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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:595066..597030 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01970.1 vs.
Match: EWM26742.1 (e3 ubiquitin-protein ligase rnf8 [Nannochloropsis gaditana]) HSP 1 Score: 551.2 bits (1419), Expect = 4.300e-153 Identity = 376/659 (57.06%), Postives = 441/659 (66.92%), Query Frame = 0
Query: 1 MARRSLSQNLPNLVKGGCTVGAVTYQSAAARAYHDEADDASVGGVGRDSTVLTGSSTSNNSSGRAEEVVLQRGALKVAGRSATMEQASSSSSSPDRHISVQEVEEASRILFAPQGTAATAAVAHSHHHHNHHDTVASSSFRESNELLSGMSARGGGRRTAETSDSVEEE-DLACKDKGSISPSTPSIFRVHRQPSPSCSSSPAVAAAAAAAASAASAVAVTPSSSVSRTTLTRLHPQPEVHAEILRFGMALANNPKIQSAIREELEMHHVHHVQQQEHLEGGREGGREGGLDSAEATVVQMESNVRRIFCQGVA--GGEEEEEEEEVGRQE--GSGTSGSTGSSSCSPLTGSFELLEAMSTEWAQAQAQQEDNEDGEEGKFEEEHLAENVPSNCFVSVGRNMRRKDSLAGEVSDEVLDELLRGDDDDDVIAQRLFAQTPDEQVRRYLRNLDLECVICCEYMVECKAVDCGEGHTFCGECIEQWLGREGGREGGGRCPTCQKPCGTTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHIRRALERQDREEEEAAAAATAATGSQNLFAGLGYLLFGLGGSSGAGATRRRRRNRQAVAEASEAGGGGGVAGVGSARGEGGRAEDAAQPWWKSEVLSTALSVATMLVLLVLFKRGIKIR 655
MARR LS NLPN VKGGCTVGA TYQS AAR +HD+ DD S GGVGRDSTVLT +T+ RAEEV +Q ALK A S A S D IS +EVEEASRILFAP+G A SH H HH A+ E+N+L +S G +T+E + VE D A +DK ++ + + +P+ S P + + + S +A PS T L RLHPQPEVHAEILRFG ALA+NP+IQ+AI EEL+MH+ + E REG E +AE ++ QMES VRR+ + A E +E E G +E G G++G S S LT SFE+L AMS EW+ A ++ E E+ E E +AEN+PSN FVSVGR MRRKDSLAGEVSDEVLDELLR +DDDDVIAQ+LFA+TPD+QVRR+LRNLDLECVIC EYMVE AVDCGEGHTFCGECIE+WL E GG RCPTCQKP +TIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAH+RR +ERQDREEEE A AAT Q FAG+G LFGLG + A A R+RRR+R+A A A+ A AG G+GG A +AAQPWWKSE+LSTALSVATMLVLLVLFKRG K R
Sbjct: 1 MARRGLSHNLPNYVKGGCTVGACTYQSQAARTFHDDDDDDS-GGVGRDSTVLTTDTTTGE---RAEEVRVQSNALKDANLSPVATPAPHLSR--DCTISAREVEEASRILFAPEG-------ATSHFH--HHRAEAAYQDSEANKLQKRVS---GAAKTSERAPQVEAGIDEAVEDKQRVN--------LAKGMAPTQSLPPMLRTRSPVSRS----LAPLPS-----TLLARLHPQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFE-----REGTGENDEGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGGGYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAE--EKVGNEREDMAENLPSNSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWL--ELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAAT-----QGPFAGIGN-LFGLG--TRANARRQRRRSRRATAAATRA-----AAGASRTTGDGG-AGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFKTR 601
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01970.1 ID=NO08G01970.1|Name=NO08G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
ATGGCGCGTCGTAGCTTGTCGCAAAATTTGCCGAACTTGGTCAAGGGAGG
CTGCACCGTAGGGGCCGTCACTTATCAATCCGCTGCGGCTCGTGCGTACC
ACGACGAAGCAGATGATGCTTCTGTTGGTGGGGTCGGCCGCGACTCGACT
GTTTTGACGGGCAGCAGTACTAGCAACAACTCCTCCGGGCGAGCGGAAGA
AGTGGTATTGCAAAGGGGTGCCTTGAAAGTTGCTGGGAGGTCGGCTACTA
TGGAGCAGGCGTCGTCCTCTTCTTCCTCGCCGGACCGACATATCAGTGTC
CAGGAGGTTGAAGAGGCTTCTCGCATTCTTTTTGCACCCCAAGGCACCGC
TGCCACTGCAGCCGTAGCGCATAGTCACCACCATCACAACCACCATGATA
CTGTGGCCTCGTCGTCGTTTCGGGAGTCGAACGAGTTGTTGTCTGGCATG
TCTGCCCGGGGAGGAGGACGACGAACCGCTGAAACTTCTGATTCTGTGGA
AGAAGAAGACCTAGCCTGCAAGGACAAAGGGAGCATCTCACCGTCGACTC
CATCCATATTCCGTGTACATCGCCAACCCTCCCCTTCTTGCTCGTCTTCC
CCTGCCGTTGCCGCCGCCGCTGCTGCTGCTGCTTCAGCTGCTTCCGCTGT
TGCTGTTACTCCCTCCTCATCTGTCTCTCGCACAACTCTCACACGCTTAC
ACCCCCAGCCGGAAGTCCATGCAGAGATATTACGGTTCGGAATGGCCTTG
GCCAACAACCCCAAAATCCAAAGTGCGATTCGAGAGGAGTTAGAAATGCA
TCATGTGCATCATGTGCAGCAACAGGAGCACCTGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGACTAGATTCAGCGGAGGCAACAGTGGTCCAGATG
GAGTCGAACGTGCGGAGGATTTTCTGTCAAGGAGTGGCGGGAGGAGAGGA
GGAGGAGGAAGAGGAGGAGGTAGGGAGGCAGGAGGGAAGTGGGACCTCGG
GAAGTACTGGCAGCAGCAGTTGCAGCCCTTTGACAGGGTCGTTTGAGTTG
TTAGAGGCAATGAGTACTGAATGGGCTCAAGCCCAGGCACAGCAAGAGGA
TAACGAGGATGGGGAAGAAGGAAAATTCGAAGAGGAACATCTTGCGGAAA
ATGTGCCGTCGAATTGTTTCGTGAGTGTCGGGAGGAATATGCGGAGGAAA
GATAGCTTGGCGGGGGAGGTCTCAGACGAGGTGCTGGACGAGCTGCTGAG
GGGGGATGATGACGACGATGTCATCGCTCAGAGGTTATTCGCCCAGACGC
CAGATGAGCAGGTGAGGCGTTACTTGCGGAATCTGGACCTGGAGTGCGTG
ATATGCTGTGAGTACATGGTGGAGTGCAAAGCGGTGGACTGTGGGGAGGG
GCATACGTTTTGTGGGGAGTGTATTGAACAGTGGTTGGGGAGGGAGGGAG
