NO08G02100.1, NO08G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02100.1
Unique NameNO08G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1702
Alignment locationchr8:622292..624104 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:622292..624104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02100.1 vs.
Match: EWM26652.1 (ribosome biogenesis gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 658.3 bits (1697), Expect = 1.900e-185
Identity = 355/497 (71.43%), Postives = 398/497 (80.08%), Query Frame = 0 
Query:    6 SQLDHPRRARRRPRAPSCSTLVLSAIMLLHRSAVAFLTQTPFTSSKILRLRSVLPGNTASLTTLGAGGRKRGEILKPEYGLRPDEEGVSISRHNINWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPPEIDEGEAALAAAEMAGREAKEEERRRRQRRRELMEMTKEEGEREVGLSLGGGEEVGELGLGGGAVQELDPVGEAYEEAFEDRKQGPGEGESPKVGVGQFEGW 503
            +Q  H RR +   R P  S   ++ +ML +R + AF+ + P  ++K+    + L   TA+ T LGAGGRK GE+ +P +G RPDEE VS+SRH INWYPGHIAKAERELQDFLKLVDVV+EARDARIPT+TTHPLVRQW+GRRPLIVAMTRKDMAP+ A+KEW DFYV+SARAA R+GQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGR+LAKSKNMPGVTKRISWVRLGAAAMG SRKE+ELELLDSPGIIPAKQVDQ TAFKLAVCNDIGQASYDVQVVAGELINML RVH  RPGYVDL RL+QRYQLDP  L+GEE+LHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLE+PPE+ + E    A  MAG E +EE+RR ++RRREL+E                 +E+  +            + E      E R+Q PGEGESPKVGVGQFEGW
Sbjct:    8 NQQYHLRRFKGFTR-PIYSAAYITIMMLFYRFSGAFINKVPICTTKLKNRPAALC--TAAFTALGAGGRKSGEVQEPYFGFRPDEEDVSVSRHVINWYPGHIAKAERELQDFLKLVDVVVEARDARIPTATTHPLVRQWVGRRPLIVAMTRKDMAPSAAIKEWSDFYVQSARAAHRIGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRRLAKSKNMPGVTKRISWVRLGAAAMGSSRKEEELELLDSPGIIPAKQVDQATAFKLAVCNDIGQASYDVQVVAGELINMLRRVHARRPGYVDLRRLEQRYQLDPCTLSGEEYLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEIPPEMVDLEENKWA--MAGEEIREEKRREKERRRELIERMDR-------------KEILPIEAAPRERDTESNIEEKQGSERESRQQRPGEGESPKVGVGQFEGW 486
The following BLAST results are available for this feature:
BLAST of NO08G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26652.11.900e-18571.43ribosome biogenesis gtp-binding protein [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02100NO08G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02100.1NO08G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02100.1.cds1NO08G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02100.1.cds2NO08G02100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02100.1 ID=NO08G02100.1|Name=NO08G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp
