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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:700226..703728 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02410.1 vs.
Match: EWM26661.1 (cellulase 2 [Nannochloropsis gaditana]) HSP 1 Score: 880.6 bits (2274), Expect = 2.200e-252 Identity = 398/471 (84.50%), Postives = 434/471 (92.14%), Query Frame = 0
Query: 1 MSSAGRAKALIYSLIGVSVVAGVTVALLGIFGNDIFPNKDAGGNWEDPKLSYVKTPSLDQLRASFAPDTCFDTYDLTWTSGKDGQIYANTAPFFVKGMSWFGCEGHGYTFTGLNFTSMDTILNFFVQHKFNTVRIPVSVAFALAPKDTKPNQRFVGKSLKGKTIWEILGEAIDQAALRGLMVMLDMHTLGPQEPSDLWYDEQYQEADVLQAWTNIMSAYSAKWNVFALDLKNEPHGIATWGVKAPLTDYNKFYERSITHIHAKFPDWKGLYLVEGVQFNKETDKATDYPFWWGGNFGGAVNHPIKVPYPDVMDRVVYSPHVYGPDVYDHPYMNVPAEDLPKELVKVWDSQMGWLIPKLQKGMIIGEWGGSLKGRDDIVQRTLAKWLVKNCMANNVWWAINPESSDTGGIMSWNWKTYDKNRLDLVDSIFPDPTRFGIKRSKLCLHLGTYPNPECPIQPFKKPEIAQPEKLR 472
MSS GRAKAL++SLIGVSV+AG+TVALLGI+G IFP KD G W DP+LSYVKTPSLD+LRA+F PDTCFD++DL W+SGKDGQIYANTAPFFVKG+SWFGCEGHGYTFTGLNFT++DTILNFF+QHKFNTVRIPVSVAF LAPKD KPNQRFVGK LKGKTIWEIL E IDQAALRGLMVMLDMHTLGPQE +DLWYDEQY+EAD+LQAW+NIM+AYS KWNVFALDLKNEPHGIATWGV AP TDYNKFYER+I HIH +FP+WKGLY+VEGVQ+NKETDK TDYPFWWGGNFGGA+ HPI VP P+VM+RVVYSPHVYGPDVYDHPYMNVPA +L ELVKVWDSQMGWLIPKLQKGMIIGEWGGSLKGRD+IVQ LAKWLVKNCMANNVWWAINPESSDTGGIM+WNWKTYDK RLDLVDSIFPDPT+FGIK SKLCL GTYPNP+CP+QPF PE+A P+KLR
Sbjct: 1 MSSPGRAKALVFSLIGVSVLAGLTVALLGIYGQGIFPKKDKNG-WHDPRLSYVKTPSLDELRATFVPDTCFDSFDLAWSSGKDGQIYANTAPFFVKGISWFGCEGHGYTFTGLNFTTVDTILNFFLQHKFNTVRIPVSVAFGLAPKDFKPNQRFVGKGLKGKTIWEILDEVIDQAALRGLMVMLDMHTLGPQEATDLWYDEQYKEADILQAWSNIMAAYSIKWNVFALDLKNEPHGIATWGVSAPQTDYNKFYERAIAHIHTQFPNWKGLYMVEGVQYNKETDKVTDYPFWWGGNFGGAIQHPIYVPVPEVMNRVVYSPHVYGPDVYDHPYMNVPAAELANELVKVWDSQMGWLIPKLQKGMIIGEWGGSLKGRDEIVQTELAKWLVKNCMANNVWWAINPESSDTGGIMAWNWKTYDKRRLDLVDSIFPDPTQFGIKHSKLCLRFGTYPNPQCPVQPFHSPEVATPQKLR 470
