NO08G02360.1, NO08G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02360.1
Unique NameNO08G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1932
Alignment locationchr8:689187..691364 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:689187..691364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G02360.1 vs.
Match: EWM26733.1 (chaperone activity of bc1 complex- mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 725.7 bits (1872), Expect = 1.300e-205
Identity = 405/635 (63.78%), Postives = 470/635 (74.02%), Query Frame = 0 
Query:    1 MWSKDAMRILQGATLVLENMARENATAPRSSITQLVNTAKDVAAAAREQQQKRQH---HPPLLPSVSVGDAPA--ETTSLPPTQPKHTKAPSQPATCLPSAPP--PPALLHDTPKRRPFPTFYKSSDPPGPSSAPLPPRQTEKDT--------VAFSPQSQPKFPTQFDSVALPPSVPSRARLVSKEQSVPSTPLARVLGFGGLAARLAVSGMYEAVRRQIVA------APPTQSGSSRPSSQTLLSDTSAEHIAETLCKMRGAALKLGQMLSLQDEGLLPEPLAKALERVRQGADIMPRAQLHSQLVTELGVDWRARFAEFDETPVAAASIGQVHRGRTLDGREVAVKVQYPGVADSIDSDLRNLQRLVTYLNVLPPGLYVDEILDVAREELTLECDYRLEAQNQQRFQSLVSADPALAPHVLVPGVVEELSSRLVLTSDWVDGEPIDRVATQDQATRNRVARLVLLLTLRELFAWRFMQTDPNWSNFLYNQDTGKLSLLDFGASRNYDKKFVDKYLGLVWSAANQDTTRLMEVSRQLGFLTGDESPQMLHAHERAGLVVGEPFVTRGAFDFYGSNMTLRISKHGETFMKHRLTPPPREAYSLHRKLAGAFLLCIKLKAVMFCRDLLEEAHGMY 615
            M S DAMR+LQGATLV+ENM REN  APR  ++Q ++TA++VA  + +  ++  H    P   P  S  D P+   T+S    Q   +   S  A     A P  PP        R      Y++       + PL  R  E+D+         + S ++  +     ++V  P       +   KE+SVP++PL+RVLGFG LAARLAV+G YEAVRRQIV       AP + S  +RP  +TLLSD SAEHIAETLCKMRGAALKLGQM+SLQDEG+LPEPL KALERVRQGAD+MPRAQLH+QL  ELG  WRARF  F E PVAAASIGQVHR RT+DGR+VAVKVQYPGV DSI+SDL+NL+RLVTYLNVLPPGLYVDEILDVAREEL LECDY+LEAQNQ+RF+ LV +DPAL PHVLVPGVV +LSSR VLTS+W+ GEP+DRV   DQ  RNRVARL+LLLTLRELF WRFMQTDPNWSNFLY++ TGKL+LLDFGASR+Y K FVDKYL LVW+AAN+DT++LM  S QLGFLTGDES QML AHE AGLVVGEPFV    FDF+GSNMT+RIS HG+TFM HRLTPPPREAYSLHRKLAGAFLLCIKLKAV+ CRDLLEE H MY
