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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:670061..672367 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02300.1 vs.
Match: EWM26584.1 (hypothetical protein Naga_100001g136 [Nannochloropsis gaditana]) HSP 1 Score: 681.8 bits (1758), Expect = 2.500e-192 Identity = 436/777 (56.11%), Postives = 510/777 (65.64%), Query Frame = 0
Query: 1 MTAVRTPEARDLPGLDALLDVILGPKLAQLYGGDTALLERIECKLGMVLDRHHPEKVETFHEMVGMTKSPIIKEKNLEIFVKSIIESLVEDASRPPVLAAKP---KAPAPKAGGGGRGCASKKKHAKPAEGNDGRLAKRAKKPSSAVTNAAASKSSAADS-VSSLDEISRSSMSDDESAAASAPKKVAAPGPARKPAVTVESFDSVMADSDGQMRGQLHLVERCPTFVYSSWRDMDHDVYLFNFPMLGAAKREAHPNGVIAFFPGFGLYKEYTDKAFRSVAMLGDQPTKLRSREEIFAFLEKGTQMRSTAKGGSGEGARRKAYVAAWQFFQQYIFKEAVCTEDPFPPLARRVPSKSKKRSSTSST-PKKPRAHAASLLVALPPLPPAAPLTVPVPLPSTASTLEEKNGAGVVALASPGPPPLATTTLPTPPQLAAGSVAVAGATGGKKDLGQMSGSDGAPSPSVEEVPDEMVEGLEEGAAWATLPDPDDRSIRGLFSSLRWRLEQLEDVWEGGDQFVWTLKSSQSNIDNLCDDLFGDPGDPEADDWKRMVGSSLDKTRKKLEEKLRAMGTQG--VATSRPAYVHGRALLDIYSDLKDAVGGFEEGMEGEVEGWDSMDFPRRASAASIPAVVATDADADVEEEKMKENVGIPLAGEGKLEAVEKGMTEEGIFEAAEIEVEMEREEGQMREGTEEEESEITPLPVTEEDGDDQEKDGSVAAELPGGSMDEEGAGTSSSSNDVATISATPKPAHADKGHN---EEEEEERGEGGKDLVPV 768
M+ V P+ DLPGLD+LLDVILGP LA+LYG D ALLERIECKLGMVLDRHHPEKVE F+EMV MTKSP+IKEKNL++FVKSI+ +LVEDASRPP A+ P KA A + GG ++ A A G G KR K+ S AAASKSS ADS VSSLDEISRSS SDD A + K V RKP V +ES+DSVMADSD QMRGQLHLVERCP VYSSWRD DHDVYL+ FP L AAKREA G+IAFF GFGLYKE+T AF+S+ M GDQP++LRSRE+IFAFLEKG+Q+RSTAKGGSGEGARRKAYVA WQFFQ+ +FKEAV DPFPPLARRVP+K KKR+STSS+ PKKPR A S +PPLPPA+ LP VA+ +P PPP +T+ L PP + G + A + ++ S+GAPSP E D V G W T+PDP+DRSIRGLF+SLRWRL +LE+ WEGGDQFVWTLKSSQSNIDNLCD LFGD GDPEADDW+RMV SSLDK R+KLE+KLRA+G QG AT +PAYVHGRALLD+YS+LK+AV GFEEG E EVEGWDS+DFP R + P VA + A V E +P A E AE V + + EG EEE E EE+G +E G A G D G+G S VA P +++G N E+ +E G + L P+