CAGCGTTGGCCAACGGGGGAGGACCGAACTCAAGCCTCTTTTTGTTTTGG
TCGACCTCCTTTTCCCAAGCGACTGATCTTGGAGAAGCGAGCAAGCCATG
CTCACCAGCACCAGCCAGCTTGACCACCCACGCCGTGCACGCCGTCGTCC
CCGTGCTCCTTCGTGTAGTACTTTGGTGCTGAGCGCAATTATGCTTCTCC
ATAGATCGGCCGTGGCCTTTTTGACACAGACCCCTTTCACGAGCAGCAAG
ATCTTAAGGCTACGATCTGTGCTGCCGGGCAATACGGCATCCTTAACAAC
CCTTGGCGCTGGCGGGCGAAAGCGCGGCGAGATCCTCAAGCCCGAGTACG
GCCTGAGGCCCGACGAGGAAGGCGTCTCCATCTCCCGGCACAACATCAAC
TGGTACCCCGGCCACATCGCCAAGGCTGAGAGGGAGCTGCAGGATTTTTT
GAAGCTCGTAGATGTGGTGATCGAGGCACGGGATGCCCGCATCCCTACCT
CTACTACTCATCCTTTGGTTCGGCAATGGATTGGCCGACGGCCATTAATC
GTAGCTATGACCCGCAAAGACATGGCCCCCGCTGGCGCCATGAAAGAATG
GGGCGACTTTTACGTCAAATCTGCCCGGGCCGCCTCTCGAATGGGCCAAC
CGCGCGTCCCTGTGGTGTTTGTCGACTCAAGGCAAGGCACAGACATACAC
CGTCTCAAAATGATTGCGCTGAAGGCAGGCGCCGCGGTCAATGAGCGGCG
GGCCCGCCTTGGCCTCCTGCCACGCAGCATCCGAGTAGCTGTAATCGGAT
ACCCGAACGTCGGTAAATCTGCGATCATTAATAAGCTGATCGGAAGGAAG
CTGGCCAAGAGTAAGAATATGCCCGGTGTGACCAAGCGCATTTCCTGGGT
TCGTTTGGGAGCGGCTGCGATGGGCGGTTCCCGGAAAGAAGACGAGTTGG
AATTGCTAGACTCCCCTGGAATTATTCCCGCGAAGCAAGTGGACCAAAAC
ACTGCTTTCAAGCTAGCGGTATGCAATGATATTGGACAAGCGTCTTACGA
CGTCCAAGTAGTCGCGGGCGAGCTGATAAACATGCTCTGTCGCGTCCACG
AAAGCCGCCCAGGCTACGTAGACCTCTCCAGACTCCAGCAACGGTACCAA
CTTGACCCTTGGATTTTAACAGGAGAGGAGTTTTTGCATGCATTGGCTGC
AAAGCTGTACAGGGGGAATCTGTATTCCGCTGCAGATCGACTGATGTCTG
ATTTTAGGAAAGGGCATTTTGGACCTGTCACCCTTGAGGTTCCTCCTGAG
ATAGACGAAGGGGAGGCGGCCTTGGCAGCGGCAGAGATGGCGGGGAGGGA
AGCGAAAGAGGAGGAGCGGAGGAGACGACAGCGGAGAAGGGAGCTGATGG
AAATGACGAAGGAGGAGGGGGAAAGGGAGGTGGGGTTGTCTTTGGGAGGA
GGGGAGGAGGTTGGGGAGTTAGGCTTGGGAGGAGGAGCAGTGCAGGAATT
GGACCCAGTGGGAGAGGCATATGAGGAAGCATTTGAGGACAGGAAGCAAG
GCCCTGGTGAAGGGGAGAGTCCCAAGGTGGGAGTAGGACAGTTTGAAGGG
TGGTGAAGAGAAAGAGATAGGCGCAAAATGTCGCGCTTAAGTAATTAAAT
AATAATATGTGCAAGAAATTAAATAGAGCACATTACACCTAAAGCAAATG
AA
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protein sequence of NO08G02100.1

>NO08G02100.1-protein ID=NO08G02100.1-protein|Name=NO08G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MLTSTSQLDHPRRARRRPRAPSCSTLVLSAIMLLHRSAVAFLTQTPFTSS
KILRLRSVLPGNTASLTTLGAGGRKRGEILKPEYGLRPDEEGVSISRHNI
NWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPL
IVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDI
HRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGR
KLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQ
NTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRY
QLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPP
EIDEGEAALAAAEMAGREAKEEERRRRQRRRELMEMTKEEGEREVGLSLG
GGEEVGELGLGGGAVQELDPVGEAYEEAFEDRKQGPGEGESPKVGVGQFE
GW*
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mRNA from alignment at chr8:622292..624104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02100.1 ID=NO08G02100.1|Name=NO08G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp|location=Sequence derived from alignment at chr8:622292..624104+ (Nannochloropsis oceanica)
CAGCGTTGGCCAACGGGGGAGGACCGAACTCAAGCCTCTTTTTGTTTTGG
TCGACCTCCTTTTCCCAAGCGACTGATCTTGGAGAAGCGAGCAAGCCATG
CTCACCAGCACCAGCCAGCTTGACCACCCACGCCGTGCACGCCGTCGTCC
CCGTGCTCCTTCGTGTAGTACTTTGGTGCTGAGCGCAATTATGCTTCTCC
ATAGATCGGCCGTGGCCTTTTTGACACAGGTAGGTAGGCTGTCTTGCTGT
TTTACTGCTCGTTGCCCTCCTATCCCTCCCTCCTTCCGACGCGCCGGAGA
AGTTTGACTAAATTGCCCCTGCCCCTGCCTTAAAACACAGACCCCTTTCA
CGAGCAGCAAGATCTTAAGGCTACGATCTGTGCTGCCGGGCAATACGGCA
TCCTTAACAACCCTTGGCGCTGGCGGGCGAAAGCGCGGCGAGATCCTCAA
GCCCGAGTACGGCCTGAGGCCCGACGAGGAAGGCGTCTCCATCTCCCGGC
ACAACATCAACTGGTACCCCGGCCACATCGCCAAGGCTGAGAGGGAGCTG
CAGGATTTTTTGAAGCTCGTAGATGTGGTGATCGAGGCACGGGATGCCCG
CATCCCTACCTCTACTACTCATCCTTTGGTTCGGCAATGGATTGGCCGAC
GGCCATTAATCGTAGCTATGACCCGCAAAGACATGGCCCCCGCTGGCGCC
ATGAAAGAATGGGGCGACTTTTACGTCAAATCTGCCCGGGCCGCCTCTCG
AATGGGCCAACCGCGCGTCCCTGTGGTGTTTGTCGACTCAAGGCAAGGCA
CAGACATACACCGTCTCAAAATGATTGCGCTGAAGGCAGGCGCCGCGGTC
AATGAGCGGCGGGCCCGCCTTGGCCTCCTGCCACGCAGCATCCGAGTAGC
TGTAATCGGATACCCGAACGTCGGTAAATCTGCGATCATTAATAAGCTGA
TCGGAAGGAAGCTGGCCAAGAGTAAGAATATGCCCGGTGTGACCAAGCGC
ATTTCCTGGGTTCGTTTGGGAGCGGCTGCGATGGGCGGTTCCCGGAAAGA
AGACGAGTTGGAATTGCTAGACTCCCCTGGAATTATTCCCGCGAAGCAAG
TGGACCAAAACACTGCTTTCAAGCTAGCGGTATGCAATGATATTGGACAA
GCGTCTTACGACGTCCAAGTAGTCGCGGGCGAGCTGATAAACATGCTCTG
TCGCGTCCACGAAAGCCGCCCAGGCTACGTAGACCTCTCCAGACTCCAGC
AACGGTACCAACTTGACCCTTGGATTTTAACAGGAGAGGAGTTTTTGCAT
GCATTGGCTGCAAAGCTGTACAGGGGGAATCTGTATTCCGCTGCAGATCG
ACTGATGTCTGATTTTAGGAAAGGGCATTTTGGACCTGTCACCCTTGAGG
TTCCTCCTGAGATAGACGAAGGGGAGGCGGCCTTGGCAGCGGCAGAGATG