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02410.1 ID=NO08G02410.1|Name=NO08G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3084bp CGACGTGTCATATGCCACGCAGCAACATATCTATCCGACGCTTACTTTGT TCCCAATCCTAAAACGTGATGATTGGCCTCTTCTCAGAACGAGACCAGGC AGATCTACAATACACGGCAGGATACGAAAAATATACCCGTGTGCAGCAGC ATACAACAGTACCAGCCAACTAGGTATCAGCTATCCGATAAGCTCTCCCT TCCTGGGCCGCCCGGTCGCTGTGCAGCCGGCTACGGCCCTTCCATGCTCT TTTCTTACAACGCCACACCATTGGCGCGCGGCACTCCTAGTAATATCCTT AACATGGACATGCCCTTGTTGTCGGACCAGTCACCTCCCCCTCACCACAT CTTCTTTGACCTTTCCCATCTTTCCCTCCCCGATCTACACCACCCTTGCA GATCTTTCTTCGACGCGACCCCACTCCATAGGCCAAAGCAGGTATCGGCA GGCAGCACTTTAAGCAGCCAAGCCAGGCCTTGCATTATCCACTTTCTCAA TTCACCATCCCCACAGACCCCTTGCGAAGCATGTCCTCTGCGGGAAGAGC CAAGGCTTTGATATACTCCCTCATCGGGGTGAGCGTGGTGGCTGGTGTGA CGGTGGCTCTTTTGGGCATCTTTGGCAACGATATTTTCCCTAACAAGGAT GCCGGTGGGAACTGGGAAGACCCGAAACTCAGCTACGTCAAGACGCCCAG CCTGGACCAGTTGAGGGCCAGCTTTGCCCCGGACACGTGCTTCGATACAT ACGACTTAACCTGGACCTCGGGCAAGGATGGGCAGATTTATGCAAACACG GCCCCCTTCTTCGTCAAGGGCATGAGTTGGTTTGGGTGCGAGGGCCACGG GTACACATTTACGGGCCTGAATTTTACGAGCATGGATACTATTCTAAACT TTTTTGTACAGCACAAGTTCAACACGGTGCGTATCCCCGTCTCGGTCGCC TTCGCCTTGGCGCCTAAAGATACTAAGCCAAACCAGCGCTTTGTCGGGAA AAGCTTGAAAGGTAAGACTATCTGGGAGATCCTCGGCGAGGCCATCGATC AGGCGGCCCTGCGCGGCCTCATGGTCATGCTGGACATGCACACGCTCGGG CCCCAGGAACCCTCCGACCTCTGGTACGACGAGCAGTATCAGGAGGCCGA CGTACTGCAGGCCTGGACCAACATTATGTCTGCCTACTCCGCCAAGTGGA ACGTTTTCGCGCTCGACTTAAAGAACGAGCCACATGGTATTGCCACTTGG GGCGTGAAGGCCCCGCTCACGGACTACAACAAGTTTTACGAGCGCTCCAT TACCCACATCCACGCAAAGTTCCCGGACTGGAAGGGGCTGTACCTGGTGG AGGGTGTGCAGTTCAACAAGGAGACAGACAAAGCCACGGACTACCCCTTC TGGTGGGGCGGCAACTTCGGGGGCGCGGTGAACCACCCCATCAAAGTGCC CTACCCCGACGTGATGGACCGCGTGGTTTATTCGCCGCACGTGTACGGTC CCGACGTGTATGATCACCCTTACATGAATGTTCCCGCTGAGGACCTACCC AAGGAGCTGGTCAAGGTATGGGACTCACAGATGGGCTGGCTGATTCCCAA ACTGCAGAAGGGCATGATTATCGGCGAGTGGGGGGGATCCCTGAAGGGCC GCGACGATATCGTGCAGCGCACGCTGGCCAAATGGCTGGTCAAGAACTGC ATGGCCAACAACGTGTGGTGGGCCATCAATCCCGAGTCTTCCGACACGGG AGGCATCATGTCCTGGAACTGGAAGACCTACGACAAGAATCGTCTGGACC