Sbjct: 1 MSEVHVPDTGDLPGLDSLLDVILGPTLAELYGADIALLERIECKLGMVLDRHHPEKVEAFNEMVSMTKSPMIKEKNLQVFVKSIMTALVEDASRPPPPASAPTKAKASATRRVIGGNN--KRRSAAGKAGGGGGAPGKRVKRAS-----AAASKSSPADSDVSSLDEISRSSSSDDGDAGRNK-KSVTI----RKPVVAIESYDSVMADSDWQMRGQLHLVERCPALVYSSWRDADHDVYLYQFPQLAAAKREA--KGIIAFFMGFGLYKEFTAAAFKSIVMPGDQPSRLRSREDIFAFLEKGSQLRSTAKGGSGEGARRKAYVATWQFFQKNVFKEAVTEADPFPPLARRVPNKGKKRASTSSSMPKKPRPRAPS--APVPPLPPAS-------LP--------------VAVPAPSPPPPSTSALSPPPPSSLGMTSTGEAKSKDEAGVTVTSSEGAPSPLGEVAQDGAV--ATAGGVWNTMPDPEDRSIRGLFASLRWRLLRLEETWEGGDQFVWTLKSSQSNIDNLCDSLFGDAGDPEADDWRRMVSSSLDKARRKLEDKLRALGGQGGNAATGKPAYVHGRALLDVYSELKEAVAGFEEGKEAEVEGWDSLDFPVRGLTFA-PTTVAATSAASVSE----PGAVLPSA------------------EGAEPAVAGKEDS---PEGAEEENRE-----HGEENGGTREFGGGDRAREVG---DVHGSGEESPPAGVA-------PEQSEEGKNVRPEQSGKEEDVGKERLEPI 697
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02300.1 ID=NO08G02300.1|Name=NO08G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp ATGACAGCGGTACGGACGCCCGAGGCAAGAGATCTGCCGGGCCTGGATGC ATTGCTGGACGTGATTTTGGGACCCAAGCTGGCTCAACTGTATGGCGGCG ACACGGCCCTTCTTGAGCGCATCGAGTGCAAGCTGGGCATGGTCTTGGAC AGGCATCACCCGGAAAAGGTGGAGACCTTCCACGAGATGGTCGGCATGAC CAAATCACCCATCATCAAGGAGAAGAACCTCGAGATCTTTGTCAAGAGCA TCATTGAGAGCCTCGTGGAGGATGCCTCCCGGCCCCCAGTACTTGCAGCA AAGCCTAAGGCACCTGCGCCCAAGGCAGGCGGCGGTGGTCGTGGCTGTGC GAGCAAAAAGAAGCATGCCAAGCCAGCAGAAGGAAACGATGGGAGGCTGG CCAAGCGTGCCAAGAAGCCGTCGTCCGCAGTGACAAATGCCGCGGCGTCC AAGTCCTCGGCGGCAGACAGCGTATCTTCTCTGGACGAAATAAGCAGGTC CAGCATGTCGGACGACGAAAGCGCTGCCGCCTCCGCACCGAAGAAGGTCG CTGCCCCTGGTCCTGCGCGCAAGCCGGCTGTAACGGTGGAGAGCTTTGAC AGCGTGATGGCGGACTCGGACGGCCAGATGCGAGGCCAGCTGCATCTGGT GGAGCGTTGCCCAACCTTCGTGTACAGCTCCTGGCGCGATATGGACCATG ACGTTTACTTGTTCAATTTCCCTATGCTGGGAGCGGCCAAGCGTGAGGCG CACCCTAATGGCGTCATTGCCTTCTTTCCCGGCTTCGGTCTCTACAAGGA ATATACGGATAAGGCCTTCCGTAGCGTGGCCATGCTTGGCGACCAGCCCA CGAAGCTGCGCTCACGGGAGGAGATCTTCGCTTTCCTGGAGAAGGGCACA CAGATGCGCTCCACGGCCAAGGGCGGCAGCGGGGAGGGGGCGCGTCGCAA GGCCTACGTGGCAGCCTGGCAGTTCTTTCAGCAATATATCTTCAAGGAGG