NO08G02370.1, NO08G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02370.1
Unique NameNO08G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2583
Alignment locationchr8:691602..694940 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:691602..694940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02370.1 vs.
Match: EWM26722.1 (hypothetical protein Naga_100001g144 [Nannochloropsis gaditana])

HSP 1 Score: 436.4 bits (1121), Expect = 8.700e-119
Identity = 225/371 (60.65%), Postives = 282/371 (76.01%), Query Frame = 0
Query:    1 MYRRAALAAPAKVTAVASSPSSGEALTAGTSWKEWRTSAVLYVANALPASERRAILDRWGDITHKVTHE---ADAQLSTMRSDLYNAKAAEANALAEVGRLKQLISFHAKIKPEETMQATHPVLGQLVADMGYKKIYCASIKQLGDVVIWEQQRILRKERAHAIAREKARRSFPVKFPGIITLYQLPDGQYKLLDGQHRLAALKILADTGIINKDTNFCLVEVFALEKESEARALFLEINSAMPVKLIDMPDGIGSRPDIKCIIDGAMNRMLSRYPAFFKSSLNPKLPHINIDNLRDDLYQHHVVERQGLKTARELEEWLQQVNEILSQKHDKDWKLTLKGRNPLVVEKALDKARKGSFFLGMDHTWLGWD 369
            M R A    PA V   +S+      ++     K+     +L +A  LP S+R+ I+ +W      +  +    + QL  MR ++  AKA+  +AL EV RL++ I+F  KIKPE++   +HPVLGQL+ADMGYKK+YCA+I QL DV IWE+QRILR+ERA +IAREK R+SFPVK PGIITLYQL D QYKLLDGQHRLAALKILAD+GII+KD NFCL+EVF LEKESEARALFLEINSAMPVKLID+PDG G+RPDIK IIDGA++ ++S++PAFFKSSLNPKLPH+NIDN+RD L+QHH+VER G K+A EL +WLQ  NE LS KHD+DWK   KGRNPLV+EKA+ KA+KG F+LG+D+ WL ++
Sbjct:    1 MRRHATSVVPAAVNNFSSASLPKAKISLSRLCKD----LILRMATMLPVSDRKEIMAQWMAQESSIYTDIATVENQLLRMRLEVETAKASHVSALQEVERLRERITFQTKIKPEDS---SHPVLGQLIADMGYKKVYCATINQLADVPIWEKQRILRRERAESIAREKMRQSFPVKLPGIITLYQLADKQYKLLDGQHRLAALKILADSGIISKDNNFCLLEVFTLEKESEARALFLEINSAMPVKLIDLPDG-GARPDIKGIIDGAVDNLVSQFPAFFKSSLNPKLPHVNIDNMRDALFQHHIVERHGHKSAVELLKWLQDANENLSTKHDRDWKRIFKGRNPLVIEKAVAKAKKGGFYLGLDNRWLAFE 363          
The following BLAST results are available for this feature:
BLAST of NO08G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26722.18.700e-11960.65hypothetical protein Naga_100001g144 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02370NO08G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02370.1NO08G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02370.1.cds1NO08G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02370.1.cds2NO08G02370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02370.1.cds3NO08G02370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02370.1 ID=NO08G02370.1|Name=NO08G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2583bp
