NO08G01990.1, NO08G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01990.1
Unique NameNO08G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length576
Alignment locationchr8:598269..599013 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:598269..599013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01990NO08G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01990.1NO08G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01990.1.cds1NO08G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01990.1.cds2NO08G01990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01990.1 ID=NO08G01990.1|Name=NO08G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
ATGGCGGTGTACGCGGGGAAGCAGAAGGTCTTGGATGGCTTTTCTGCGGG
CTCGACGCGTCCAGGGCAGGCAAAGCCCATTATCGCGTATGGGGCAAGGG
TTTTCCCGCACACAGGCAAGGGAGAGGTGAGCGTTCCGGTGAAGAGGGTG
CACCGGGTGTGCGAAAAGCACTACAGGACAGTGTATGTACCCGAGCACCT
GACGACAAAGGTGCACCTCGATTGTGGGCAGCGCCTAAACCCTATCGCGA
GAGGGGCGGGAGGGGAGCAGGGGAAGGGGAAGGAGGAGGAGGGGAAGGAA
GAGGATGAGGTGGACGAGGAGGAGGAGGAAGAGGAGGAGGAGGCGGCGGA
AGAAGAAGAGAAGGAGGAGAAGGACGAGGAGATGGAGGGGGAGAAGGATT
CCAAGGTGGCAGTCGCAGAGGCACGAGCCCGGGCAGCTGCAGGAGGAGGA
GGAGGAGGAGGGGGAAGGGATAACATGATGGACACAAGAGGGGATCGGGG
AAGGGTAGGAGTTGGAGGATTCGGGGCGGCCGAAGCAGCTACAGGAGGAG
GGGGGGGGAGGGGGAGGGGGAACTAA
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protein sequence of NO08G01990.1

>NO08G01990.1-protein ID=NO08G01990.1-protein|Name=NO08G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MAVYAGKQKVLDGFSAGSTRPGQAKPIIAYGARVFPHTGKGEVSVPVKRV
HRVCEKHYRTVYVPEHLTTKVHLDCGQRLNPIARGAGGEQGKGKEEEGKE
EDEVDEEEEEEEEEAAEEEEKEEKDEEMEGEKDSKVAVAEARARAAAGGG
GGGGGRDNMMDTRGDRGRVGVGGFGAAEAATGGGGGRGRGN*
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mRNA from alignment at chr8:598269..599013+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01990.1 ID=NO08G01990.1|Name=NO08G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=745bp|location=Sequence derived from alignment at chr8:598269..599013+ (Nannochloropsis oceanica)
ATGGCGGTGTACGCGGGGAAGCAGAAGGTCTTGGATGGCTTTTCTGCGGG
CTCGACGCGTCCAGGGCAGGCAAAGCCCATTATCGCGTATGGGGCAAGGG
TTTTCCCGCACACAGGCAAGGGAGAGGTGAGCGTTCCGGTGAAGAGGGTG
CACCGGGTGTGCGAAAAGCACTACAGGACAGTGTATGTACCCGAGCACCT
GACGACAAAGGTGCACCTCGATTGTGGGCAGCGCCTAAACCCTATCGCGA
GAGGGGCGGGAGGGGAGCAGGGGAAGGGGAAGGAGGAGGAGGGGAAGGAA
GAGGATGAGGTGGACGAGGAGGAGGAGGAAGAGGAGGAGGAGGCGGCGGA
AGAAGAAGAGAAGGAGGAGAAGGACGAGGAGATGGAGGGGGAGAAGGATT
CCAAGGTACGGAAGCTGGAGGAAAAACGGAAATGGGAGGGAGGGATATGC
GGGAGCCAGTGCAACATCAGCACCAGCACCAACACCAGCAGTAGGAGGAG
GGGGAGGAAGAAGAGGGAAAAGAACCTGGGCTGCAGAAGCAGCAGCAGCC
GCCCGGATGCGGCTGACCATACAGGTGGCAGTCGCAGAGGCACGAGCCCG
GGCAGCTGCAGGAGGAGGAGGAGGAGGAGGGGGAAGGGATAACATGATGG
ACACAAGAGGGGATCGGGGAAGGGTAGGAGTTGGAGGATTCGGGGCGGCC
GAAGCAGCTACAGGAGGAGGGGGGGGGAGGGGGAGGGGGAACTAA
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Coding sequence (CDS) from alignment at chr8:598269..599013+

>NO08G01990.1 ID=NO08G01990.1|Name=NO08G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr8:598269..599013+ (Nannochloropsis oceanica)
ATGGCGGTGTACGCGGGGAAGCAGAAGGTCTTGGATGGCTTTTCTGCGGG
CTCGACGCGTCCAGGGCAGGCAAAGCCCATTATCGCGTATGGGGCAAGGG
TTTTCCCGCACACAGGCAAGGGAGAGGTGAGCGTTCCGGTGAAGAGGGTG
CACCGGGTGTGCGAAAAGCACTACAGGACAGTGTATGTACCCGAGCACCT
GACGACAAAGGTGCACCTCGATTGTGGGCAGCGCCTAAACCCTATCGCGA
GAGGGGCGGGAGGGGAGCAGGGGAAGGGGAAGGAGGAGGAGGGGAAGGAA
GAGGATGAGGTGGACGAGGAGGAGGAGGAAGAGGAGGAGGAGGCGGCGGA
AGAAGAAGAGAAGGAGGAGAAGGACGAGGAGATGGAGGGGGAGAAGGATT
CCAAGGTGGCAGTCGCAGAGGCACGAGCCCGGGCAGCTGCAGGAGGAGGA
GGAGGAGGAGGGGGAAGGGATAACATGATGGACACAAGAGGGGATCGGGG
AAGGGTAGGAGTTGGAGGATTCGGGGCGGCCGAAGCAGCTACAGGAGGAG
GGGGGGGGAGGGGGAGGGGGAACTAA
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Synonyms
Publications