CTGTCTGCACCGAGGACCCTTTCCCCCCTCTCGCCCGCCGCGTCCCCAGC AAGAGCAAGAAGCGCAGCTCCACCTCCTCAACCCCCAAGAAGCCCCGCGC CCATGCCGCCTCTTTGCTCGTAGCCTTGCCACCACTCCCACCAGCGGCAC CTCTGACCGTACCTGTCCCCTTGCCGTCCACCGCGTCGACGTTGGAGGAG AAAAATGGTGCTGGTGTAGTTGCGTTGGCTTCCCCGGGACCACCGCCCCT AGCAACCACCACCCTGCCCACACCGCCGCAGCTAGCAGCAGGCTCAGTGG CGGTAGCAGGGGCGACAGGAGGAAAGAAAGATCTAGGACAAATGTCGGGG TCGGACGGCGCACCTTCGCCATCAGTGGAGGAGGTGCCTGACGAGATGGT GGAGGGACTGGAAGAGGGGGCCGCGTGGGCCACGCTGCCCGACCCTGACG ACCGGTCGATCCGGGGCTTGTTTTCTTCATTGCGCTGGCGGCTAGAGCAG CTGGAGGACGTTTGGGAGGGTGGGGACCAATTTGTGTGGACCCTCAAGAG TTCGCAGAGCAACATTGACAATTTGTGTGATGACCTTTTCGGGGACCCGG GAGATCCCGAAGCGGACGACTGGAAGCGGATGGTGGGCAGTAGCTTGGAC AAGACGCGGAAGAAACTCGAGGAGAAGCTGCGGGCTATGGGGACTCAGGG GGTTGCGACGAGTAGGCCGGCCTATGTGCATGGAAGGGCCTTGTTGGACA TTTACTCAGATTTGAAGGATGCGGTAGGGGGTTTCGAGGAAGGGATGGAG GGAGAGGTGGAAGGATGGGACTCCATGGACTTCCCACGGCGTGCCTCTGC CGCCTCGATTCCTGCCGTTGTGGCTACTGATGCTGATGCCGATGTGGAGG AGGAGAAAATGAAGGAAAACGTCGGAATACCTTTGGCCGGTGAGGGGAAG TTAGAGGCCGTGGAGAAAGGAATGACGGAGGAAGGGATTTTCGAGGCGGC GGAGATAGAAGTGGAGATGGAAAGGGAAGAGGGGCAGATGAGGGAGGGGA CAGAGGAGGAGGAAAGCGAGATAACGCCCCTCCCAGTTACTGAAGAGGAC GGGGACGACCAGGAGAAGGACGGTTCCGTGGCGGCGGAGCTCCCGGGAGG CTCCATGGATGAGGAGGGGGCAGGCACCTCCTCCTCTTCCAACGATGTGG CCACCATCTCTGCCACTCCTAAGCCCGCGCACGCTGATAAAGGCCATAAT GAGGAGGAAGAGGAGGAGAGGGGGGAGGGGGGGAAGGATTTAGTGCCTGT GCCCTAA back to topprotein sequence of NO08G02300.1 >NO08G02300.1-protein ID=NO08G02300.1-protein|Name=NO08G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=769bp MTAVRTPEARDLPGLDALLDVILGPKLAQLYGGDTALLERIECKLGMVLD RHHPEKVETFHEMVGMTKSPIIKEKNLEIFVKSIIESLVEDASRPPVLAA KPKAPAPKAGGGGRGCASKKKHAKPAEGNDGRLAKRAKKPSSAVTNAAAS KSSAADSVSSLDEISRSSMSDDESAAASAPKKVAAPGPARKPAVTVESFD SVMADSDGQMRGQLHLVERCPTFVYSSWRDMDHDVYLFNFPMLGAAKREA HPNGVIAFFPGFGLYKEYTDKAFRSVAMLGDQPTKLRSREEIFAFLEKGT QMRSTAKGGSGEGARRKAYVAAWQFFQQYIFKEAVCTEDPFPPLARRVPS KSKKRSSTSSTPKKPRAHAASLLVALPPLPPAAPLTVPVPLPSTASTLEE