TGGTCGACTCTATTTTCCCCGACCCCACCCGCTTCGGCATCAAGCGCTCC AAGCTCTGCCTGCACCTCGGCACCTACCCCAATCCCGAATGTCCCATCCA ACCTTTCAAGAAGCCTGAAATCGCCCAGCCCGAAAAACTGCGCGCCTAGA CAGTCAGCGATTGAGATCGGAGATCGTGAGATGGTGAGTGAGGAAGGAGA TAGAATGAGATGGATTTAGGGTTTGAAGGATCAATGGGGCCGAGTCGTGA TTTCTGCTGGACCTTGCCCATGACGAGAGCGGGCGAAAAGATGAAAGCCT GATAAGGGTGCCACCAGAGCGACGATGTTGGCCTCGTAGTGGCATCTTCC CACTGCAATGTACATGTATACATGTTAACGGGTATGCGACTGACGAGCTG TCCGCGGGAAAAAGAAGAGCAGGAGGGGGTGGATGTGGGGATGAATGGGA GGCAACACATACGCACCTCCCATTGCGACTGTTGCTGCAGTCAAAACTCA CACCCCATGACGAGGTCCCATTTGTTTAGTGAGCTGACGTTTGCTTTTCC AACTGACCTATGGAGATTGTAGTAAACTGACGAGAAGAGGAGGCAAGTAG TCGCCTTATGTTTCGTTCCTCCGCAAGCGCAGTGGATTGGTGGGTAAAAT CGCAGTGATGATTGCAGGGAGAAGAAAGTGGGTTGAAACAAAGTGTCTGT TTTAGTACGAATGAGAGCGAGGTACTTCTTCGCGCCTTTTCCGCCCATCT GCTCCGCTTGGTTCCTGGTGCATCCGAGTGCAAGGATGCGCAAGAGTCAG GGGAGAGTTGAAGACACCGCCGGGATCTACCATGCGAAGTGCCGAGATTG TCTGAAATAAAGTAGTAGGGAAGAAAAGACCGGAAGAAATACGATGCCGT TGTCATTTTGGTCAGCAGAGTAAACAGGGGAAAAGAATAAGAACAAGAAG AACAGGAATAAGATGAAGAATAAGCAGAATAAGAAGAACAAGAAGAACAA GGAGAGGAGCAGAAAGGAGGCAGGACACCAATCTTGATGTGTATATTAGC TTATCGAAACCTGGAAGAGTGCCACACACGTCAGAAAGGAATTATGAGAG TGGCTTTCGGTGCAGCTTTAATATGTGTGTGCGTGTGGGATGTCTGAGGA TGAGATGTGAGCGCAAAGACTGACTTTTGGGCAGCTATTCAGGTGGCCTT CTGTAGTTGGTAGCATCGGCCCTACTATTTTTTGCCAGCTAAAAGAAATC AATCATCAGCAGCAGCTATGACACGAAAATGGGA back to topprotein sequence of NO08G02410.1 >NO08G02410.1-protein ID=NO08G02410.1-protein|Name=NO08G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp MSSAGRAKALIYSLIGVSVVAGVTVALLGIFGNDIFPNKDAGGNWEDPKL SYVKTPSLDQLRASFAPDTCFDTYDLTWTSGKDGQIYANTAPFFVKGMSW FGCEGHGYTFTGLNFTSMDTILNFFVQHKFNTVRIPVSVAFALAPKDTKP NQRFVGKSLKGKTIWEILGEAIDQAALRGLMVMLDMHTLGPQEPSDLWYD EQYQEADVLQAWTNIMSAYSAKWNVFALDLKNEPHGIATWGVKAPLTDYN KFYERSITHIHAKFPDWKGLYLVEGVQFNKETDKATDYPFWWGGNFGGAV NHPIKVPYPDVMDRVVYSPHVYGPDVYDHPYMNVPAEDLPKELVKVWDSQ MGWLIPKLQKGMIIGEWGGSLKGRDDIVQRTLAKWLVKNCMANNVWWAIN