Sbjct:    1 MRSNDAMRVLQGATLVVENMMRENVNAPRRMVSQFLDTAQNVAGRSPDMSKEGLHKIVRPD--PPASGEDFPSGKTTSSYFSEQANSSSTTSSMAAKTSDAEPVGPPTASGPVSSRN-----YEAQ------TRPLLARTREEDSSLLKMSTEASSSQEALRQALADSETVVAPFRDSPLPKYEQKERSVPASPLSRVLGFGSLAARLAVTGAYEAVRRQIVMTASDQEAPGSSSAEARP--RTLLSDRSAEHIAETLCKMRGAALKLGQMMSLQDEGILPEPLTKALERVRQGADVMPRAQLHAQLEAELGAGWRARFRTFGEKPVAAASIGQVHRARTIDGRDVAVKVQYPGVGDSIESDLKNLKRLVTYLNVLPPGLYVDEILDVAREELILECDYKLEAQNQERFKLLVESDPALVPHVLVPGVVSDLSSRQVLTSEWMTGEPVDRVVALDQDIRNRVARLILLLTLRELFDWRFMQTDPNWSNFLYDRSTGKLALLDFGASRSYQKAFVDKYLELVWAAANRDTSKLMIASHQLGFLTGDESTQMLRAHESAGLVVGEPFVNHEPFDFHGSNMTVRISHHGKTFMNHRLTPPPREAYSLHRKLAGAFLLCIKLKAVIPCRDLLEETHKMY 620
The following BLAST results are available for this feature:
BLAST of NO08G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26733.11.300e-20563.78chaperone activity of bc1 complex- mitochondrial-l... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02360NO08G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02360.1NO08G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02360.1.cds1NO08G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02360.1.cds2NO08G02360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02360.1 ID=NO08G02360.1|Name=NO08G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
ATGTGGTCCAAAGATGCCATGCGGATCCTACAGGGAGCCACCCTTGTCCT
CGAGAATATGGCGCGCGAGAATGCCACTGCCCCGCGCAGTTCCATCACAC
AGCTCGTCAATACGGCCAAAGATGTTGCGGCGGCAGCCCGGGAACAGCAG
CAAAAGCGCCAGCATCACCCACCATTGTTACCGTCCGTATCCGTGGGAGA
TGCTCCGGCCGAAACTACAAGTCTTCCGCCCACCCAGCCAAAACATACCA
AGGCACCATCACAACCCGCAACGTGCTTGCCATCAGCTCCCCCACCACCT
GCATTGCTCCACGACACGCCCAAACGTCGTCCTTTCCCCACTTTTTACAA
GTCGTCCGACCCGCCCGGCCCCTCATCGGCACCATTGCCACCTCGACAAA
CCGAAAAGGATACCGTTGCATTCTCGCCACAGTCGCAGCCAAAATTTCCT
ACACAGTTCGACTCCGTTGCTCTTCCTCCCTCCGTCCCATCTCGGGCCCG
CCTCGTTTCCAAGGAGCAGTCTGTGCCTTCCACACCCCTTGCCCGAGTGT
TGGGCTTCGGGGGCCTGGCCGCACGCCTGGCCGTGAGCGGCATGTATGAA
GCGGTCCGTCGGCAGATAGTGGCGGCGCCTCCGACACAGTCAGGGTCATC
AAGGCCCAGTTCACAGACTCTCTTATCGGACACGAGTGCAGAACACATCG
CTGAGACCTTGTGTAAGATGCGGGGCGCAGCCTTGAAGCTGGGGCAGATG
TTGAGCTTGCAAGACGAGGGGCTCCTCCCCGAGCCGCTGGCCAAGGCCCT
GGAGCGGGTACGACAGGGCGCAGACATAATGCCACGCGCTCAACTCCACT
CGCAGCTAGTCACCGAGCTAGGGGTAGATTGGCGGGCGCGCTTCGCCGAG
TTTGACGAGACACCCGTGGCGGCGGCTTCCATCGGGCAGGTCCATAGGGG
CCGAACGCTGGACGGGCGGGAGGTGGCGGTTAAGGTACAGTATCCGGGCG
TGGCGGACTCCATTGACAGCGATCTAAGGAACCTTCAGCGGCTGGTCACG
TATTTGAATGTGCTGCCCCCCGGCCTGTACGTGGACGAGATCTTGGACGT
