NO08G02160.2, NO08G02160.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02160.2
Unique NameNO08G02160.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2187
Alignment locationchr8:636080..638622 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:636080..638622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02160.2 vs.
Match: EWM26728.1 (arginine-trna-protein transferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 315.8 bits (808), Expect = 1.400e-82
Identity = 177/295 (60.00%), Postives = 219/295 (74.24%), Query Frame = 0 
Query:   11 AFACAKLVTVIVMSTLAQAATLLPQCCFVISNGASQALTPATSPASMAMTAPLAYTRVRGRSRGLLRCFLGLSRNGNSGGKPQS---PPVEE------QDVNGVGSTSTTMRRREFVVTPHHHGNSHLEGLLNLAGREKEEFAGALVKLEHHMQLEVAEALIFNIRKYTNGGMLPSADGSLPKLRPDQQEVVTEFIPEVMRIMDRLEQQGHHHRDARVALYATEALSYEVSTKNVVKAAPQLARIFKNIDMMVAKHPELKGGAPFIIQGMMFLNAPIPVRSVKKAKECFQSAHRV 297
            +F    L  ++ +  L Q   L    CFV S G + A + +T  ASM+        R+R   RG +RCFLG   + N+ G+ Q    P V++      QD  G  S +T M +R FV+TPH HGN HLE LL+LAGREK +F+ AL +LEHH+QLEVAEALIFNIRK+TNGGMLPSADGS PKL  +Q++VV E+IPEV++IMDRLE+ GHHHRDARV+LYATEALSYEVST ++VKAAP LARIFKNID+M+AK PELKGGAPFII+GMMFLNAP+PVRSV+KAKECFQ+AH++
Sbjct:   14 SFGMVFLHVIMTLCCLVQVHGLHRLGCFVTS-GKTGAPSASTWLASMSGDR----LRMRFYRRGQMRCFLGTEESQNNDGRAQPLARPDVDDNAGGLRQDAGGPSSLAT-MGQRAFVITPHQHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLARIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQI 302
The following BLAST results are available for this feature:
BLAST of NO08G02160.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26728.11.400e-8260.00arginine-trna-protein transferase 1 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02160NO08G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02160.2NO08G02160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02160.2.cds1NO08G02160.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02160.2.cds2NO08G02160.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02160.2.cds3NO08G02160.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02160.2 ID=NO08G02160.2|Name=NO08G02160.2|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp
CTCTCGCCTCAAAGTGCCTCTGCTTTTTTGGAGAGCAAGAATGTGATTAT
GGAGGGTTGTAAAGGAGGGAGCAAGTTGGAAAAGTGCATTAAAGTGACTC
ACGGCTGCAGCACATGGTGTTTTCCGATCATCAAACAGCTTAACAATATG
