDERIAGDEGVAPCREERLKPVVDAITLSADCMDEELERALFGSDTEDGEEKVEGVRGC-GELNDDFILQAGKEPKEDLDEEDGEVDGNGGGDKFDFEAHMAMLIAKSEKSLGWAPARGWGHGELESMQRVTPSRHLGFRDSDD-EKTLELSRRSKKMGAAAKPHDATRMKESSGEGGMPKSGKHRSRFEEEFEDLLTEYGEEDIGGLEGTEEEAS-------------ARGGPGAVKEEEDRIEDILDNFLRAKIACTARQGKRDGHSELEVGRKGRPGSSG----SSTLVMEEDEIHEGAEEILETG------------ADDIEDFIAKHDYLGDRDGLVPWDCETILSTCSNLDNHPSLISEQRGRQGRKMHGK---HCSELPRLPEGRDVGLCPENAAEMVALSKKSGLPLGVLPLAPKK--AISNANTGSKRDKDEKVLDKRARKAAVKLARREGRARKKEMTQAFKEVEKVAGLQSRSGETAVNRSVFQFS 579
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02540.1 ID=NO08G02540.1|Name=NO08G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp ATGTACGCCACAGACATCAAGCTCCGCCCTCGATTAATCAACGTCTCGAA GCTAGCATCTTCTGCGTCGCTCCGGCTGGATCTTAAGTCAAATGGTACGG CACAGCATATGACCTCCTCCCTCATTGCCCACCATCGGGGCAAAATCAAG AAGCGCTTCATCGACCCTGTAAACTCCCAACACTTCCATCTGGTGCACCG CAGCCAGCGCGACGTCAAGTGCGACGATCTCGAGGCACCGCAGTATGTGC TGCTGCCAGGACGGCGCGGCAACGCAGCAGCCCGCGCCCAAACGGGCGAC GACTCCAAAGATAGCGACGAGGAAGCAGGCGAGTCAAGCAAGAAAATGCG ATGGCGAGACCATGTGAACGAGCTGGGCCTTCCTAATGACGGTTATGACT ACGGTAGACATTTGAAGACGATGGGAGGAGGGCGGTTTATTGCTGCTTCG GGAGAGGTTGGTAGTGCCTTGCCTGGGGATGGCATTTTTGAGCTGCCGGA AGACCCGGAGCATTGGAGAAAGGCAAGAACTGGGCAGGGCTCGAGGGATG AGGAGGGACAGAAGCTGCTGAAGCCGGTAGTGGATGCGATTACATTATCA GCCGATTGTATGGACGAGGATATGGAGGAGGCCTTGTTTGGGAGCGACGG GGACGAGGGGGCCGAGGAGGAGGGAGGAGTGGGGGGGATGTTCGAAGAGC TGAATGACGATTTTATCTTGCAAGCGGGTCGGGAACTGGATTCCGAGGGG GAGGGAGCGGGGGGAGGGTTTGATTTTGAGGCTCATATGGCCATGTTGAT TGCTAAAAGTGAGAAATCTTTGGGTTGGGCCCCGGCACGTGGATGGGAGG ACGGAGAACTAGAGAAGCTGCAGCAGTTGATTCCCCACAAGGATTTGGAG GGTTATGACACTGATGAAGTGGACGATGACGAGGAGGAAGCTGGGGCGAG GAGGAAGAGTGCAGCAGCGATGCGGCGCCATCGACCTTGGGGGGCACGGG CCGAGAATGGGTCCGGGGCAGGAGTTGTTTCAAGAAAGGACCATGCATCC ATGAAGGATGATTTTGAAGATTTGCTGGCCGAGTATAATGAGGATGACAT TGGCGAGCTGGAGGACCCAGAGGAGGCAGGGGCGAACACGCGGGGATTTA TGGATGTTGAAGGAGGAGGGGATGGAATGGGCGGCCCCGGCTGTGCGTAT ATTGAGCACATTTTGGATGACTTCTTGAGGGCCAAGATTGCCGAGATTGA TGAGGAGGAGGCACGTACGGAGGTGAGGGAGCATGCGGAGGGGCGGGGGG ACACTCCGAGGAGGAAGAGTGTTGGGTTGTTCGCCAGCAGTGGGGGACTG GCGGAAGAGGAGGGAGAGGAACCGGCTGAGGAATGGGAGGAGGCAGGGGA CGAGGAAGGGGTCACGGCTGGAGGGATGGGTGAGGCGGACGACATGGAGC