PESSDTGGIMSWNWKTYDKNRLDLVDSIFPDPTRFGIKRSKLCLHLGTYP NPECPIQPFKKPEIAQPEKLRA* back to topmRNA from alignment at chr8:700226..703728+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02410.1 ID=NO08G02410.1|Name=NO08G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3503bp|location=Sequence derived from alignment at chr8:700226..703728+ (Nannochloropsis oceanica) CGACGTGTCATATGCCACGCAGCAACATATCTATCCGACGCTTACTTTGT
TCCCAATCCTAAAACGTGATGATTGGCCTCTTCTCAGAACGAGACCAGGC
AGATCTACAATACACGGCAGGATACGAAAAATATACCCGTGTGCAGCAGC
ATACAACAGTACCAGCCAACTAGGTATCAGCTATCCGATAAGCTCTCCCT
TCCTGGGCCGCCCGGTCGCTGTGCAGCCGGCTACGGCCCTTCCATGCTCT
TTTCTTACAACGCCACACCATTGGCGCGCGGCACTCCTAGTAATATCCTT
AACATGGACATGCCCTTGTTGTCGGACCAGTCACCTCCCCCTCACCACAT
CTTCTTTGACCTTTCCCATCTTTCCCTCCCCGATCTACACCACCCTTGCA
GATCTTTCTTCGACGCGACCCCACTCCATAGGCCAAAGCAGGTATCGGCA
GGCAGCACTTTAAGCAGCCAAGCCAGGCCTTGCATTATCCACTTTCTCAA
TTCACCATCCCCACAGACCCCTTGCGAAGCATGTCCTCTGCGGGAAGAGC
CAAGGCTTTGATATACTCCCTCATCGGGGTGAGCGTGGTGGCTGGTGTGA
CGGTGGCTCTTTTGGGCATCTTTGGCAACGATATTTTCCCTAACAAGGAT
GCCGGTGGGAACTGGGAAGACCCGAAACTCAGCTACGTCAAGACGCCCAG
CCTGGACCAGTTGAGGGCCAGCTTTGCCCCGGACACGTGCTTCGATACAT
ACGACTTAACCTGGACCTCGGGCAAGGATGGGCAGATTTATGCAAACACG
GCCCCCTTCTTCGTCAAGGGTAGGTTCTTGTGCATGCTATGAACGTGTGA
GTTTGTGTCTCTAAATAATGTGTTTGTTCTTGTTTCTATGCTCGTGTGTC
TATGGTTGTGTGTGAGTATGCTCTAATCCCAGACAGAACTCCTTCGACTC
CCGCCTGGGACGTTTAAACAGCCAATCACTCATACCGACACGAATTTATT
TTCTTCGTGCTCAATGAAAATTATATATCGCTCAATTCGTGTTCGATCGA
TGCACATTTTCGAATCCTTACACGTCCCCCTTCCCCTCCCCTTCTCCCCC
CTTTCCCCCTCTCCCCGCAGGCATGAGTTGGTTTGGGTGCGAGGGCCACG
GGTACACATTTACGGGCCTGAATTTTACGAGCATGGATACTATTCTAAAC
TTTTTTGTACAGCACAAGTTCAACACGGTGCGTATCCCCGTCTCGGTCGC
CTTCGCCTTGGCGCCTAAAGATACTAAGCCAAACCAGCGCTTTGTCGGGA
AAAGCTTGAAAGGTAAGACTATCTGGGAGATCCTCGGCGAGGCCATCGAT
CAGGCGGCCCTGCGCGGCCTCATGGTCATGCTGGACATGCACACGCTCGG
GCCCCAGGAACCCTCCGACCTCTGGTACGACGAGCAGTATCAGGAGGCCG
ACGTACTGCAGGCCTGGACCAACATTATGTCTGCCTACTCCGCCAAGTGG