CTTGGTAAGCAGAAGCCGCGAGCACAAGCTGACGGCGCATGTGTGGTACA
GGAACGGCCAAATGATCTCGAAAGAGACGAGGAAGGAGGACCGAGGAAGA
AGAAGACTTCAAAGTTTTCGGAGATGACGACTTTCAAAGCCTTTGACAAC
ACTCAAAATACTGCGGCCATATTGATTTATCTTCATTCTTCAGCTGATCT
ACGTCCACACTTATGCCTCTCGTTGTCCTACCTTACAGATCTCGTCGGAG
CTGAAGCTTGCAAGTGAGATCAAGCACCCAAAGCGACGCCTTTCAAAAAC
GCACATTCCCATAACATCTCCCGCACGTCTTGTCAGCAAATAATGACTTG
TAGAAGAATAGGACATTCACCAGCATTCGCTTGCGCAAAGCTGGTGACTG
TTATTGTGATGTCCACCTTGGCCCAAGCGGCTACACTGCTTCCCCAGTGC
TGTTTTGTCATAAGCAACGGGGCATCACAGGCGCTAACGCCAGCAACGTC
TCCAGCCTCCATGGCCATGACGGCACCATTGGCATACACGCGCGTACGGG
GTAGGTCTCGGGGGCTCTTGAGATGCTTTTTAGGCCTAAGCAGGAATGGG
AACAGCGGTGGGAAGCCTCAGTCGCCGCCGGTGGAGGAGCAGGACGTGAA
CGGTGTTGGGTCTACAAGCACTACCATGCGCCGACGGGAGTTTGTGGTGA
CGCCGCACCACCACGGTAACAGCCATTTGGAGGGCTTGTTAAATCTGGCA
GGGCGGGAGAAGGAGGAGTTTGCGGGCGCACTGGTGAAGTTAGAGCATCA
CATGCAGCTGGAGGTAGCCGAGGCGCTCATCTTCAACATTCGTAAATACA
CCAACGGTGGGATGCTCCCGTCTGCGGACGGCTCGCTACCCAAGCTCAGG
CCAGATCAGCAGGAGGTAGTGACAGAATTTATTCCTGAGGTGATGCGGAT
CATGGATAGGTTGGAGCAGCAAGGCCACCACCACCGGGACGCCCGCGTGG
CACTCTATGCGACCGAGGCGCTAAGTTATGAGGTGTCGACTAAGAATGTC
GTCAAAGCTGCACCTCAACTAGCCCGCATCTTCAAGAACATCGACATGAT
GGTGGCCAAACACCCTGAGCTAAAGGGCGGCGCCCCCTTCATCATCCAAG
GCATGATGTTTCTCAATGCCCCTATACCCGTCCGCAGCGTCAAGAAGGCC
AAAGAGTGTTTCCAGTCCGCGCATAGGGTGCGTTCAAGGAAGGAAATATC
ATGACATTTTGACTTGGTTGATGAAAATCCATGCTGCAGTCTGACTTGGT
TGATTCTAGATTTTTTATTTTTTAACCCCTTCCTCCTTTTCTCCCTCATT
CCCTCCCTCCCTCCTCTCACACAAACAGATCGACGCCACCAGCCCGCGCA
ACAACTACTTTTGCGGTGTGACGGCCTATTTAGAAAAAGATTACACAGAA
GCTCACACTTACTTTGCGGAATCCCTGCGTCTAGCCCAGGAGGCGGCCGC
GATTGCTAGCGCTGTACGGAAAGGCGTCGCTCTTTCCGGTGATGGGGGAG
GAGAACGAGGAGGAGGATGTGCAGAAGCAGAAAATCCGGCAAATAAAGAG
ATGCCAATGGACGAGTACTTGCATGTGCAATGCCGGTTGGGCATGGACCT
GGCTAGCAGTCGGATCAAGTAGAAGAAGATGTGATGATGGCGGGGTTTAT
TTCTTTGTAAATATTATAGCGCGGGATGCGAAACCAGAGAGGGTGAATGA
AGAAGTGAGTGAGCGTAAATAAGTGAATGACATGACTAGGATAGTCACCG
GGTGCTGGTGTCTGTATTGTAGGCCCCCCCCCCTCCTCCCTTGCTTGTCC
TGTTGCAAATTTGATGTCTCGGGAGACAAGAGCAAACAAATAAAGATAGG
AGGGACGGAATGAGGAAGGGGGATTGCTTCGACGCCTTATTTGAGTCACC
TTTGGCTGTTGTAAAAAGGAGAGCACATGGAGTGTAAAAGAAGATCAACA
CTCAATAAAGAAAGCTTCCAAGAAATTAAAACGACGC
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protein sequence of NO08G02160.2

>NO08G02160.2-protein ID=NO08G02160.2-protein|Name=NO08G02160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MTCRRIGHSPAFACAKLVTVIVMSTLAQAATLLPQCCFVISNGASQALTP
