NO08G02090.2, NO08G02090.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02090.2
Unique NameNO08G02090.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1548
Alignment locationchr8:619927..621954 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:619927..621954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02090.2 vs.
Match: EWM27444.1 (Glycosyl transferase, family 8, partial [Nannochloropsis gaditana])

HSP 1 Score: 374.8 bits (961), Expect = 3.100e-100
Identity = 169/243 (69.55%), Postives = 199/243 (81.89%), Query Frame = 0 
Query:  124 SKYGIDLIAMVHPNVTTSRAALMRAGWKVLERDIPLDINEIQGDYLRERIAKNGCCGATELLKLYAWRLTDYHRVVHLDMDSLLLQPLDELFDLSGKDFLYTCDYGMMTRGSKACPVQGGFLILKPNEEDFKRLVNTVKLGDFRAGSAWGGEHIGWYWGGMTIQGLLPYYFHKLTDPTRAKEVDRCVYNNMFDNPECKNASI-PMIKNVHFTVCQKPWTCTTHAKNAACTPFMEKWFQLRREV 366
            SKYG+D IA+VHPNVTTSRAAL R+GWKV+ERDIP+DI +IQG +LRE IAK+GCCGATELLKLYAW LTDYHRVVHLDMDS+LLQP+DELFD   K F+YTCDYGM     KAC VQGGFL+L+PN  +F+RLV+TVK+GDFR GS WGG+ IGW +GGMTIQGLLPYYF  L+DP  + ++D C YN MFD P+CKNAS+ P +K+VHFTVCQKPW+C    K  AC  F  KWF+LR E+
Sbjct:    3 SKYGVDFIAIVHPNVTTSRAALRRSGWKVIERDIPVDITDIQGTFLREHIAKSGCCGATELLKLYAWTLTDYHRVVHLDMDSMLLQPMDELFDKEDKTFMYTCDYGMTNERLKACMVQGGFLLLRPNVTEFERLVDTVKIGDFRQGSGWGGKGIGWGYGGMTIQGLLPYYFLSLSDPELSLQLDHCKYNTMFDQPQCKNASLFPSVKSVHFTVCQKPWSCINTHKE-ACEYFKSKWFELRDEL 244
The following BLAST results are available for this feature:
BLAST of NO08G02090.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27444.13.100e-10069.55Glycosyl transferase, family 8, partial [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02090NO08G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02090.2NO08G02090.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02090.2.cds1NO08G02090.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02090.2.cds2NO08G02090.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02090.2.cds3NO08G02090.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02090.2 ID=NO08G02090.2|Name=NO08G02090.2|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp
ACAGGCAGTACAAATATGCCCAAACATCGAGGCGTCAGCGTCTGTGCTGG
GCGTGGTGAGGTGGTGAGTGGACGTTTCCCGCACGGTGTGCTGGAGCGGA
GCAAGTTCCAAAGACGGGTGCCCACGGTACTGAAGGTCACGATCATCCTC
GGCGCCTTCGTATTTTTTGCCTTGAAGCTCACCTACAGTCGATCAACTCA
GGACGCGATCACAACCTTGGACCTCTCCTCCGTGTCTTCAGGTGGACAGA
AGAAACTGAAAGCGCAGGCAGGCCGGAGGATGGATGGCAAGACGGTCGCC
TATGTCATCTCCGTAACAGCGGACGGGCCCTACATGGACGGGGCTGCTGT
ATTGGCGCACAGTATCCGCAAGGCCTCGACAGACTCTAAGTACGGGATCG
ACCTTATTGCCATGGTCCATCCTAACGTCACCACCTCCCGTGCAGCCCTC
ATGCGCGCCGGCTGGAAAGTGCTCGAACGAGATATTCCCCTCGACATCAA
TGAAATCCAGGGCGACTACCTGAGAGAGCGTATCGCCAAGAACGGCTGCT
GCGGTGCGACCGAGCTACTGAAGCTCTACGCATGGCGCCTCACTGACTAC
CACCGCGTCGTGCACCTGGACATGGACTCCCTCCTCCTCCAACCCCTCGA