GCAGGGAGGGAGGGGGAAGGTGTCCCACGTGTCAGAAGCCGTGTGGGACG
ACCATTCCCATGAGGCAGTATGACGCCATGATTGAGAAGTATGTTCGAGC
TTCGAATCTGTGGGATGAGCAGTGCTCATTCTATCGTCGTCGCACGCTGG
CACATATACGCCGGGCGCTCGAGAGGCAGGATCGGGAAGAGGAAGAAGCA
GCAGCAGCAGCCACAGCGGCGACGGGAAGCCAGAACCTGTTTGCGGGTTT
GGGATATCTGCTGTTCGGACTGGGAGGGTCAAGTGGGGCAGGGGCGACGC
GGCGGCGGAGGAGGAACCGTCAGGCAGTTGCAGAGGCTTCGGAGGCTGGT
GGTGGTGGTGGTGTGGCGGGTGTAGGGTCCGCGAGGGGGGAGGGGGGCAG
GGCAGAGGACGCGGCGCAGCCATGGTGGAAGAGTGAGGTGCTGAGCACGG
CCTTGTCGGTGGCGACGATGCTTGTCTTACTGGTATTGTTCAAAAGGGGG
ATCAAAATCCGTTAG back to topprotein sequence of NO08G01970.1 >NO08G01970.1-protein ID=NO08G01970.1-protein|Name=NO08G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=655bp
MARRSLSQNLPNLVKGGCTVGAVTYQSAAARAYHDEADDASVGGVGRDST
VLTGSSTSNNSSGRAEEVVLQRGALKVAGRSATMEQASSSSSSPDRHISV
QEVEEASRILFAPQGTAATAAVAHSHHHHNHHDTVASSSFRESNELLSGM
SARGGGRRTAETSDSVEEEDLACKDKGSISPSTPSIFRVHRQPSPSCSSS
PAVAAAAAAAASAASAVAVTPSSSVSRTTLTRLHPQPEVHAEILRFGMAL
ANNPKIQSAIREELEMHHVHHVQQQEHLEGGREGGREGGLDSAEATVVQM
ESNVRRIFCQGVAGGEEEEEEEEVGRQEGSGTSGSTGSSSCSPLTGSFEL
LEAMSTEWAQAQAQQEDNEDGEEGKFEEEHLAENVPSNCFVSVGRNMRRK
DSLAGEVSDEVLDELLRGDDDDDVIAQRLFAQTPDEQVRRYLRNLDLECV
ICCEYMVECKAVDCGEGHTFCGECIEQWLGREGGREGGGRCPTCQKPCGT
TIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHIRRALERQDREEEEA
AAAATAATGSQNLFAGLGYLLFGLGGSSGAGATRRRRRNRQAVAEASEAG
GGGGVAGVGSARGEGGRAEDAAQPWWKSEVLSTALSVATMLVLLVLFKRG
IKIR* back to topmRNA from alignment at chr8:595066..597030- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01970.1 ID=NO08G01970.1|Name=NO08G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp|location=Sequence derived from alignment at chr8:595066..597030- (Nannochloropsis oceanica)
ATGGCGCGTCGTAGCTTGTCGCAAAATTTGCCGAACTTGGTCAAGGGAGG
CTGCACCGTAGGGGCCGTCACTTATCAATCCGCTGCGGCTCGTGCGTACC
ACGACGAAGCAGATGATGCTTCTGTTGGTGGGGTCGGCCGCGACTCGACT
GTTTTGACGGGCAGCAGTACTAGCAACAACTCCTCCGGGCGAGCGGAAGA
AGTGGTATTGCAAAGGGGTGCCTTGAAAGTTGCTGGGAGGTCGGCTACTA
TGGAGCAGGCGTCGTCCTCTTCTTCCTCGCCGGACCGACATATCAGTGTC
CAGGAGGTTGAAGAGGCTTCTCGCATTCTTTTTGCACCCCAAGGCACCGC