ATSPASMAMTAPLAYTRVRGRSRGLLRCFLGLSRNGNSGGKPQSPPVEEQ
DVNGVGSTSTTMRRREFVVTPHHHGNSHLEGLLNLAGREKEEFAGALVKL
EHHMQLEVAEALIFNIRKYTNGGMLPSADGSLPKLRPDQQEVVTEFIPEV
MRIMDRLEQQGHHHRDARVALYATEALSYEVSTKNVVKAAPQLARIFKNI
DMMVAKHPELKGGAPFIIQGMMFLNAPIPVRSVKKAKECFQSAHRVRSRK
EIS*
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mRNA from alignment at chr8:636080..638622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02160.2 ID=NO08G02160.2|Name=NO08G02160.2|organism=Nannochloropsis oceanica|type=mRNA|length=2543bp|location=Sequence derived from alignment at chr8:636080..638622+ (Nannochloropsis oceanica)
CTCTCGCCTCAAAGTGCCTCTGCTTTTTTGGAGAGCAAGAATGTGATTAT
GGAGGGTTGTAAAGGAGGGAGCAAGTTGGAAAAGTGCATTAAAGTGACTC
ACGGCTGCAGCACATGGTGTTTTCCGATCATCAAACAGCTTAACAATATG
CTTGGTAAGCAGAAGCCGCGAGCACAAGCTGACGGCGCATGTGTGGTACA
GGAACGGCCAAATGATCTCGAAAGAGACGAGGAAGGAGGACCGAGGAAGA
AGAAGACTTCAAAGTTTTCGGAGATGACGACTTTCAAAGCCTTTGACAAC
ACTCAAAATACTGCGGCCATATTGATTTATCTTCATTCTTCAGCTGATCT
ACGTCCACACTTATGCCTCTCGTTGTCCTACCTTACAGATCTCGTCGGAG
CTGAAGCTTGCAAGTGAGATCAAGCACCCAAAGCGACGCCTTTCAAAAAC
GCACATTCCCATAACATCTCCCGCACGTCTTGTCAGCAAATAATGACTTG
TAGAAGAATAGGACATTCACCAGCATTCGCTTGCGCAAAGCTGGTGACTG
TTATTGTGATGTCCACCTTGGCCCAAGCGGCTACACTGCTTCCCCAGTGC
TGTTTTGTCATAAGCAACGGGGCATCACAGGCGCTAACGCCAGCAACGTC
TCCAGCCTCCATGGCCATGACGGCACCATTGGCATACACGCGCGTACGGG
GTAGGTCTCGGGGGCTCTTGAGATGCTTTTTAGGCCTAAGCAGGAATGGG
AACAGCGGTGGGAAGCCTCAGTCGCCGCCGGTGGAGGAGCAGGACGTGAA
CGGTGTTGGGTCTACAAGCACTACCATGCGCCGACGGGAGTTTGTGGTGA
CGCCGCACCACCACGGTAACAGCCATTTGGAGGGCTTGTTAAATCTGGCA
GGGCGGGAGAAGGAGGAGTTTGCGGGCGCACTGGTGAAGTTAGAGCATCA
CATGCAGCTGGAGGTAGCCGAGGCGCTCATCTTCAACATTCGGTGCGTAC
CTTTTTGGGAGGGCAGGAAGTTCGGGGAGTGTTCTAGTAGAGGGAGATAT
GTTCATGGTTGGCAGCGACAAGCTCCACCTTATTTATTGGCCTTTATATC
CTCCTATCATCAATGAGGTCCGTCTTCTGTTTCTTAGTCCTTTCTCTCCC
TCCCCTCCCACCCACTCACAGTAAATACACCAACGGTGGGATGCTCCCGT
CTGCGGACGGCTCGCTACCCAAGCTCAGGCCAGATCAGCAGGAGGTAGTG
ACAGAATTTATTCCTGAGGTGATGCGGATCATGGATAGGTTGGAGCAGCA
AGGCCACCACCACCGGGACGCCCGCGTGGCACTCTATGCGACCGAGGCGC
TAAGTTATGAGGTGTCGACTAAGAATGTCGTCAAAGCTGCACGTACGTCA
GGGGATGACCTGAGACTTTGAATAAAGAGCATCGCCTGACCGAGAGCAGC
CAGTTTTACCCAGTTGTCTGCCCTATGTATCCTTTGTGTCGTCGGCACTT
CCTCATCGTCCCCTTTTTCAGTTTCTCTTGCTCACGCTTTTTTTTAAATC