GGCCCGGGAGGAGCTGACGCTGGAGTGCGACTACCGACTGGAGGCCCAGA
ATCAGCAGCGCTTCCAGAGCTTGGTCAGTGCCGATCCGGCCCTGGCACCG
CATGTCTTGGTACCGGGGGTTGTGGAGGAGCTCAGCAGCCGACTTGTGTT
GACATCCGACTGGGTGGACGGGGAGCCCATCGATCGCGTGGCCACCCAGG
ATCAGGCGACCCGAAATCGCGTGGCCCGGCTGGTCCTCTTGCTGACGCTG
CGCGAGCTGTTCGCCTGGCGGTTTATGCAGACGGACCCAAATTGGTCCAA
TTTTTTGTACAATCAGGACACGGGCAAGCTTTCCCTACTGGACTTTGGGG
CCTCTCGCAATTACGACAAAAAGTTTGTGGATAAGTACCTTGGGCTGGTG
TGGTCCGCCGCCAACCAAGACACTACACGACTCATGGAGGTTAGCCGGCA
GTTGGGTTTCTTGACCGGGGACGAGTCGCCTCAAATGCTGCATGCCCACG
AAAGAGCGGGGTTGGTGGTTGGGGAGCCATTTGTGACCCGAGGTGCATTC
GATTTCTACGGAAGTAATATGACGTTGCGCATTTCCAAGCACGGAGAGAC
CTTCATGAAACACCGCCTCACGCCCCCACCTCGAGAGGCTTATTCCCTTC
ACCGAAAATTGGCAGGGGCTTTCTTGCTTTGTATCAAGCTTAAAGCAGTC
ATGTTCTGCCGAGATTTATTGGAGGAAGCGCATGGGATGTACGACTGGGA
GGCACCGCAGGAGCAAGAAATGGTAGATGAGGAGGTAGCCAGCGGCACGG
TGTATCGCGAGGGCGTGTGCAATCGGAATTAA
back to top

protein sequence of NO08G02360.1

>NO08G02360.1-protein ID=NO08G02360.1-protein|Name=NO08G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MWSKDAMRILQGATLVLENMARENATAPRSSITQLVNTAKDVAAAAREQQ
QKRQHHPPLLPSVSVGDAPAETTSLPPTQPKHTKAPSQPATCLPSAPPPP
ALLHDTPKRRPFPTFYKSSDPPGPSSAPLPPRQTEKDTVAFSPQSQPKFP
TQFDSVALPPSVPSRARLVSKEQSVPSTPLARVLGFGGLAARLAVSGMYE
AVRRQIVAAPPTQSGSSRPSSQTLLSDTSAEHIAETLCKMRGAALKLGQM
LSLQDEGLLPEPLAKALERVRQGADIMPRAQLHSQLVTELGVDWRARFAE
FDETPVAAASIGQVHRGRTLDGREVAVKVQYPGVADSIDSDLRNLQRLVT
YLNVLPPGLYVDEILDVAREELTLECDYRLEAQNQQRFQSLVSADPALAP
HVLVPGVVEELSSRLVLTSDWVDGEPIDRVATQDQATRNRVARLVLLLTL
RELFAWRFMQTDPNWSNFLYNQDTGKLSLLDFGASRNYDKKFVDKYLGLV
WSAANQDTTRLMEVSRQLGFLTGDESPQMLHAHERAGLVVGEPFVTRGAF
DFYGSNMTLRISKHGETFMKHRLTPPPREAYSLHRKLAGAFLLCIKLKAV
MFCRDLLEEAHGMYDWEAPQEQEMVDEEVASGTVYREGVCNRN*
back to top

mRNA from alignment at chr8:689187..691364+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02360.1 ID=NO08G02360.1|Name=NO08G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at chr8:689187..691364+ (Nannochloropsis oceanica)
ATGTGGTCCAAAGATGCCATGCGGATCCTACAGGGAGCCACCCTTGTCCT
CGAGAATATGGCGCGCGAGGTATGTCGGAGATGGGTTTGTGAGCATGCCC
ACTCCCTTCCCCCCCCCCGTAGCCCCTCGGAGTGTACGTGGCTAAACGTC
CAAACATTATCCTTTTCTCGTTGGGTAATCGATCGTTTCCAAGTTGACCA