GCGGGGAGGGAAGCGAAAGAGGAGGAGCGGAGGAGACGACAGCGGAGAAG
GGAGCTGATGGAAATGACGAAGGAGGAGGGGGAAAGGGAGGTGGGGTTGT
CTTTGGGAGGAGGGGAGGAGGTTGGGGAGTTAGGCTTGGGAGGAGGAGCA
GTGCAGGAATTGGACCCAGTGGGAGAGGCATATGAGGAAGCATTTGAGGA
CAGGAAGCAAGGCCCTGGTGAAGGGGAGAGTCCCAAGGTGGGAGTAGGAC
AGTTTGAAGGGTGGTGAAGAGAAAGAGATAGGCGCAAAATGTCGCGCTTA
AGTAATTAAATAATAATATGTGCAAGAAATTAAATAGAGCACATTACACC
TAAAGCAAATGAA
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Coding sequence (CDS) from alignment at chr8:622292..624104+

>NO08G02100.1 ID=NO08G02100.1|Name=NO08G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at chr8:622292..624104+ (Nannochloropsis oceanica)
ATGCTCACCAGCACCAGCCAGCTTGACCACCCACGCCGTGCACGCCGTCG
TCCCCGTGCTCCTTCGTGTAGTACTTTGGTGCTGAGCGCAATTATGCTTC
TCCATAGATCGGCCGTGGCCTTTTTGACACAGACCCCTTTCACGAGCAGC
AAGATCTTAAGGCTACGATCTGTGCTGCCGGGCAATACGGCATCCTTAAC
AACCCTTGGCGCTGGCGGGCGAAAGCGCGGCGAGATCCTCAAGCCCGAGT
ACGGCCTGAGGCCCGACGAGGAAGGCGTCTCCATCTCCCGGCACAACATC
AACTGGTACCCCGGCCACATCGCCAAGGCTGAGAGGGAGCTGCAGGATTT
TTTGAAGCTCGTAGATGTGGTGATCGAGGCACGGGATGCCCGCATCCCTA
CCTCTACTACTCATCCTTTGGTTCGGCAATGGATTGGCCGACGGCCATTA
ATCGTAGCTATGACCCGCAAAGACATGGCCCCCGCTGGCGCCATGAAAGA
ATGGGGCGACTTTTACGTCAAATCTGCCCGGGCCGCCTCTCGAATGGGCC
AACCGCGCGTCCCTGTGGTGTTTGTCGACTCAAGGCAAGGCACAGACATA
CACCGTCTCAAAATGATTGCGCTGAAGGCAGGCGCCGCGGTCAATGAGCG
GCGGGCCCGCCTTGGCCTCCTGCCACGCAGCATCCGAGTAGCTGTAATCG
GATACCCGAACGTCGGTAAATCTGCGATCATTAATAAGCTGATCGGAAGG
AAGCTGGCCAAGAGTAAGAATATGCCCGGTGTGACCAAGCGCATTTCCTG
GGTTCGTTTGGGAGCGGCTGCGATGGGCGGTTCCCGGAAAGAAGACGAGT
TGGAATTGCTAGACTCCCCTGGAATTATTCCCGCGAAGCAAGTGGACCAA
AACACTGCTTTCAAGCTAGCGGTATGCAATGATATTGGACAAGCGTCTTA
CGACGTCCAAGTAGTCGCGGGCGAGCTGATAAACATGCTCTGTCGCGTCC
ACGAAAGCCGCCCAGGCTACGTAGACCTCTCCAGACTCCAGCAACGGTAC
CAACTTGACCCTTGGATTTTAACAGGAGAGGAGTTTTTGCATGCATTGGC
TGCAAAGCTGTACAGGGGGAATCTGTATTCCGCTGCAGATCGACTGATGT
CTGATTTTAGGAAAGGGCATTTTGGACCTGTCACCCTTGAGGTTCCTCCT
GAGATAGACGAAGGGGAGGCGGCCTTGGCAGCGGCAGAGATGGCGGGGAG
GGAAGCGAAAGAGGAGGAGCGGAGGAGACGACAGCGGAGAAGGGAGCTGA
TGGAAATGACGAAGGAGGAGGGGGAAAGGGAGGTGGGGTTGTCTTTGGGA
GGAGGGGAGGAGGTTGGGGAGTTAGGCTTGGGAGGAGGAGCAGTGCAGGA
ATTGGACCCAGTGGGAGAGGCATATGAGGAAGCATTTGAGGACAGGAAGC
AAGGCCCTGGTGAAGGGGAGAGTCCCAAGGTGGGAGTAGGACAGTTTGAA
GGGTGGTGA
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Synonyms
Publications