AATTCATTGTCAAGCACAACTACCTCGGGGACCGGGATGGCCCTACCCCC TGGGACTGTGAGACCATACTCTCCACCTGCTCGAATCTGGACAACCACCC CAGCCTTATCATCGAGGAAGGGAGGCAACGAAAGGGAAAGAAAGGGAAGA GCAACATGTATCGTGGTAAGATGCCGGGCCTGCCTGAAGAAGAAAGAGGG CCCGAGAAAGCGGTGGCCATGGTTGCCCTCTCGAAGAAGAGTGGATTGCC CTTGGGGGTCCTGCCAATGGCGGAGAAAAAGAAGGTCGGCGTCGAGATCA TGAATGCGGGGAGCAAGCGCGATAAGGCGGAGACGGAAGAGGAGAAGCGG CTTCGAAAAGCCGCTGTGAAGCAGGCGCGGCGGGAGGGACGGGCAAAAAA GAAGGAAATGGCGCAAGCATTTAAGGTGGTGGAGAAGGTTGCCAATATCC ACTCTCGGAGTGGCGAGACTGCCGTGGCTCGGAGCGTCTTTCAGTATTCG TAG back to topprotein sequence of NO08G02540.1 >NO08G02540.1-protein ID=NO08G02540.1-protein|Name=NO08G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp MYATDIKLRPRLINVSKLASSASLRLDLKSNGTAQHMTSSLIAHHRGKIK KRFIDPVNSQHFHLVHRSQRDVKCDDLEAPQYVLLPGRRGNAAARAQTGD DSKDSDEEAGESSKKMRWRDHVNELGLPNDGYDYGRHLKTMGGGRFIAAS GEVGSALPGDGIFELPEDPEHWRKARTGQGSRDEEGQKLLKPVVDAITLS ADCMDEDMEEALFGSDGDEGAEEEGGVGGMFEELNDDFILQAGRELDSEG EGAGGGFDFEAHMAMLIAKSEKSLGWAPARGWEDGELEKLQQLIPHKDLE GYDTDEVDDDEEEAGARRKSAAAMRRHRPWGARAENGSGAGVVSRKDHAS MKDDFEDLLAEYNEDDIGELEDPEEAGANTRGFMDVEGGGDGMGGPGCAY IEHILDDFLRAKIAEIDEEEARTEVREHAEGRGDTPRRKSVGLFASSGGL AEEEGEEPAEEWEEAGDEEGVTAGGMGEADDMEQFIVKHNYLGDRDGPTP WDCETILSTCSNLDNHPSLIIEEGRQRKGKKGKSNMYRGKMPGLPEEERG PEKAVAMVALSKKSGLPLGVLPMAEKKKVGVEIMNAGSKRDKAETEEEKR LRKAAVKQARREGRAKKKEMAQAFKVVEKVANIHSRSGETAVARSVFQYS * back to topmRNA from alignment at chr8:723931..726418- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02540.1 ID=NO08G02540.1|Name=NO08G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp|location=Sequence derived from alignment at chr8:723931..726418- (Nannochloropsis oceanica) ATGTACGCCACAGACATCAAGCTCCGCCCTCGATTAATCAACGTCTCGAA
GCTAGCATCTTCTGCGTCGCTCCGGCTGGATCTTAAGTCAAATGGTACGG
CACAGCATATGACCTCCTCCCTCATTGCCCACCATCGGGTGGGGATGGAC
AAAGTTGCTAAACCACATCATTACTTTCGCTTCTCCACCGACCACAGGGC
AAAATCAAGAAGCGCTTCATCGACCCTGTAAACTCCCAACACTTCCATCT
GGTGCACCGCAGCCAGCGCGACGTCAAGTGCGACGATCTCGAGGCACCGC
AGTATGTGCTGCTGCCAGGACGGGTACGTACATCCTCCCCTCGACAATGC
TTGATCAGCAAATGCTGCATTTTCATTGTGGTATCCTGTCGAATCACGTG
TCTACTGCTCCTAAGTCAATCTAAACCTGAACGGAGTGCTCTTCGTACTA
TTTTCTATTCAGGTTGCCTATCCATTAGGCAAGGGCTCCCTCCAGTCTCA