AAAGCCTCCGTGGGTATGCCTTGCGCTGCTTCCTGTTGATAGCATTGCGG
CACTAACGCACGCAAGTACCAGCAAGGAAGGAGACCATCCTTTTCTCTTT
TCATGACACGCCTCAAGACGCGATACCAAGCAACAGTTGCTCCGTACGCA
TGCATGCTTGAGACAGAGGATACGTAACCGTTTGCCATTTGCCGAAGCAG
ATAAAACACTAGCCACACATCATAAGGTTGTTGGTCGCTGATGAGCAGTT
ATAAAATCGATCTGTTCCGATCCCTCCCGGTCATACGATTACACTTTGTG
TACAATATGTAGATATATGTTTACATGTTTATACATTTTTTCAACCTTCA
GTATTTTTTCTCTTACTCTGCCGTTACATCCCACATTGCTTGATGATGTT
AATCTCAAGAGGCGCCACTTCTGTGTTCAAGATGAATTTATCGAATTAGA
ACAAGAGAGGTGCTCGCTCATTTCGATGCTCTGATCTTCTTTCTTTCTGA
CTGCTTGCTTGCACTATAGTTTACTTCCTGGTCAAATATCAACCAAACAA
CCTCATGTACCAAGCCAAGGGCACCTGGAAAACCTCGACGACATCCTCGG
CCACGATAGCCATGCATGTTAAGCCCGGGCCTTGGCGATGTGTCATGAAG
CCCACCAAGCCAGGTCGATTTTGACTGACCACCAACCTCATGCACACGAT
TTGTAGCGAAGTTGGTGACTGTCCTGTGTCGACGCCACATCACTGTATTT
GGAGCTGCGTGAACCCCGCCGCCCGTCCCAAGGGCACCTACGGATCTCGG
GGGAAAAGCAGGGTGGAATCGTTCCCCCAGTACCCTGTTGCTAAGAGGGT
GTACGCGTAAACAGGTCTCGGGGTTATACCAACACATATCAGGCACAGTC
GTAGGCAAAGGCCTCGGGGAGGGCGGCAATATCATGTACCGCCGTGCTGC
TTTGGCTGCACCGGCAAAGGTGACAGCGGTCGCCTCATCTCCATCAAGTG
GTGAAGCCTTGACCGCTGGGACAAGCTGGAAGGAGTGGCGCACCAGCGCA
GTCCTGTATGTGGCTAATGCCTTGCCTGCTAGCGAACGCCGTGCTATTTT
GGATCGATGGGGAGACATTACGCATAAGGTAACTCACGAAGCCGATGCAC
AACTTTCCACAATGCGATCGGATTTATACAATGCAAAGGCAGCCGAGGCT
AACGCGCTAGCAGAAGTGGGGCGACTCAAGCAATTGATTTCGTTTCATGC
CAAGATCAAGCCCGAGGAGACCATGCAGGCCACGCATCCTGTCTTGGGCC
AGCTCGTGGCCGACATGGGCTACAAGAAGATCTACTGTGCCTCCATCAAG
CAACTCGGGGATGTTGTGATCTGGGAGCAACAGCGTATTCTGCGGAAGGA
GAGAGCCCATGCAATAGCACGAGAGAAAGCCCGACGGTCGTTTCCAGTCA
AATTTCCCGGCATTATCACCCTCTACCAGCTGCCAGACGGGCAGTACAAG
CTTCTGGATGGACAACACAGGTTGGCGGCTTTAAAAATACTGGCTGACAC
AGGAATCATTAACAAAGACACGAATTTCTGCCTCGTGGAGGTGTTTGCCC
TTGAAAAAGAGTCGGAAGCCCGCGCCTTGTTCCTTGAAATTAACAGCGCC
ATGCCTGTGAAGCTCATCGACATGCCGGACGGAATAGGGTCGCGACCGGA
CATCAAATGTATCATCGACGGGGCCATGAATAGAATGCTGTCCAGATACC
CGGCCTTTTTCAAGAGCAGCCTCAATCCGAAATTGCCGCACATCAACATC
GACAACCTCCGGGACGATCTTTATCAGCACCACGTCGTAGAGAGGCAAGG
GCTGAAAACGGCCAGAGAGTTAGAAGAGTGGTTGCAGCAAGTGAACGAGA