TCTCTGGGTATGGGGACGGCTGTACATGTTCTCTTATAGTCAATCGCTAC
AACGTTTAGGGCCGAGCTTTGTCTCAGGTGTCTCTCTCTTTCTTTCCATA
CCCTTTTTTTTACAGAATGCCACTGCCCCGCGCAGTTCCATCACACAGCT
CGTCAATACGGCCAAAGATGTTGCGGCGGCAGCCCGGGAACAGCAGCAAA
AGCGCCAGCATCACCCACCATTGTTACCGTCCGTATCCGTGGGAGATGCT
CCGGCCGAAACTACAAGTCTTCCGCCCACCCAGCCAAAACATACCAAGGC
ACCATCACAACCCGCAACGTGCTTGCCATCAGCTCCCCCACCACCTGCAT
TGCTCCACGACACGCCCAAACGTCGTCCTTTCCCCACTTTTTACAAGTCG
TCCGACCCGCCCGGCCCCTCATCGGCACCATTGCCACCTCGACAAACCGA
AAAGGATACCGTTGCATTCTCGCCACAGTCGCAGCCAAAATTTCCTACAC
AGTTCGACTCCGTTGCTCTTCCTCCCTCCGTCCCATCTCGGGCCCGCCTC
GTTTCCAAGGAGCAGTCTGTGCCTTCCACACCCCTTGCCCGAGTGTTGGG
CTTCGGGGGCCTGGCCGCACGCCTGGCCGTGAGCGGCATGTATGAAGCGG
TCCGTCGGCAGATAGTGGCGGCGCCTCCGACACAGTCAGGGTCATCAAGG
CCCAGTTCACAGACTCTCTTATCGGACACGAGTGCAGAACACATCGCTGA
GACCTTGTGTAAGATGCGGGGCGCAGCCTTGAAGCTGGGGCAGATGTTGA
GCTTGCAAGACGAGGGGCTCCTCCCCGAGCCGCTGGCCAAGGCCCTGGAG
CGGGTACGACAGGGCGCAGACATAATGCCACGCGCTCAACTCCACTCGCA
GCTAGTCACCGAGCTAGGGGTAGATTGGCGGGCGCGCTTCGCCGAGTTTG
ACGAGACACCCGTGGCGGCGGCTTCCATCGGGCAGGTCCATAGGGGCCGA
ACGCTGGACGGGCGGGAGGTGGCGGTTAAGGTACAGTATCCGGGCGTGGC
GGACTCCATTGACAGCGATCTAAGGAACCTTCAGCGGCTGGTCACGTATT
TGAATGTGCTGCCCCCCGGCCTGTACGTGGACGAGATCTTGGACGTGGCC
CGGGAGGAGCTGACGCTGGAGTGCGACTACCGACTGGAGGCCCAGAATCA
GCAGCGCTTCCAGAGCTTGGTCAGTGCCGATCCGGCCCTGGCACCGCATG
TCTTGGTACCGGGGGTTGTGGAGGAGCTCAGCAGCCGACTTGTGTTGACA
TCCGACTGGGTGGACGGGGAGCCCATCGATCGCGTGGCCACCCAGGATCA
GGCGACCCGAAATCGCGTGGCCCGGCTGGTCCTCTTGCTGACGCTGCGCG
AGCTGTTCGCCTGGCGGTTTATGCAGACGGACCCAAATTGGTCCAATTTT
TTGTACAATCAGGACACGGGCAAGCTTTCCCTACTGGACTTTGGGGCCTC
TCGCAATTACGACAAAAAGTTTGTGGATAAGTACCTTGGGCTGGTGTGGT
CCGCCGCCAACCAAGACACTACACGACTCATGGAGGTTAGCCGGCAGTTG
GGTTTCTTGACCGGGGACGAGTCGCCTCAAATGCTGCATGCCCACGAAAG
AGCGGGGTTGGTGGTTGGGGAGCCATTTGTGACCCGAGGTGCATTCGATT
TCTACGGAAGTAATATGACGTTGCGCATTTCCAAGCACGGAGAGACCTTC
ATGAAACACCGCCTCACGCCCCCACCTCGAGAGGCTTATTCCCTTCACCG
AAAATTGGCAGGGGCTTTCTTGCTTTGTATCAAGCTTAAAGCAGTCATGT
TCTGCCGAGATTTATTGGAGGAAGCGCATGGGATGTACGACTGGGAGGCA
CCGCAGGAGCAAGAAATGGTAGATGAGGAGGTAGCCAGCGGCACGGTGTA
TCGCGAGGGCGTGTGCAATCGGAATTAA
back to top

Coding sequence (CDS) from alignment at chr8:689187..691364+