CACTCCCAACTCTGCTCCTCTTCTGCCAGCCTGCTCGACTTTTGCCACAG
AGGCTCAGCATGCCCCATGTGTTCTCATCTTTCTTCCACTAAATGCGCCG
AAATTTTCATGATAGCTGACCTTAAATCCTGTCCTCTCAACCTCCACCAT
CCACACCCCTCCCAAACCACCCCCTACAAGCGCGGCAACGCAGCAGCCCG
CGCCCAAACGGGCGACGACTCCAAAGATAGCGACGAGGAAGCAGGCGAGT
CAAGCAAGAAAATGCGATGGCGAGACCATGTGAACGAGCTGGGCCTTCCT
AATGACGGTTATGACTACGGTAGACATTTGAAGACGATGGGAGGAGGGCG
GTTTATTGCTGCTTCGGGAGAGGTTGGTAGTGCCTTGCCTGGGGATGGCA
TTTTTGAGCTGCCGGAAGACCCGGAGCATTGGAGAAAGGCAAGAACTGGG
CAGGGCTCGAGGGATGAGGAGGGACAGAAGCTGCTGAAGCCGGTAGTGGA
TGCGATTACATTATCAGCCGATTGTATGGACGAGGATATGGAGGAGGCCT
TGTTTGGGAGCGACGGGGACGAGGGGGCCGAGGAGGAGGGAGGAGTGGGG
GGGATGTTCGAAGAGCTGAATGACGATTTTATCTTGCAAGCGGGTCGGGA
ACTGGATTCCGAGGGGGAGGGAGCGGGGGGAGGGTTTGATTTTGAGGCTC
ATATGGCCATGTTGATTGCTAAAAGTGAGAAATCTTTGGGTTGGGCCCCG
GCACGTGGATGGGAGGACGGAGAACTAGAGAAGCTGCAGCAGTTGATTCC
CCACAAGGATTTGGAGGGTTATGACACTGATGAAGTGGACGATGACGAGG
AGGAAGCTGGGGCGAGGAGGAAGAGTGCAGCAGCGATGCGGCGCCATCGA
CCTTGGGGGGCACGGGCCGAGAATGGGTCCGGGGCAGGAGTTGTTTCAAG
AAAGGACCATGCATCCATGAAGGATGATTTTGAAGATTTGCTGGCCGAGT
ATAATGAGGATGACATTGGCGAGCTGGAGGACCCAGAGGAGGCAGGGGCG
AACACGCGGGGATTTATGGATGTTGAAGGAGGAGGGGATGGAATGGGCGG
CCCCGGCTGTGCGTATATTGAGCACATTTTGGATGACTTCTTGAGGGCCA
AGATTGCCGAGATTGATGAGGAGGAGGCACGTACGGAGGTGAGGGAGCAT
GCGGAGGGGCGGGGGGACACTCCGAGGAGGAAGAGTGTTGGGTTGTTCGC
CAGCAGTGGGGGACTGGCGGAAGAGGAGGGAGAGGAACCGGCTGAGGAAT
GGGAGGAGGCAGGGGACGAGGAAGGGGTCACGGCTGGAGGGATGGGTGAG
GCGGACGACATGGAGCAATTCATTGTCAAGCACAACTACCTCGGGGTAAG
CGATTGCGCGGGGGGTGGGGAGGAAATTTAATGTGTGCGACCTCTCCCTT
CTTGCCTCTATGTAAAATGGCTCACACACACTCCTCTTCTGCCGCTTTCC
CTTTCCGCTATTAGGACCGGGATGGCCCTACCCCCTGGGACTGTGAGACC
ATACTCTCCACCTGCTCGAATCTGGACAACCACCCCAGCCTTATCATCGA
GGAAGGGAGGCAACGAAAGGGAAAGAAAGGGAAGAGCAACATGTATCGTG
GTAAGATGCCGGGCCTGCCTGAAGAAGAAAGAGGGCCCGAGAAAGCGGTG
GCCATGGTTGCCCTCTCGAAGAAGAGTGGATTGCCCTTGGGGGTCCTGCC
AATGGCGGAGAAAAAGAAGGTCGGCGTCGAGATCATGAATGCGGGGAGCA
AGCGCGATAAGGCGGAGACGGAAGAGGAGAAGCGGCTTCGAAAAGCCGCT
GTGAAGCAGGCGCGGCGGGAGGGACGGGCAAAAAAGAAGGAAATGGCGCA
AGCATTTAAGGTGGTGGAGAAGGTTGCCAATATCCACTCTCGGAGTGGCG
