NO08G02440.1, NO08G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02440.1
Unique NameNO08G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1585
Alignment locationchr8:707844..709551 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:707844..709551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02440.1 vs.
Match: WP_067018438.1 (N-carbamoylputrescine amidase [Marinomonas spartinae]; SBS35282.1 N-carbamoyl-D-amino acid hydrolase [Marinomonas spartinae])

HSP 1 Score: 385.2 bits (988), Expect = 2.000e-103
Identity = 186/295 (63.05%), Postives = 229/295 (77.63%), Query Frame = 0 
Query:   11 VKVAATQFAASMKLAENLIKGEALVREAARQGAKIILLQELFAGPYFCQEMTSGFLAWAEPVEESVVVKRFQALAAELQVVLPVSFYERAGNAYYNSVAMVDADGTLLGVYRKSHIPDSPGYFEKFYFTPGDSGFRVWKTRYAKLGVGICWDQWFPETARCLALQGAELLLFPTAIGSEPQDGAIDSRAHWRRVMQGHAGANMTPVIASNRVGVETPFSQDPGSACVRDSSITFYGNSFITDETGAILADANDHSEAVLVVAFDLAKIRQARASWGMFRDRRPALYKPLLTKDGI 306
            V VAATQ A S  + ENL K EA+VR+AA+QGA+IILLQELF  PYFC E++  F A A  +EE+   KRF ALA EL+VVLP S++E+AGN  YN+VAM+DADG+L+G YRK+HIPDS GY EK+YF+PGD+GF+VW TRYAK+G+GICWDQWFPETARC+ALQGAELL FPTAIGSEP    +DS+ HW++VMQGHA AN TPVIASNR+G ET        A  RD S+TF+G+SFI DETGA +A+A+  SE VLV  FDL  +   R +WG++RDRRP+LY  + T DG+
Sbjct:    4 VTVAATQMACSWNIEENLNKAEAIVRQAAQQGAQIILLQELFETPYFCIEISESFHALATTLEENTAFKRFSALAKELEVVLPFSWFEKAGNVRYNTVAMIDADGSLMGTYRKTHIPDSDGYLEKYYFSPGDTGFKVWNTRYAKIGIGICWDQWFPETARCMALQGAELLFFPTAIGSEPSQPELDSKPHWQQVMQGHAAANQTPVIASNRIGTET--------AKYRDLSLTFFGSSFIADETGAKVAEADRTSEGVLVHEFDLDHLAFQRQAWGLYRDRRPSLYHTIQTLDGV 290
The following BLAST results are available for this feature:
BLAST of NO08G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_067018438.12.000e-10363.05N-carbamoylputrescine amidase [Marinomonas spartin... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02440NO08G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02440.1NO08G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02440.1.cds1NO08G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02440.1.cds2NO08G02440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02440.1 ID=NO08G02440.1|Name=NO08G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
CCGGGATGGTTGTTGGGCTCCTGTCAGCATTGGGGATTGTTGAGTGTGTT
TGTGAAACATTTCATCATACATAGCCCTCAGCGCGTAGGAACTCCTCTCG
CTCCCTCGCTGAACAACTTTCTGCATACAGATGGACAGTGTACATGCCCA
AAAGACTAAGCTCTAGCTATTTCCACTCATTCTATTATAGCTACAGCATC
TCTCTACAGTACAACACATTACTCGCCGCCGCTCCTCTGAAAAAAGCCCT
CCTTCTCCCTCCTTCCTTCCATCCCTCGTCTGGCGGTCTATAGTTTGGCC
TCCTTCGCGCAATAATGTTATGCACACTCTGAATTGCACATACTCTGTCA
GACGCAAGAGGGAGCGATCATGGTTTCATTTTGTACGAATAGAGCCACCA