>NO08G02360.1 ID=NO08G02360.1|Name=NO08G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at chr8:689187..691364+ (Nannochloropsis oceanica)
ATGTGGTCCAAAGATGCCATGCGGATCCTACAGGGAGCCACCCTTGTCCT
CGAGAATATGGCGCGCGAGAATGCCACTGCCCCGCGCAGTTCCATCACAC
AGCTCGTCAATACGGCCAAAGATGTTGCGGCGGCAGCCCGGGAACAGCAG
CAAAAGCGCCAGCATCACCCACCATTGTTACCGTCCGTATCCGTGGGAGA
TGCTCCGGCCGAAACTACAAGTCTTCCGCCCACCCAGCCAAAACATACCA
AGGCACCATCACAACCCGCAACGTGCTTGCCATCAGCTCCCCCACCACCT
GCATTGCTCCACGACACGCCCAAACGTCGTCCTTTCCCCACTTTTTACAA
GTCGTCCGACCCGCCCGGCCCCTCATCGGCACCATTGCCACCTCGACAAA
CCGAAAAGGATACCGTTGCATTCTCGCCACAGTCGCAGCCAAAATTTCCT
ACACAGTTCGACTCCGTTGCTCTTCCTCCCTCCGTCCCATCTCGGGCCCG
CCTCGTTTCCAAGGAGCAGTCTGTGCCTTCCACACCCCTTGCCCGAGTGT
TGGGCTTCGGGGGCCTGGCCGCACGCCTGGCCGTGAGCGGCATGTATGAA
GCGGTCCGTCGGCAGATAGTGGCGGCGCCTCCGACACAGTCAGGGTCATC
AAGGCCCAGTTCACAGACTCTCTTATCGGACACGAGTGCAGAACACATCG
CTGAGACCTTGTGTAAGATGCGGGGCGCAGCCTTGAAGCTGGGGCAGATG
TTGAGCTTGCAAGACGAGGGGCTCCTCCCCGAGCCGCTGGCCAAGGCCCT
GGAGCGGGTACGACAGGGCGCAGACATAATGCCACGCGCTCAACTCCACT
CGCAGCTAGTCACCGAGCTAGGGGTAGATTGGCGGGCGCGCTTCGCCGAG
TTTGACGAGACACCCGTGGCGGCGGCTTCCATCGGGCAGGTCCATAGGGG
CCGAACGCTGGACGGGCGGGAGGTGGCGGTTAAGGTACAGTATCCGGGCG
TGGCGGACTCCATTGACAGCGATCTAAGGAACCTTCAGCGGCTGGTCACG
TATTTGAATGTGCTGCCCCCCGGCCTGTACGTGGACGAGATCTTGGACGT
GGCCCGGGAGGAGCTGACGCTGGAGTGCGACTACCGACTGGAGGCCCAGA
ATCAGCAGCGCTTCCAGAGCTTGGTCAGTGCCGATCCGGCCCTGGCACCG
CATGTCTTGGTACCGGGGGTTGTGGAGGAGCTCAGCAGCCGACTTGTGTT
GACATCCGACTGGGTGGACGGGGAGCCCATCGATCGCGTGGCCACCCAGG
ATCAGGCGACCCGAAATCGCGTGGCCCGGCTGGTCCTCTTGCTGACGCTG
CGCGAGCTGTTCGCCTGGCGGTTTATGCAGACGGACCCAAATTGGTCCAA
TTTTTTGTACAATCAGGACACGGGCAAGCTTTCCCTACTGGACTTTGGGG
CCTCTCGCAATTACGACAAAAAGTTTGTGGATAAGTACCTTGGGCTGGTG
TGGTCCGCCGCCAACCAAGACACTACACGACTCATGGAGGTTAGCCGGCA
GTTGGGTTTCTTGACCGGGGACGAGTCGCCTCAAATGCTGCATGCCCACG
AAAGAGCGGGGTTGGTGGTTGGGGAGCCATTTGTGACCCGAGGTGCATTC
GATTTCTACGGAAGTAATATGACGTTGCGCATTTCCAAGCACGGAGAGAC
CTTCATGAAACACCGCCTCACGCCCCCACCTCGAGAGGCTTATTCCCTTC
ACCGAAAATTGGCAGGGGCTTTCTTGCTTTGTATCAAGCTTAAAGCAGTC
ATGTTCTGCCGAGATTTATTGGAGGAAGCGCATGGGATGTACGACTGGGA
GGCACCGCAGGAGCAAGAAATGGTAGATGAGGAGGTAGCCAGCGGCACGG
TGTATCGCGAGGGCGTGTGCAATCGGAATTAA
back to top
Synonyms
Publications