KNGAGVVALASPGPPPLATTTLPTPPQLAAGSVAVAGATGGKKDLGQMSG SDGAPSPSVEEVPDEMVEGLEEGAAWATLPDPDDRSIRGLFSSLRWRLEQ LEDVWEGGDQFVWTLKSSQSNIDNLCDDLFGDPGDPEADDWKRMVGSSLD KTRKKLEEKLRAMGTQGVATSRPAYVHGRALLDIYSDLKDAVGGFEEGME GEVEGWDSMDFPRRASAASIPAVVATDADADVEEEKMKENVGIPLAGEGK LEAVEKGMTEEGIFEAAEIEVEMEREEGQMREGTEEEESEITPLPVTEED GDDQEKDGSVAAELPGGSMDEEGAGTSSSSNDVATISATPKPAHADKGHN EEEEEERGEGGKDLVPVP* back to topmRNA from alignment at chr8:670061..672367- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02300.1 ID=NO08G02300.1|Name=NO08G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp|location=Sequence derived from alignment at chr8:670061..672367- (Nannochloropsis oceanica) ATGACAGCGGTACGGACGCCCGAGGCAAGAGATCTGCCGGGCCTGGATGC
ATTGCTGGACGTGATTTTGGGACCCAAGCTGGCTCAACTGTATGGCGGCG
ACACGGCCCTTCTTGAGCGCATCGAGTGCAAGCTGGGCATGGTCTTGGAC
AGGCATCACCCGGAAAAGGTGGAGACCTTCCACGAGATGGTCGGCATGAC
CAAATCACCCATCATCAAGGAGAAGAACCTCGAGATCTTTGTCAAGAGCA
TCATTGAGAGCCTCGTGGAGGATGCCTCCCGGCCCCCAGTACTTGCAGCA
AAGCCTAAGGCACCTGCGCCCAAGGCAGGCGGCGGTGGTCGTGGCTGTGC
GAGCAAAAAGAAGCATGCCAAGCCAGCAGAAGGAAACGATGGGAGGCTGG
CCAAGCGTGCCAAGAAGCCGTCGTCCGCAGTGACAAATGCCGCGGCGTCC
AAGTCCTCGGCGGCAGACAGCGTATCTTCTCTGGACGAAATAAGCAGGTC
CAGCATGTCGGACGACGAAAGCGCTGCCGCCTCCGCACCGAAGAAGGTCG
CTGCCCCTGGTCCTGCGCGCAAGCCGGCTGTAACGGTGGAGAGCTTTGAC
AGCGTGATGGCGGACTCGGACGGCCAGATGCGAGGCCAGCTGCATCTGGT
GGAGCGTTGCCCAACCTTCGTGTACAGCTCCTGGCGCGATATGGACCATG
ACGTTTACTTGTTCAATTTCCCTATGCTGGGAGCGGCCAAGCGTGAGGCG
CACCCTAATGGCGTCATTGCCTTCTTTCCCGGCTTCGGTCTCTACAAGGA
ATATACGGATAAGGCCTTCCGTAGCGTGGCCATGCTTGGCGACCAGCCCA
CGAAGCTGCGCTCACGGGAGGAGATCTTCGCTTTCCTGGAGAAGGGCACA
CAGATGCGCTCCACGGCCAAGGGCGGCAGCGGGGAGGGGGCGCGTCGCAA
GGCCTACGTGGCAGCCTGGCAGTTCTTTCAGCAATATATCTTCAAGGAGG
CTGTCTGCACCGAGGACCCTTTCCCCCCTCTCGCCCGCCGCGTCCCCAGC
AAGAGCAAGAAGCGCAGCTCCACCTCCTCAACCCCCAAGAAGCCCCGCGC
CCATGCCGCCTCTTTGCTCGTAGCCTTGCCACCACTCCCACCAGCGGCAC
CTCTGACCGTACCTGTCCCCTTGCCGTCCACCGCGTCGACGTTGGAGGAG