CCGAAGCTAATGGTGTTGAAGAGCCTGTATCGTTCAATGAATTAGAACGC
CTACCGACGACGAGCTGCCTGGTTCCTCGCTTCCCAATTTTGTTCCATCT
CCCAGTCTCAACCAGCCACTCCACCACAACCCATCCTCTAGGTGTAGCTT
GCCGCGACATTAGCACGTGGTGCCATGGCTTCCACGAATAAGTCGACGAC
CCCAGTGAAGGTAGCTGCCACTCAGTTTGCGGCGTCTATGAAGCTGGCGG
AAAACCTAATCAAGGGCGAGGCTTTGGTGAGGGAGGCCGCGCGACAGGGC
GCAAAGATCATCTTGCTGCAAGAGCTGTTTGCGGGCCCCTACTTTTGCCA
GGAAATGACAAGTGGATTCTTGGCCTGGGCCGAGCCAGTGGAGGAATCCG
TGGTGGTAAAGCGTTTCCAAGCATTGGCTGCGGAGCTACAGGTAGTACTA
CCCGTGAGCTTCTATGAGCGGGCGGGGAACGCCTACTACAACAGCGTAGC
GATGGTGGATGCGGACGGGACTCTGCTTGGTGTGTATCGCAAGTCGCATA
TTCCTGACTCGCCCGGCTACTTTGAAAAGTTTTATTTCACGCCCGGCGAC
AGCGGCTTTCGGGTCTGGAAGACGCGCTACGCAAAACTTGGCGTGGGTAT
TTGCTGGGACCAATGGTTTCCCGAGACGGCCCGGTGCTTGGCGTTGCAAG
GTGCGGAGCTGCTTTTATTCCCCACGGCCATAGGCTCCGAGCCCCAGGAC
GGTGCGATTGACTCCCGGGCACACTGGCGGCGGGTAATGCAGGGCCATGC
TGGCGCCAATATGACGCCCGTCATTGCCTCTAATCGCGTAGGCGTCGAAA
CGCCGTTCTCTCAAGACCCTGGCAGCGCCTGCGTGCGCGACTCCTCCATC
ACCTTCTATGGGAATTCCTTCATCACCGATGAGACAGGAGCCATCCTCGC
CGACGCAAATGACCACTCCGAAGCCGTGTTGGTAGTGGCCTTCGACCTTG
CCAAGATCCGGCAAGCCCGCGCGTCGTGGGGCATGTTTCGAGACCGACGC
CCGGCTTTGTATAAGCCTCTTTTGACCAAGGACGGCATCCTGATAGCGCC
CTTGTGGAAAGAAATACACAATACGTATTGAAAATTGTGCAGATAGAGGA
AAAAGAGATTTTCAAAATGAAATATAATCAGTAAC
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protein sequence of NO08G02440.1

>NO08G02440.1-protein ID=NO08G02440.1-protein|Name=NO08G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MASTNKSTTPVKVAATQFAASMKLAENLIKGEALVREAARQGAKIILLQE
LFAGPYFCQEMTSGFLAWAEPVEESVVVKRFQALAAELQVVLPVSFYERA
GNAYYNSVAMVDADGTLLGVYRKSHIPDSPGYFEKFYFTPGDSGFRVWKT
RYAKLGVGICWDQWFPETARCLALQGAELLLFPTAIGSEPQDGAIDSRAH
WRRVMQGHAGANMTPVIASNRVGVETPFSQDPGSACVRDSSITFYGNSFI
TDETGAILADANDHSEAVLVVAFDLAKIRQARASWGMFRDRRPALYKPLL
TKDGILIAPLWKEIHNTY*
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mRNA from alignment at chr8:707844..709551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02440.1 ID=NO08G02440.1|Name=NO08G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp|location=Sequence derived from alignment at chr8:707844..709551- (Nannochloropsis oceanica)
CCGGGATGGTTGTTGGGCTCCTGTCAGCATTGGGGATTGTTGAGTGTGTT
TGTGAAACATTTCATCATACATAGCCCTCAGCGCGTAGGAACTCCTCTCG
CTCCCTCGCTGAACAACTTTCTGCATACAGATGGACAGTGTACATGCCCA
AAAGACTAAGCTCTAGCTATTTCCACTCATTCTATTATAGCTACAGCATC
TCTCTACAGTACAACACATTACTCGCCGCCGCTCCTCTGAAAAAAGCCCT
CCTTCTCCCTCCTTCCTTCCATCCCTCGTCTGGCGGTCTATAGTTTGGCC
TCCTTCGCGCAATAATGTTATGCACACTCTGAATTGCACATACTCTGTCA
GACGCAAGAGGGAGCGATCATGGTTTCATTTTGTACGAATAGAGCCACCA
CCGAAGCTAATGGTGTTGAAGAGCCTGTATCGTTCAATGAATTAGAACGC
CTACCGACGACGAGCTGCCTGGTTCCTCGCTTCCCAATTTTGTTCCATCT