CGAACTATTTGACTTGTCAGGAAAAGATTTCTTGTACACATGTGACTATG
GAATGATGACTAGGGGCTCGAAAGCCTGCCCGGTGCAAGGGGGGTTTCTC
ATCTTGAAGCCCAATGAGGAGGATTTCAAGAGACTGGTGAACACCGTGAA
ACTTGGGGATTTTCGCGCAGGATCTGCATGGGGTGGGGAGCACATCGGGT
GGTATTGGGGGGGGATGACGATTCAAGGACTGCTCCCCTACTATTTCCAC
AAGCTCACCGACCCCACCCGTGCCAAGGAAGTGGACCGCTGCGTCTATAA
CAATATGTTCGACAACCCCGAGTGCAAGAATGCCAGCATCCCTATGATTA
AAAATGTGCATTTTACTGTGTGTCAGAAGCCATGGACTTGCACTACGCAC
GCTAAGAATGCGGCTTGCACGCCATTTATGGAGAAGTGGTTCCAGTTGCG
GAGAGAGGTACGTTTTGGTTCGTAATAAGGAGTGGGCGGACTGTGGGTGT
CATGTACCTTTAGAATGGTAGCAAGCCTGTCAAATGCCCCATGTCGCCTC
TTGTCACATCTACTTTCTCCCTTTCGCTCCCAACTTTTCTTCACATTCAA
CACAGCTCGAGAGCATGGAGACGGGAGCGTATGGAGAAGCGTGCGTACGA
GGAAACTACCGGCCACTAGAATTCCTTCAAGATGATGTGCCGGCGGTGGC
CACAGGTGGAGCAGCGACCCCATAGTAGTTGTAGATGGAGATCATGGATT
GACGAAGAGGATGGAAGAGTAGAAAGCAGGGGTAGCTATGACCATAGACA
CATGAAGTTATGAAGAACAAAATAATGTACGTATATTTGAAGCCGAAACC
TTATTGAACGAGACGTTTGATCAAGGCACATGTATGCTGATGGTGCTG
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protein sequence of NO08G02090.2

>NO08G02090.2-protein ID=NO08G02090.2-protein|Name=NO08G02090.2|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MPKHRGVSVCAGRGEVVSGRFPHGVLERSKFQRRVPTVLKVTIILGAFVF
FALKLTYSRSTQDAITTLDLSSVSSGGQKKLKAQAGRRMDGKTVAYVISV
TADGPYMDGAAVLAHSIRKASTDSKYGIDLIAMVHPNVTTSRAALMRAGW
KVLERDIPLDINEIQGDYLRERIAKNGCCGATELLKLYAWRLTDYHRVVH
LDMDSLLLQPLDELFDLSGKDFLYTCDYGMMTRGSKACPVQGGFLILKPN
EEDFKRLVNTVKLGDFRAGSAWGGEHIGWYWGGMTIQGLLPYYFHKLTDP
TRAKEVDRCVYNNMFDNPECKNASIPMIKNVHFTVCQKPWTCTTHAKNAA
CTPFMEKWFQLRREVRFGS*
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mRNA from alignment at chr8:619927..621954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02090.2 ID=NO08G02090.2|Name=NO08G02090.2|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp|location=Sequence derived from alignment at chr8:619927..621954- (Nannochloropsis oceanica)
ACAGGCAGTACAAATATGCCCAAACATCGAGGCGTCAGCGTCTGTGCTGG
GCGTGGTGAGGTGGTGAGTGGACGTTTCCCGCACGGTGTGCTGGAGCGGA
GCAAGTTCCAAAGACGGGTGCCCACGGTACTGAAGGTCACGATCATCCTC
GGCGCCTTCGTATTTTTTGCCTTGAAGCTCACCTACAGTCGATCAACTCA
GGACGCGATCACAACCTTGGACCTCTCCTCCGTGTCTTCAGGTGGACAGA
AGAAACTGAAAGCGCAGGCAGGCCGGAGGATGGATGGCAAGACGGTCGCC
TATGTCATCTCCGTAACAGCGGACGGGCCCTACATGGACGGGGCTGCTGT
ATTGGCGCACAGTATCCGCAAGGCCTCGACAGACTCTAAGTACGGGATCG
ACCTTATTGCCATGGTCCATCCTAACGTCACCACCTCCCGTGCAGCCCTC
ATGCGCGCCGGCTGGAAGTAAGTTTTCAGGAGGATGGGGAGGGTGGGGCC
TTGGGGGTTGATTTATGCGAGATGTTGGCCTCATCGTATACGCTTTGCTC
TACTTTGTTGTTGAAAAGAAAATGAGAGGGTGCTGCGAATTGTTGCATCC
CAACTGTGGTGCAGGCTGAGCTTGCCGCATCCCTTCGCCCCTCATGCACT
CACGACCCGTTTTCCCCCATTTCCCCCCCCTCTGCATATATATATATATA
TATATATATATATATAGAGTGCTCGAACGAGATATTCCCCTCGACATCAA
TGAAATCCAGGGCGACTACCTGAGAGAGCGTATCGCCAAGAACGGCTGCT
GCGGTGCGACCGAGCTACTGAAGCTCTACGCATGGCGCCTCACTGACTAC