TTCTTTCGCAAAAGCACGACAAGGATTGGAAGCTTACTCTCAAGGGTCGC
AATCCATTGGTGGTGGAAAAGGCACTCGACAAGGCGCGCAAAGGCAGTTT
TTTCCTAGGTATGGACCACACCTGGTTAGGTTGGGATGCATGTTGATGAG
GATAAGAAATTGCGGAAGTGGGAGATTTCTTGATGAATACCGCCCACTTA
CCCTAGCATGCTCGTTATTCTGGAGTCAAACCTTTTTAAAAAATGTGAGC
CCTTTTTTCGAGATGAGGCCTGAAGTTATCAGTCGCAGCGAAGGCTTAGG
ATTGCTGACGCGATCCCCAGTTTAGCTTGAGGTTTTGGATGGGATAACGG
TAGGATTTGTGGGAATTCCCTGATTGCCCTGATTGCCAATGCCTTTCAGC
TGTGACACATTCACATGGCATGTGAAGGCTGATGTCCTCTGTTGTCTTGA
AAGGGGAAATTTGTGCTTGTTAACAGAAGGGAGATAGGGCCCCTGAACAA
GGAAGATAAATAAGCTTCCGGAGATTTGGAGGTTCTCCTTTTTGAATCCA
AGCTCTTCTAGCAATAATGAGAGGCAAAGGCTGAATGTATTGAGGTGTAT
GGATGGGCAAGGGGAAGGTCAGACGTTTCATTTCCGAAATTGCTGTGTTT
GAAAGTAAAATGCAAATATGGAAGGACAAAGGA
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protein sequence of NO08G02370.1

>NO08G02370.1-protein ID=NO08G02370.1-protein|Name=NO08G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MYRRAALAAPAKVTAVASSPSSGEALTAGTSWKEWRTSAVLYVANALPAS
ERRAILDRWGDITHKVTHEADAQLSTMRSDLYNAKAAEANALAEVGRLKQ
LISFHAKIKPEETMQATHPVLGQLVADMGYKKIYCASIKQLGDVVIWEQQ
RILRKERAHAIAREKARRSFPVKFPGIITLYQLPDGQYKLLDGQHRLAAL
KILADTGIINKDTNFCLVEVFALEKESEARALFLEINSAMPVKLIDMPDG
IGSRPDIKCIIDGAMNRMLSRYPAFFKSSLNPKLPHINIDNLRDDLYQHH
VVERQGLKTARELEEWLQQVNEILSQKHDKDWKLTLKGRNPLVVEKALDK
ARKGSFFLGMDHTWLGWDAC*
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mRNA from alignment at chr8:691602..694940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02370.1 ID=NO08G02370.1|Name=NO08G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3339bp|location=Sequence derived from alignment at chr8:691602..694940- (Nannochloropsis oceanica)
AAAGCCTCCGTGGGTATGCCTTGCGCTGCTTCCTGTTGATAGCATTGCGG CACTAACGCACGCAAGTACCAGCAAGGAAGGAGACCATCCTTTTCTCTTT TCATGACACGCCTCAAGACGCGATACCAAGCAACAGTTGCTCCGTACGCA TGCATGCTTGAGACAGAGGATACGTAACCGTTTGCCATTTGCCGAAGCAG ATAAAACACTAGCCACACATCATAAGGTTGTTGGTCGCTGATGAGCAGTT ATAAAATCGATCTGTTCCGATCCCTCCCGGTCATACGATTACACTTTGTG TACAATATGTAGATATATGTTTACATGTTTATACATTTTTTCAACCTTCA GTATTTTTTCTCTTACTCTGCCGTTACATCCCACATTGCTTGATGATGTT AATCTCAAGAGGCGCCACTTCTGTGTTCAAGATGAATTTATCGAATTAGA ACAAGAGAGGTGCTCGCTCATTTCGATGCTCTGATCTTCTTTCTTTCTGA CTGCTTGCTTGCACTATAGTTTACTTCCTGGTCAAATATCAACCAAACAA