TGCCACTGCAGCCGTAGCGCATAGTCACCACCATCACAACCACCATGATA
CTGTGGCCTCGTCGTCGTTTCGGGAGTCGAACGAGTTGTTGTCTGGCATG
TCTGCCCGGGGAGGAGGACGACGAACCGCTGAAACTTCTGATTCTGTGGA
AGAAGAAGACCTAGCCTGCAAGGACAAAGGGAGCATCTCACCGTCGACTC
CATCCATATTCCGTGTACATCGCCAACCCTCCCCTTCTTGCTCGTCTTCC
CCTGCCGTTGCCGCCGCCGCTGCTGCTGCTGCTTCAGCTGCTTCCGCTGT
TGCTGTTACTCCCTCCTCATCTGTCTCTCGCACAACTCTCACACGCTTAC
ACCCCCAGCCGGAAGTCCATGCAGAGATATTACGGTTCGGAATGGCCTTG
GCCAACAACCCCAAAATCCAAAGTGCGATTCGAGAGGAGTTAGAAATGCA
TCATGTGCATCATGTGCAGCAACAGGAGCACCTGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGACTAGATTCAGCGGAGGCAACAGTGGTCCAGATG
GAGTCGAACGTGCGGAGGATTTTCTGTCAAGGAGTGGCGGGAGGAGAGGA
GGAGGAGGAAGAGGAGGAGGTAGGGAGGCAGGAGGGAAGTGGGACCTCGG
GAAGTACTGGCAGCAGCAGTTGCAGCCCTTTGACAGGGTCGTTTGAGTTG
TTAGAGGCAATGAGTACTGAATGGGCTCAAGCCCAGGCACAGCAAGAGGA
TAACGAGGATGGGGAAGAAGGAAAATTCGAAGAGGAACATCTTGCGGAAA
ATGTGCCGTCGAATTGTTTCGTGAGTGTCGGGAGGAATATGCGGAGGAAA
GATAGCTTGGCGGGGGAGGTCTCAGACGAGGTGCTGGACGAGCTGCTGAG
GGGGGATGATGACGACGATGTCATCGCTCAGAGGTTATTCGCCCAGACGC
CAGATGAGCAGGTGAGGCGTTACTTGCGGAATCTGGACCTGGAGTGCGTG
ATATGCTGTGAGTACATGGTGGAGTGCAAAGCGGTGGACTGTGGGGAGGG
GCATACGTTTTGTGGGGAGTGTATTGAACAGTGGTTGGGGAGGGAGGGAG
GCAGGGAGGGAGGGGGAAGGTGTCCCACGTGTCAGAAGCCGTGTGGGACG
ACCATTCCCATGAGGCAGTATGACGCCATGATTGAGAAGTATGTTCGAGC
TTCGAATCTGTGGGATGAGCAGTGCTCATTCTATCGTCGTCGCACGCTGG
CACATATACGCCGGGCGCTCGAGAGGCAGGATCGGGAAGAGGAAGAAGCA
GCAGCAGCAGCCACAGCGGCGACGGGAAGCCAGAACCTGTTTGCGGGTTT
GGGATATCTGCTGTTCGGACTGGGAGGGTCAAGTGGGGCAGGGGCGACGC
GGCGGCGGAGGAGGAACCGTCAGGCAGTTGCAGAGGCTTCGGAGGCTGGT
GGTGGTGGTGGTGTGGCGGGTGTAGGGTCCGCGAGGGGGGAGGGGGGCAG
GGCAGAGGACGCGGCGCAGCCATGGTGGAAGAGTGAGGTGCTGAGCACGG
CCTTGTCGGTGGCGACGATGCTTGTCTTACTGGTATTGTTCAAAAGGGGG
ATCAAAATCCGTTAG back to topCoding sequence (CDS) from alignment at chr8:595066..597030- >NO08G01970.1 ID=NO08G01970.1|Name=NO08G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=1965bp|location=Sequence derived from alignment at chr8:595066..597030- (Nannochloropsis oceanica)
ATGGCGCGTCGTAGCTTGTCGCAAAATTTGCCGAACTTGGTCAAGGGAGG
CTGCACCGTAGGGGCCGTCACTTATCAATCCGCTGCGGCTCGTGCGTACC