AGACTGCCGTGGCTCGGAGCGTCTTTCAGTATTCGTAG back to topCoding sequence (CDS) from alignment at chr8:723931..726418- >NO08G02540.1 ID=NO08G02540.1|Name=NO08G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at chr8:723931..726418- (Nannochloropsis oceanica) ATGTACGCCACAGACATCAAGCTCCGCCCTCGATTAATCAACGTCTCGAA GCTAGCATCTTCTGCGTCGCTCCGGCTGGATCTTAAGTCAAATGGTACGG CACAGCATATGACCTCCTCCCTCATTGCCCACCATCGGGGCAAAATCAAG AAGCGCTTCATCGACCCTGTAAACTCCCAACACTTCCATCTGGTGCACCG CAGCCAGCGCGACGTCAAGTGCGACGATCTCGAGGCACCGCAGTATGTGC TGCTGCCAGGACGGCGCGGCAACGCAGCAGCCCGCGCCCAAACGGGCGAC GACTCCAAAGATAGCGACGAGGAAGCAGGCGAGTCAAGCAAGAAAATGCG ATGGCGAGACCATGTGAACGAGCTGGGCCTTCCTAATGACGGTTATGACT ACGGTAGACATTTGAAGACGATGGGAGGAGGGCGGTTTATTGCTGCTTCG GGAGAGGTTGGTAGTGCCTTGCCTGGGGATGGCATTTTTGAGCTGCCGGA AGACCCGGAGCATTGGAGAAAGGCAAGAACTGGGCAGGGCTCGAGGGATG AGGAGGGACAGAAGCTGCTGAAGCCGGTAGTGGATGCGATTACATTATCA GCCGATTGTATGGACGAGGATATGGAGGAGGCCTTGTTTGGGAGCGACGG GGACGAGGGGGCCGAGGAGGAGGGAGGAGTGGGGGGGATGTTCGAAGAGC TGAATGACGATTTTATCTTGCAAGCGGGTCGGGAACTGGATTCCGAGGGG GAGGGAGCGGGGGGAGGGTTTGATTTTGAGGCTCATATGGCCATGTTGAT TGCTAAAAGTGAGAAATCTTTGGGTTGGGCCCCGGCACGTGGATGGGAGG ACGGAGAACTAGAGAAGCTGCAGCAGTTGATTCCCCACAAGGATTTGGAG GGTTATGACACTGATGAAGTGGACGATGACGAGGAGGAAGCTGGGGCGAG GAGGAAGAGTGCAGCAGCGATGCGGCGCCATCGACCTTGGGGGGCACGGG CCGAGAATGGGTCCGGGGCAGGAGTTGTTTCAAGAAAGGACCATGCATCC ATGAAGGATGATTTTGAAGATTTGCTGGCCGAGTATAATGAGGATGACAT TGGCGAGCTGGAGGACCCAGAGGAGGCAGGGGCGAACACGCGGGGATTTA TGGATGTTGAAGGAGGAGGGGATGGAATGGGCGGCCCCGGCTGTGCGTAT ATTGAGCACATTTTGGATGACTTCTTGAGGGCCAAGATTGCCGAGATTGA TGAGGAGGAGGCACGTACGGAGGTGAGGGAGCATGCGGAGGGGCGGGGGG ACACTCCGAGGAGGAAGAGTGTTGGGTTGTTCGCCAGCAGTGGGGGACTG GCGGAAGAGGAGGGAGAGGAACCGGCTGAGGAATGGGAGGAGGCAGGGGA CGAGGAAGGGGTCACGGCTGGAGGGATGGGTGAGGCGGACGACATGGAGC AATTCATTGTCAAGCACAACTACCTCGGGGACCGGGATGGCCCTACCCCC TGGGACTGTGAGACCATACTCTCCACCTGCTCGAATCTGGACAACCACCC CAGCCTTATCATCGAGGAAGGGAGGCAACGAAAGGGAAAGAAAGGGAAGA GCAACATGTATCGTGGTAAGATGCCGGGCCTGCCTGAAGAAGAAAGAGGG CCCGAGAAAGCGGTGGCCATGGTTGCCCTCTCGAAGAAGAGTGGATTGCC CTTGGGGGTCCTGCCAATGGCGGAGAAAAAGAAGGTCGGCGTCGAGATCA TGAATGCGGGGAGCAAGCGCGATAAGGCGGAGACGGAAGAGGAGAAGCGG CTTCGAAAAGCCGCTGTGAAGCAGGCGCGGCGGGAGGGACGGGCAAAAAA GAAGGAAATGGCGCAAGCATTTAAGGTGGTGGAGAAGGTTGCCAATATCC ACTCTCGGAGTGGCGAGACTGCCGTGGCTCGGAGCGTCTTTCAGTATTCG TAG back to top
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