AAAAATGGTGCTGGTGTAGTTGCGTTGGCTTCCCCGGGACCACCGCCCCT
AGCAACCACCACCCTGCCCACACCGCCGCAGCTAGCAGCAGGCTCAGTGG
CGGTAGCAGGGGCGACAGGAGGAAAGAAAGATCTAGGACAAATGTCGGGG
TCGGACGGCGCACCTTCGCCATCAGTGGAGGAGGTGCCTGACGAGATGGT
GGAGGGACTGGAAGAGGGGGCCGCGTGGGCCACGCTGCCCGACCCTGACG
ACCGGTCGATCCGGGGCTTGTTTTCTTCATTGCGCTGGCGGCTAGAGCAG
CTGGAGGACGTTTGGGAGGGTGGGGACCAATTTGTGTGGACCCTCAAGAG
TTCGCAGAGCAACATTGACAATTTGTGTGATGACCTTTTCGGGGACCCGG
GAGATCCCGAAGCGGACGACTGGAAGCGGATGGTGGGCAGTAGCTTGGAC
AAGACGCGGAAGAAACTCGAGGAGAAGCTGCGGGCTATGGGGACTCAGGG
GGTTGCGACGAGTAGGCCGGCCTATGTGCATGGAAGGGCCTTGTTGGACA
TTTACTCAGATTTGAAGGATGCGGTAGGGGGTTTCGAGGAAGGGATGGAG
GGAGAGGTGGAAGGATGGGACTCCATGGACTTCCCACGGCGTGCCTCTGC
CGCCTCGATTCCTGCCGTTGTGGCTACTGATGCTGATGCCGATGTGGAGG
AGGAGAAAATGAAGGAAAACGTCGGAATACCTTTGGCCGGTGAGGGGAAG
TTAGAGGCCGTGGAGAAAGGAATGACGGAGGAAGGGATTTTCGAGGCGGC
GGAGATAGAAGTGGAGATGGAAAGGGAAGAGGGGCAGATGAGGGAGGGGA
CAGAGGAGGAGGAAAGCGAGATAACGCCCCTCCCAGTTACTGAAGAGGAC
GGGGACGACCAGGAGAAGGACGGTTCCGTGGCGGCGGAGCTCCCGGGAGG
CTCCATGGATGAGGAGGGGGCAGGCACCTCCTCCTCTTCCAACGATGTGG
CCACCATCTCTGCCACTCCTAAGCCCGCGCACGCTGATAAAGGCCATAAT
GAGGAGGAAGAGGAGGAGAGGGGGGAGGGGGGGAAGGATTTAGTGCCTGT
GCCCTAA back to topCoding sequence (CDS) from alignment at chr8:670061..672367- >NO08G02300.1 ID=NO08G02300.1|Name=NO08G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=2307bp|location=Sequence derived from alignment at chr8:670061..672367- (Nannochloropsis oceanica) ATGACAGCGGTACGGACGCCCGAGGCAAGAGATCTGCCGGGCCTGGATGC ATTGCTGGACGTGATTTTGGGACCCAAGCTGGCTCAACTGTATGGCGGCG ACACGGCCCTTCTTGAGCGCATCGAGTGCAAGCTGGGCATGGTCTTGGAC AGGCATCACCCGGAAAAGGTGGAGACCTTCCACGAGATGGTCGGCATGAC CAAATCACCCATCATCAAGGAGAAGAACCTCGAGATCTTTGTCAAGAGCA TCATTGAGAGCCTCGTGGAGGATGCCTCCCGGCCCCCAGTACTTGCAGCA AAGCCTAAGGCACCTGCGCCCAAGGCAGGCGGCGGTGGTCGTGGCTGTGC GAGCAAAAAGAAGCATGCCAAGCCAGCAGAAGGAAACGATGGGAGGCTGG CCAAGCGTGCCAAGAAGCCGTCGTCCGCAGTGACAAATGCCGCGGCGTCC AAGTCCTCGGCGGCAGACAGCGTATCTTCTCTGGACGAAATAAGCAGGTC