CCCAGTCTCAACCAGCCACTCCACCACAACCCATCCTCTAGGTGTAGCTT
GCCGCGACATTAGCACGTGGTGCCATGGCTTCCACGAATAAGTCGACGAC
CCCAGTGAAGGTAGCTGCCACTCAGTTTGCGGCGTCTATGAAGCTGGCGG
AAAACCTAATCAAGGGCGAGGCTTTGGTGAGGGAGGCCGCGCGACAGGGC
GCAAAGGTACGCGTATGCATGTGGTTGTGGCAGATAGGTGACATTTTTCC
AAAGGTAATAGAAAGCTTCAATTTATACAGGAAATTACCCTTTTTGAATT
TCTTTTCCGTCATTCCACGAAATCATAAGATCATCTTGCTGCAAGAGCTG
TTTGCGGGCCCCTACTTTTGCCAGGAAATGACAAGTGGATTCTTGGCCTG
GGCCGAGCCAGTGGAGGAATCCGTGGTGGTAAAGCGTTTCCAAGCATTGG
CTGCGGAGCTACAGGTAGTACTACCCGTGAGCTTCTATGAGCGGGCGGGG
AACGCCTACTACAACAGCGTAGCGATGGTGGATGCGGACGGGACTCTGCT
TGGTGTGTATCGCAAGTCGCATATTCCTGACTCGCCCGGCTACTTTGAAA
AGTTTTATTTCACGCCCGGCGACAGCGGCTTTCGGGTCTGGAAGACGCGC
TACGCAAAACTTGGCGTGGGTATTTGCTGGGACCAATGGTTTCCCGAGAC
GGCCCGGTGCTTGGCGTTGCAAGGTGCGGAGCTGCTTTTATTCCCCACGG
CCATAGGCTCCGAGCCCCAGGACGGTGCGATTGACTCCCGGGCACACTGG
CGGCGGGTAATGCAGGGCCATGCTGGCGCCAATATGACGCCCGTCATTGC
CTCTAATCGCGTAGGCGTCGAAACGCCGTTCTCTCAAGACCCTGGCAGCG
CCTGCGTGCGCGACTCCTCCATCACCTTCTATGGGAATTCCTTCATCACC
GATGAGACAGGAGCCATCCTCGCCGACGCAAATGACCACTCCGAAGCCGT
GTTGGTAGTGGCCTTCGACCTTGCCAAGATCCGGCAAGCCCGCGCGTCGT
GGGGCATGTTTCGAGACCGACGCCCGGCTTTGTATAAGCCTCTTTTGACC
AAGGACGGCATCCTGATAGCGCCCTTGTGGAAAGAAATACACAATACGTA
TTGAAAATTGTGCAGATAGAGGAAAAAGAGATTTTCAAAATGAAATATAA
TCAGTAAC
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Coding sequence (CDS) from alignment at chr8:707844..709551-

>NO08G02440.1 ID=NO08G02440.1|Name=NO08G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr8:707844..709551- (Nannochloropsis oceanica)
ATGGCTTCCACGAATAAGTCGACGACCCCAGTGAAGGTAGCTGCCACTCA
GTTTGCGGCGTCTATGAAGCTGGCGGAAAACCTAATCAAGGGCGAGGCTT
TGGTGAGGGAGGCCGCGCGACAGGGCGCAAAGATCATCTTGCTGCAAGAG
CTGTTTGCGGGCCCCTACTTTTGCCAGGAAATGACAAGTGGATTCTTGGC
CTGGGCCGAGCCAGTGGAGGAATCCGTGGTGGTAAAGCGTTTCCAAGCAT
TGGCTGCGGAGCTACAGGTAGTACTACCCGTGAGCTTCTATGAGCGGGCG
GGGAACGCCTACTACAACAGCGTAGCGATGGTGGATGCGGACGGGACTCT
GCTTGGTGTGTATCGCAAGTCGCATATTCCTGACTCGCCCGGCTACTTTG
AAAAGTTTTATTTCACGCCCGGCGACAGCGGCTTTCGGGTCTGGAAGACG
CGCTACGCAAAACTTGGCGTGGGTATTTGCTGGGACCAATGGTTTCCCGA
GACGGCCCGGTGCTTGGCGTTGCAAGGTGCGGAGCTGCTTTTATTCCCCA
CGGCCATAGGCTCCGAGCCCCAGGACGGTGCGATTGACTCCCGGGCACAC
TGGCGGCGGGTAATGCAGGGCCATGCTGGCGCCAATATGACGCCCGTCAT
TGCCTCTAATCGCGTAGGCGTCGAAACGCCGTTCTCTCAAGACCCTGGCA
GCGCCTGCGTGCGCGACTCCTCCATCACCTTCTATGGGAATTCCTTCATC
ACCGATGAGACAGGAGCCATCCTCGCCGACGCAAATGACCACTCCGAAGC
CGTGTTGGTAGTGGCCTTCGACCTTGCCAAGATCCGGCAAGCCCGCGCGT
CGTGGGGCATGTTTCGAGACCGACGCCCGGCTTTGTATAAGCCTCTTTTG
ACCAAGGACGGCATCCTGATAGCGCCCTTGTGGAAAGAAATACACAATAC
GTATTGA
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Synonyms
Publications