ACGACGAAGCAGATGATGCTTCTGTTGGTGGGGTCGGCCGCGACTCGACT
GTTTTGACGGGCAGCAGTACTAGCAACAACTCCTCCGGGCGAGCGGAAGA
AGTGGTATTGCAAAGGGGTGCCTTGAAAGTTGCTGGGAGGTCGGCTACTA
TGGAGCAGGCGTCGTCCTCTTCTTCCTCGCCGGACCGACATATCAGTGTC
CAGGAGGTTGAAGAGGCTTCTCGCATTCTTTTTGCACCCCAAGGCACCGC
TGCCACTGCAGCCGTAGCGCATAGTCACCACCATCACAACCACCATGATA
CTGTGGCCTCGTCGTCGTTTCGGGAGTCGAACGAGTTGTTGTCTGGCATG
TCTGCCCGGGGAGGAGGACGACGAACCGCTGAAACTTCTGATTCTGTGGA
AGAAGAAGACCTAGCCTGCAAGGACAAAGGGAGCATCTCACCGTCGACTC
CATCCATATTCCGTGTACATCGCCAACCCTCCCCTTCTTGCTCGTCTTCC
CCTGCCGTTGCCGCCGCCGCTGCTGCTGCTGCTTCAGCTGCTTCCGCTGT
TGCTGTTACTCCCTCCTCATCTGTCTCTCGCACAACTCTCACACGCTTAC
ACCCCCAGCCGGAAGTCCATGCAGAGATATTACGGTTCGGAATGGCCTTG
GCCAACAACCCCAAAATCCAAAGTGCGATTCGAGAGGAGTTAGAAATGCA
TCATGTGCATCATGTGCAGCAACAGGAGCACCTGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGACTAGATTCAGCGGAGGCAACAGTGGTCCAGATG
GAGTCGAACGTGCGGAGGATTTTCTGTCAAGGAGTGGCGGGAGGAGAGGA
GGAGGAGGAAGAGGAGGAGGTAGGGAGGCAGGAGGGAAGTGGGACCTCGG
GAAGTACTGGCAGCAGCAGTTGCAGCCCTTTGACAGGGTCGTTTGAGTTG
TTAGAGGCAATGAGTACTGAATGGGCTCAAGCCCAGGCACAGCAAGAGGA
TAACGAGGATGGGGAAGAAGGAAAATTCGAAGAGGAACATCTTGCGGAAA
ATGTGCCGTCGAATTGTTTCGTGAGTGTCGGGAGGAATATGCGGAGGAAA
GATAGCTTGGCGGGGGAGGTCTCAGACGAGGTGCTGGACGAGCTGCTGAG
GGGGGATGATGACGACGATGTCATCGCTCAGAGGTTATTCGCCCAGACGC
CAGATGAGCAGGTGAGGCGTTACTTGCGGAATCTGGACCTGGAGTGCGTG
ATATGCTGTGAGTACATGGTGGAGTGCAAAGCGGTGGACTGTGGGGAGGG
GCATACGTTTTGTGGGGAGTGTATTGAACAGTGGTTGGGGAGGGAGGGAG
GCAGGGAGGGAGGGGGAAGGTGTCCCACGTGTCAGAAGCCGTGTGGGACG
ACCATTCCCATGAGGCAGTATGACGCCATGATTGAGAAGTATGTTCGAGC
TTCGAATCTGTGGGATGAGCAGTGCTCATTCTATCGTCGTCGCACGCTGG
CACATATACGCCGGGCGCTCGAGAGGCAGGATCGGGAAGAGGAAGAAGCA
GCAGCAGCAGCCACAGCGGCGACGGGAAGCCAGAACCTGTTTGCGGGTTT
GGGATATCTGCTGTTCGGACTGGGAGGGTCAAGTGGGGCAGGGGCGACGC
GGCGGCGGAGGAGGAACCGTCAGGCAGTTGCAGAGGCTTCGGAGGCTGGT
GGTGGTGGTGGTGTGGCGGGTGTAGGGTCCGCGAGGGGGGAGGGGGGCAG
GGCAGAGGACGCGGCGCAGCCATGGTGGAAGAGTGAGGTGCTGAGCACGG
CCTTGTCGGTGGCGACGATGCTTGTCTTACTGGTATTGTTCAAAAGGGGG
ATCAAAATCCGTTAG back to top
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