CAGCATGTCGGACGACGAAAGCGCTGCCGCCTCCGCACCGAAGAAGGTCG CTGCCCCTGGTCCTGCGCGCAAGCCGGCTGTAACGGTGGAGAGCTTTGAC AGCGTGATGGCGGACTCGGACGGCCAGATGCGAGGCCAGCTGCATCTGGT GGAGCGTTGCCCAACCTTCGTGTACAGCTCCTGGCGCGATATGGACCATG ACGTTTACTTGTTCAATTTCCCTATGCTGGGAGCGGCCAAGCGTGAGGCG CACCCTAATGGCGTCATTGCCTTCTTTCCCGGCTTCGGTCTCTACAAGGA ATATACGGATAAGGCCTTCCGTAGCGTGGCCATGCTTGGCGACCAGCCCA CGAAGCTGCGCTCACGGGAGGAGATCTTCGCTTTCCTGGAGAAGGGCACA CAGATGCGCTCCACGGCCAAGGGCGGCAGCGGGGAGGGGGCGCGTCGCAA GGCCTACGTGGCAGCCTGGCAGTTCTTTCAGCAATATATCTTCAAGGAGG CTGTCTGCACCGAGGACCCTTTCCCCCCTCTCGCCCGCCGCGTCCCCAGC AAGAGCAAGAAGCGCAGCTCCACCTCCTCAACCCCCAAGAAGCCCCGCGC CCATGCCGCCTCTTTGCTCGTAGCCTTGCCACCACTCCCACCAGCGGCAC CTCTGACCGTACCTGTCCCCTTGCCGTCCACCGCGTCGACGTTGGAGGAG AAAAATGGTGCTGGTGTAGTTGCGTTGGCTTCCCCGGGACCACCGCCCCT AGCAACCACCACCCTGCCCACACCGCCGCAGCTAGCAGCAGGCTCAGTGG CGGTAGCAGGGGCGACAGGAGGAAAGAAAGATCTAGGACAAATGTCGGGG TCGGACGGCGCACCTTCGCCATCAGTGGAGGAGGTGCCTGACGAGATGGT GGAGGGACTGGAAGAGGGGGCCGCGTGGGCCACGCTGCCCGACCCTGACG ACCGGTCGATCCGGGGCTTGTTTTCTTCATTGCGCTGGCGGCTAGAGCAG CTGGAGGACGTTTGGGAGGGTGGGGACCAATTTGTGTGGACCCTCAAGAG TTCGCAGAGCAACATTGACAATTTGTGTGATGACCTTTTCGGGGACCCGG GAGATCCCGAAGCGGACGACTGGAAGCGGATGGTGGGCAGTAGCTTGGAC AAGACGCGGAAGAAACTCGAGGAGAAGCTGCGGGCTATGGGGACTCAGGG GGTTGCGACGAGTAGGCCGGCCTATGTGCATGGAAGGGCCTTGTTGGACA TTTACTCAGATTTGAAGGATGCGGTAGGGGGTTTCGAGGAAGGGATGGAG GGAGAGGTGGAAGGATGGGACTCCATGGACTTCCCACGGCGTGCCTCTGC CGCCTCGATTCCTGCCGTTGTGGCTACTGATGCTGATGCCGATGTGGAGG AGGAGAAAATGAAGGAAAACGTCGGAATACCTTTGGCCGGTGAGGGGAAG TTAGAGGCCGTGGAGAAAGGAATGACGGAGGAAGGGATTTTCGAGGCGGC GGAGATAGAAGTGGAGATGGAAAGGGAAGAGGGGCAGATGAGGGAGGGGA CAGAGGAGGAGGAAAGCGAGATAACGCCCCTCCCAGTTACTGAAGAGGAC GGGGACGACCAGGAGAAGGACGGTTCCGTGGCGGCGGAGCTCCCGGGAGG CTCCATGGATGAGGAGGGGGCAGGCACCTCCTCCTCTTCCAACGATGTGG CCACCATCTCTGCCACTCCTAAGCCCGCGCACGCTGATAAAGGCCATAAT GAGGAGGAAGAGGAGGAGAGGGGGGAGGGGGGGAAGGATTTAGTGCCTGT GCCCTAA back to top
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