AACGTTTTCGCGCTCGGTAAGAGTAGAGACGATAAAGGGACAAGATGAGA
GTCTTTGTAATCCTCTTTTCCGCGCGCCACCAAGCCAGCATTACTCACAG
CTCCCTCCCTGACTTACCTCCCTCGCCCCCGCAGACTTAAAGAACGAGCC
ACATGGTATTGCCACTTGGGGCGTGAAGGCCCCGCTCACGGACTACAACA
AGTTTTACGAGCGCTCCATTACCCACATCCACGCAAAGTTCCCGGACTGG
AAGGGGCTGTACCTGGTGGAGGGTGTGCAGTTCAACAAGGAGACAGACAA
AGCCACGGACTACCCCTTCTGGTGGGGCGGCAACTTCGGGGGCGCGGTGA
ACCACCCCATCAAAGTGCCCTACCCCGACGTGATGGACCGCGTGGTTTAT
TCGCCGCACGTGTACGGTCCCGACGTGTATGATCACCCTTACATGAATGT
TCCCGCTGAGGACCTACCCAAGGAGCTGGTCAAGGTATGGGACTCACAGA
TGGGCTGGCTGATTCCCAAACTGCAGAAGGGCATGATTATCGGCGAGTGG
GGGGGATCCCTGAAGGGCCGCGACGATATCGTGCAGCGCACGCTGGCCAA
ATGGCTGGTCAAGAACTGCATGGCCAACAACGTGTGGTGGGCCATCAATC
CCGAGTCTTCCGACACGGGAGGCATCATGTCCTGGAACTGGAAGACCTAC
GACAAGAATCGTCTGGACCTGGTCGACTCTATTTTCCCCGACCCCACCCG
CTTCGGCATCAAGCGCTCCAAGCTCTGCCTGCACCTCGGCACCTACCCCA
ATCCCGAATGTCCCATCCAACCTTTCAAGAAGCCTGAAATCGCCCAGCCC
GAAAAACTGCGCGCCTAGACAGTCAGCGATTGAGATCGGAGATCGTGAGA
TGGTGAGTGAGGAAGGAGATAGAATGAGATGGATTTAGGGTTTGAAGGAT
CAATGGGGCCGAGTCGTGATTTCTGCTGGACCTTGCCCATGACGAGAGCG
GGCGAAAAGATGAAAGCCTGATAAGGGTGCCACCAGAGCGACGATGTTGG
CCTCGTAGTGGCATCTTCCCACTGCAATGTACATGTATACATGTTAACGG
GTATGCGACTGACGAGCTGTCCGCGGGAAAAAGAAGAGCAGGAGGGGGTG
GATGTGGGGATGAATGGGAGGCAACACATACGCACCTCCCATTGCGACTG
TTGCTGCAGTCAAAACTCACACCCCATGACGAGGTCCCATTTGTTTAGTG
AGCTGACGTTTGCTTTTCCAACTGACCTATGGAGATTGTAGTAAACTGAC
GAGAAGAGGAGGCAAGTAGTCGCCTTATGTTTCGTTCCTCCGCAAGCGCA
GTGGATTGGTGGGTAAAATCGCAGTGATGATTGCAGGGAGAAGAAAGTGG
GTTGAAACAAAGTGTCTGTTTTAGTACGAATGAGAGCGAGGTACTTCTTC
GCGCCTTTTCCGCCCATCTGCTCCGCTTGGTTCCTGGTGCATCCGAGTGC
AAGGATGCGCAAGAGTCAGGGGAGAGTTGAAGACACCGCCGGGATCTACC
ATGCGAAGTGCCGAGATTGTCTGAAATAAAGTAGTAGGGAAGAAAAGACC
GGAAGAAATACGATGCCGTTGTCATTTTGGTCAGCAGAGTAAACAGGGGA
AAAGAATAAGAACAAGAAGAACAGGAATAAGATGAAGAATAAGCAGAATA
AGAAGAACAAGAAGAACAAGGAGAGGAGCAGAAAGGAGGCAGGACACCAA
TCTTGATGTGTATATTAGCTTATCGAAACCTGGAAGAGTGCCACACACGT
CAGAAAGGAATTATGAGAGTGGCTTTCGGTGCAGCTTTAATATGTGTGTG