CCTCATGTACCAAGCCAAGGGCACCTGGAAAACCTCGACGACATCCTCGG CCACGATAGCCATGCATGTTAAGCCCGGGCCTTGGCGATGTGTCATGAAG CCCACCAAGCCAGGTCGATTTTGACTGACCACCAACCTCATGCACACGAT TTGTAGCGAAGTTGGTGACTGTCCTGTGTCGACGCCACATCACTGTATTT GGAGCTGCGTGAACCCCGCCGCCCGTCCCAAGGGCACCTACGGATCTCGG GGGAAAAGCAGGGTGGAATCGTTCCCCCAGTACCCTGTTGCTAAGAGGGT GTACGCGTAAACAGGTCTCGGGGTTATACCAACACATATCAGGCACAGTC GTAGGCAAAGGCCTCGGGGAGGGCGGCAATATCATGTACCGCCGTGCTGC TTTGGCTGCACCGGCAAAGGTGACAGCGGTCGCCTCATCTCCATCAAGTG GTGAAGCCTTGACCGCTGGGACAAGCTGGAAGGAGTGGCGCACCAGCGCA GTCCTGTATGTGGCTAATGCCTTGCCTGCTAGCGAACGCCGTGCTATTTT GGATCGATGGGGAGACATTACGCATAAGGTAACTCACGAAGCCGATGCAC AACTTTCCACAATGCGATCGGATTTATACAATGCAAAGGCAGCCGAGGCT AACGCGCTAGCAGAAGTGGGGCGACTCAAGTAAGTACTATGTATGACAAT GCGGCACGGCACATTTACTTGCAATTTATCGTGTGGACCGTGCGGGTCAT GCTTTTTGGCGTGGCCCTCATTATATTTCTCGAGACGGTCGAAAATCTGT GGGTGCATCGGGGTGCATGTTGGGGCGTCGGTGCGAGAAGTGTACCATTT GTTGTCTAGAAGACTCCTGTTTCAGATTGGTTAGCGACTCATTAAATTCC ATCAAACCTCCTTCCTTTTTTACCATTTTCTCCTCAGGCATGTGCATGTA CGCGCCGTCCCGTTCCCCTGCAACTCCCTGCTTCATCAAATAATATTTAT TCTTTCCCCCCTTTTTTAAACCACAGAAAGCCTTTTAGTTGCAGCAACAA ACGGATAAGGATATATGTTGCTCCGTCCTTATGCTCTCCCTCCTTCCCAC CACACTCTCTCGAAATTTATCGATTTCACGACCTAAACACAGGCAATTGA TTTCGTTTCATGCCAAGATCAAGCCCGAGGAGACCATGCAGGCCACGCAT CCTGTCTTGGGCCAGCTCGTGGCCGACATGGGCTACAAGAAGATCTACTG TGCCTCCATCAAGCAACTCGGGGATGTTGTGATCTGGGAGCAACAGCGTA TTCTGCGGAAGGAGAGAGCCCATGCAATAGCACGAGAGAAAGCCCGACGG TCGTTTCCAGTCAAATTTCCCGGCATTATCACCCTCTACCAGCTGCCAGA CGGGCAGTACAAGCTTCTGGATGGACAACACAGGTTGGCGGCTTTAAAAA TACTGGCTGACACAGGAATCATTAACAAAGACACGAATTTCTGCCTCGTG GAGGTGTTTGCCCTTGAAAAAGAGTCGGAAGCCCGCGCCTTGTTCCTTGA AATTAACAGCGCCATGCCTGTGAAGCTCATCGACATGCCGGACGGAATAG GGTCGCGACCGGACATCAAATGTATCATCGACGGGGCCATGAATAGAATG CTGTCCAGATACCCGGCCTTTTTCAAGAGCAGCCTCAATCCGAAATTGCC GCACATCAACATCGACAACCTCCGGGACGATCTTTATCAGGTAAAGAATA AGAGGCAGAGGAGAGGGGAGGGGGAGAGAAGAGAGGCATGTATCTCAAAT CGGCAATCATAAACCGACCTGACTTGTTTTCAAGAATTAAATCGTAGGGA GGGATTTTAATGACACGTGCCGATAAGGGAAGTACAGAGAGTTATCCCCA TATGAGCACGGTTTACAGGTTTCGTTTTCTTCAACCACGTTGGGTGTCAA AGTGATCGATCTATTGCGATCGATAGTAACTGAAGCCTCTTTACGGACCA ATTCAGCCATCAACTGACAAATCATCAACACAGCACCACGTCGTAGAGAG GCAAGGGCTGAAAACGGCCAGAGAGTTAGAAGAGTGGTTGCAGCAAGTGA