CACCGCGTCGTGCACCTGGACATGGACTCCCTCCTCCTCCAACCCCTCGA
CGAACTATTTGACTTGTCAGGAAAAGATTTCTTGTACACATGTGACTATG
GAATGATGACTAGGGGCTCGAAAGCCTGCCCGGTGCAAGGGGGGTTTCTC
ATCTTGAAGCCCAATGAGGAGGATTTCAAGAGACTGGTGAACACCGTGAA
ACTTGGGGATTTTCGCGCAGGATCTGCATGGGGTGGGGAGCACATCGGGT
GGTATTGGGGGGGGATGACGATTCAAGGTACGGAGGGGGGGTGCTATAGT
GAGTAGGATGGGAGCTGATGGTGAGGAGAGGGGTTGGAATGAGTCAGGAC
GGTTGACGGTGGAGAAAAGGATAGACAGCGGTGTTGGCAGCCCTTCCGCG
TGGCCAAGGGCTGTATAATTTCCCTTTTGTCTTTTCCAAACATGCAAACA
TAAATTCATCTCGCGTCTTTCCTTATTTTTCCTTCCTCTGTACTTTCCAT
TCCTCAGGACTGCTCCCCTACTATTTCCACAAGCTCACCGACCCCACCCG
TGCCAAGGAAGTGGACCGCTGCGTCTATAACAATATGTTCGACAACCCCG
AGTGCAAGAATGCCAGCATCCCTATGATTAAAAATGTGCATTTTACTGTG
TGTCAGAAGCCATGGACTTGCACTACGCACGCTAAGAATGCGGCTTGCAC
GCCATTTATGGAGAAGTGGTTCCAGTTGCGGAGAGAGGTACGTTTTGGTT
CGTAATAAGGAGTGGGCGGACTGTGGGTGTCATGTACCTTTAGAATGGTA
GCAAGCCTGTCAAATGCCCCATGTCGCCTCTTGTCACATCTACTTTCTCC
CTTTCGCTCCCAACTTTTCTTCACATTCAACACAGCTCGAGAGCATGGAG
ACGGGAGCGTATGGAGAAGCGTGCGTACGAGGAAACTACCGGCCACTAGA
ATTCCTTCAAGATGATGTGCCGGCGGTGGCCACAGGTGGAGCAGCGACCC
CATAGTAGTTGTAGATGGAGATCATGGATTGACGAAGAGGATGGAAGAGT
AGAAAGCAGGGGTAGCTATGACCATAGACACATGAAGTTATGAAGAACAA
AATAATGTACGTATATTTGAAGCCGAAACCTTATTGAACGAGACGTTTGA
TCAAGGCACATGTATGCTGATGGTGCTG
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Coding sequence (CDS) from alignment at chr8:619927..621954-

>NO08G02090.2 ID=NO08G02090.2|Name=NO08G02090.2|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr8:619927..621954- (Nannochloropsis oceanica)
ATGCCCAAACATCGAGGCGTCAGCGTCTGTGCTGGGCGTGGTGAGGTGGT
GAGTGGACGTTTCCCGCACGGTGTGCTGGAGCGGAGCAAGTTCCAAAGAC
GGGTGCCCACGGTACTGAAGGTCACGATCATCCTCGGCGCCTTCGTATTT
TTTGCCTTGAAGCTCACCTACAGTCGATCAACTCAGGACGCGATCACAAC
CTTGGACCTCTCCTCCGTGTCTTCAGGTGGACAGAAGAAACTGAAAGCGC
AGGCAGGCCGGAGGATGGATGGCAAGACGGTCGCCTATGTCATCTCCGTA
ACAGCGGACGGGCCCTACATGGACGGGGCTGCTGTATTGGCGCACAGTAT
CCGCAAGGCCTCGACAGACTCTAAGTACGGGATCGACCTTATTGCCATGG
TCCATCCTAACGTCACCACCTCCCGTGCAGCCCTCATGCGCGCCGGCTGG
AAAGTGCTCGAACGAGATATTCCCCTCGACATCAATGAAATCCAGGGCGA
CTACCTGAGAGAGCGTATCGCCAAGAACGGCTGCTGCGGTGCGACCGAGC
TACTGAAGCTCTACGCATGGCGCCTCACTGACTACCACCGCGTCGTGCAC
CTGGACATGGACTCCCTCCTCCTCCAACCCCTCGACGAACTATTTGACTT
GTCAGGAAAAGATTTCTTGTACACATGTGACTATGGAATGATGACTAGGG
GCTCGAAAGCCTGCCCGGTGCAAGGGGGGTTTCTCATCTTGAAGCCCAAT
GAGGAGGATTTCAAGAGACTGGTGAACACCGTGAAACTTGGGGATTTTCG
CGCAGGATCTGCATGGGGTGGGGAGCACATCGGGTGGTATTGGGGGGGGA
TGACGATTCAAGGACTGCTCCCCTACTATTTCCACAAGCTCACCGACCCC
ACCCGTGCCAAGGAAGTGGACCGCTGCGTCTATAACAATATGTTCGACAA
CCCCGAGTGCAAGAATGCCAGCATCCCTATGATTAAAAATGTGCATTTTA
CTGTGTGTCAGAAGCCATGGACTTGCACTACGCACGCTAAGAATGCGGCT
TGCACGCCATTTATGGAGAAGTGGTTCCAGTTGCGGAGAGAGGTACGTTT
TGGTTCGTAA
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Synonyms
Publications