CGTGTGGGATGTCTGAGGATGAGATGTGAGCGCAAAGACTGACTTTTGGG
CAGCTATTCAGGTGGCCTTCTGTAGTTGGTAGCATCGGCCCTACTATTTT
TTGCCAGCTAAAAGAAATCAATCATCAGCAGCAGCTATGACACGAAAATG
GGA back to topCoding sequence (CDS) from alignment at chr8:700226..703728+ >NO08G02410.1 ID=NO08G02410.1|Name=NO08G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr8:700226..703728+ (Nannochloropsis oceanica) ATGTCCTCTGCGGGAAGAGCCAAGGCTTTGATATACTCCCTCATCGGGGT GAGCGTGGTGGCTGGTGTGACGGTGGCTCTTTTGGGCATCTTTGGCAACG ATATTTTCCCTAACAAGGATGCCGGTGGGAACTGGGAAGACCCGAAACTC AGCTACGTCAAGACGCCCAGCCTGGACCAGTTGAGGGCCAGCTTTGCCCC GGACACGTGCTTCGATACATACGACTTAACCTGGACCTCGGGCAAGGATG GGCAGATTTATGCAAACACGGCCCCCTTCTTCGTCAAGGGCATGAGTTGG TTTGGGTGCGAGGGCCACGGGTACACATTTACGGGCCTGAATTTTACGAG CATGGATACTATTCTAAACTTTTTTGTACAGCACAAGTTCAACACGGTGC GTATCCCCGTCTCGGTCGCCTTCGCCTTGGCGCCTAAAGATACTAAGCCA AACCAGCGCTTTGTCGGGAAAAGCTTGAAAGGTAAGACTATCTGGGAGAT CCTCGGCGAGGCCATCGATCAGGCGGCCCTGCGCGGCCTCATGGTCATGC TGGACATGCACACGCTCGGGCCCCAGGAACCCTCCGACCTCTGGTACGAC GAGCAGTATCAGGAGGCCGACGTACTGCAGGCCTGGACCAACATTATGTC TGCCTACTCCGCCAAGTGGAACGTTTTCGCGCTCGACTTAAAGAACGAGC CACATGGTATTGCCACTTGGGGCGTGAAGGCCCCGCTCACGGACTACAAC AAGTTTTACGAGCGCTCCATTACCCACATCCACGCAAAGTTCCCGGACTG GAAGGGGCTGTACCTGGTGGAGGGTGTGCAGTTCAACAAGGAGACAGACA AAGCCACGGACTACCCCTTCTGGTGGGGCGGCAACTTCGGGGGCGCGGTG AACCACCCCATCAAAGTGCCCTACCCCGACGTGATGGACCGCGTGGTTTA TTCGCCGCACGTGTACGGTCCCGACGTGTATGATCACCCTTACATGAATG TTCCCGCTGAGGACCTACCCAAGGAGCTGGTCAAGGTATGGGACTCACAG ATGGGCTGGCTGATTCCCAAACTGCAGAAGGGCATGATTATCGGCGAGTG GGGGGGATCCCTGAAGGGCCGCGACGATATCGTGCAGCGCACGCTGGCCA AATGGCTGGTCAAGAACTGCATGGCCAACAACGTGTGGTGGGCCATCAAT CCCGAGTCTTCCGACACGGGAGGCATCATGTCCTGGAACTGGAAGACCTA CGACAAGAATCGTCTGGACCTGGTCGACTCTATTTTCCCCGACCCCACCC GCTTCGGCATCAAGCGCTCCAAGCTCTGCCTGCACCTCGGCACCTACCCC AATCCCGAATGTCCCATCCAACCTTTCAAGAAGCCTGAAATCGCCCAGCC CGAAAAACTGCGCGCCTAG back to top
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