CCCCCTAACCTCCTGAAAGCTCAACTAGCCCGCATCTTCAAGAACATCGA
CATGATGGTGGCCAAACACCCTGAGCTAAAGGGCGGCGCCCCCTTCATCA
TCCAAGGCATGATGTTTCTCAATGCCCCTATACCCGTCCGCAGCGTCAAG
AAGGCCAAAGAGTGTTTCCAGTCCGCGCATAGGGTGCGTTCAAGGAAGGA
AATATCATGACATTTTGACTTGGTTGATGAAAATCCATGCTGCAGTCTGA
CTTGGTTGATTCTAGATTTTTTATTTTTTAACCCCTTCCTCCTTTTCTCC
CTCATTCCCTCCCTCCCTCCTCTCACACAAACAGATCGACGCCACCAGCC
CGCGCAACAACTACTTTTGCGGTGTGACGGCCTATTTAGAAAAAGATTAC
ACAGAAGCTCACACTTACTTTGCGGAATCCCTGCGTCTAGCCCAGGAGGC
GGCCGCGATTGCTAGCGCTGTACGGAAAGGCGTCGCTCTTTCCGGTGATG
GGGGAGGAGAACGAGGAGGAGGATGTGCAGAAGCAGAAAATCCGGCAAAT
AAAGAGATGCCAATGGACGAGTACTTGCATGTGCAATGCCGGTTGGGCAT
GGACCTGGCTAGCAGTCGGATCAAGTAGAAGAAGATGTGATGATGGCGGG
GTTTATTTCTTTGTAAATATTATAGCGCGGGATGCGAAACCAGAGAGGGT
GAATGAAGAAGTGAGTGAGCGTAAATAAGTGAATGACATGACTAGGATAG
TCACCGGGTGCTGGTGTCTGTATTGTAGGCCCCCCCCCCTCCTCCCTTGC
TTGTCCTGTTGCAAATTTGATGTCTCGGGAGACAAGAGCAAACAAATAAA
GATAGGAGGGACGGAATGAGGAAGGGGGATTGCTTCGACGCCTTATTTGA
GTCACCTTTGGCTGTTGTAAAAAGGAGAGCACATGGAGTGTAAAAGAAGA
TCAACACTCAATAAAGAAAGCTTCCAAGAAATTAAAACGACGC
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Coding sequence (CDS) from alignment at chr8:636080..638622+

>NO08G02160.2 ID=NO08G02160.2|Name=NO08G02160.2|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr8:636080..638622+ (Nannochloropsis oceanica)
ATGACTTGTAGAAGAATAGGACATTCACCAGCATTCGCTTGCGCAAAGCT
GGTGACTGTTATTGTGATGTCCACCTTGGCCCAAGCGGCTACACTGCTTC
CCCAGTGCTGTTTTGTCATAAGCAACGGGGCATCACAGGCGCTAACGCCA
GCAACGTCTCCAGCCTCCATGGCCATGACGGCACCATTGGCATACACGCG
CGTACGGGGTAGGTCTCGGGGGCTCTTGAGATGCTTTTTAGGCCTAAGCA
GGAATGGGAACAGCGGTGGGAAGCCTCAGTCGCCGCCGGTGGAGGAGCAG
GACGTGAACGGTGTTGGGTCTACAAGCACTACCATGCGCCGACGGGAGTT
TGTGGTGACGCCGCACCACCACGGTAACAGCCATTTGGAGGGCTTGTTAA
ATCTGGCAGGGCGGGAGAAGGAGGAGTTTGCGGGCGCACTGGTGAAGTTA
GAGCATCACATGCAGCTGGAGGTAGCCGAGGCGCTCATCTTCAACATTCG
TAAATACACCAACGGTGGGATGCTCCCGTCTGCGGACGGCTCGCTACCCA
AGCTCAGGCCAGATCAGCAGGAGGTAGTGACAGAATTTATTCCTGAGGTG
ATGCGGATCATGGATAGGTTGGAGCAGCAAGGCCACCACCACCGGGACGC
CCGCGTGGCACTCTATGCGACCGAGGCGCTAAGTTATGAGGTGTCGACTA
AGAATGTCGTCAAAGCTGCACCTCAACTAGCCCGCATCTTCAAGAACATC
GACATGATGGTGGCCAAACACCCTGAGCTAAAGGGCGGCGCCCCCTTCAT
CATCCAAGGCATGATGTTTCTCAATGCCCCTATACCCGTCCGCAGCGTCA
AGAAGGCCAAAGAGTGTTTCCAGTCCGCGCATAGGGTGCGTTCAAGGAAG
GAAATATCATGA
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Synonyms
Publications