ACGAGATTCTTTCGCAAAAGCACGACAAGGATTGGAAGCTTACTCTCAAG GGTCGCAATCCATTGGTGGTGGAAAAGGCACTCGACAAGGCGCGCAAAGG CAGTTTTTTCCTAGGTATGGACCACACCTGGTTAGGTTGGGATGCATGTT GATGAGGATAAGAAATTGCGGAAGTGGGAGATTTCTTGATGAATACCGCC CACTTACCCTAGCATGCTCGTTATTCTGGAGTCAAACCTTTTTAAAAAAT GTGAGCCCTTTTTTCGAGATGAGGCCTGAAGTTATCAGTCGCAGCGAAGG CTTAGGATTGCTGACGCGATCCCCAGTTTAGCTTGAGGTTTTGGATGGGA TAACGGTAGGATTTGTGGGAATTCCCTGATTGCCCTGATTGCCAATGCCT TTCAGCTGTGACACATTCACATGGCATGTGAAGGCTGATGTCCTCTGTTG TCTTGAAAGGGGAAATTTGTGCTTGTTAACAGAAGGGAGATAGGGCCCCT GAACAAGGAAGATAAATAAGCTTCCGGAGATTTGGAGGTTCTCCTTTTTG AATCCAAGCTCTTCTAGCAATAATGAGAGGCAAAGGCTGAATGTATTGAG GTGTATGGATGGGCAAGGGGAAGGTCAGACGTTTCATTTCCGAAATTGCT GTGTTTGAAAGTAAAATGCAAATATGGAAGGACAAAGGA
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Coding sequence (CDS) from alignment at chr8:691602..694940-

>NO08G02370.1 ID=NO08G02370.1|Name=NO08G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr8:691602..694940- (Nannochloropsis oceanica)
ATGTACCGCCGTGCTGCTTTGGCTGCACCGGCAAAGGTGACAGCGGTCGC
CTCATCTCCATCAAGTGGTGAAGCCTTGACCGCTGGGACAAGCTGGAAGG
AGTGGCGCACCAGCGCAGTCCTGTATGTGGCTAATGCCTTGCCTGCTAGC
GAACGCCGTGCTATTTTGGATCGATGGGGAGACATTACGCATAAGGTAAC
TCACGAAGCCGATGCACAACTTTCCACAATGCGATCGGATTTATACAATG
CAAAGGCAGCCGAGGCTAACGCGCTAGCAGAAGTGGGGCGACTCAAGCAA
TTGATTTCGTTTCATGCCAAGATCAAGCCCGAGGAGACCATGCAGGCCAC
GCATCCTGTCTTGGGCCAGCTCGTGGCCGACATGGGCTACAAGAAGATCT
ACTGTGCCTCCATCAAGCAACTCGGGGATGTTGTGATCTGGGAGCAACAG
CGTATTCTGCGGAAGGAGAGAGCCCATGCAATAGCACGAGAGAAAGCCCG
ACGGTCGTTTCCAGTCAAATTTCCCGGCATTATCACCCTCTACCAGCTGC
CAGACGGGCAGTACAAGCTTCTGGATGGACAACACAGGTTGGCGGCTTTA
AAAATACTGGCTGACACAGGAATCATTAACAAAGACACGAATTTCTGCCT
CGTGGAGGTGTTTGCCCTTGAAAAAGAGTCGGAAGCCCGCGCCTTGTTCC
TTGAAATTAACAGCGCCATGCCTGTGAAGCTCATCGACATGCCGGACGGA
ATAGGGTCGCGACCGGACATCAAATGTATCATCGACGGGGCCATGAATAG
AATGCTGTCCAGATACCCGGCCTTTTTCAAGAGCAGCCTCAATCCGAAAT
TGCCGCACATCAACATCGACAACCTCCGGGACGATCTTTATCAGCACCAC
GTCGTAGAGAGGCAAGGGCTGAAAACGGCCAGAGAGTTAGAAGAGTGGTT
GCAGCAAGTGAACGAGATTCTTTCGCAAAAGCACGACAAGGATTGGAAGC
TTACTCTCAAGGGTCGCAATCCATTGGTGGTGGAAAAGGCACTCGACAAG
GCGCGCAAAGGCAGTTTTTTCCTAGGTATGGACCACACCTGGTTAGGTTG
GGATGCATGTTGA
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Synonyms
Publications