|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:590824..592676 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01950.1 vs.
Match: EWM26594.1 (riboflavin transporter 2 [Nannochloropsis gaditana]) HSP 1 Score: 496.1 bits (1276), Expect = 1.400e-136 Identity = 297/526 (56.46%), Postives = 355/526 (67.49%), Query Frame = 0
Query: 13 PPKLPPAPPPWALHAAFTALGLSSFMLSNALWAEMAAFVAALPEADKLGSYLLLSLQVANVVPAAVMLRGPEAMHLESVIWILLLGGILTSQLMSFCWSSTTDMSNGNMEDSNSSHSIALIILTFFAGSINNSSSLYLYPFVAQWESRYISALATGEGLSGILVSLLALAQNVGGRHPRFSVTAFFQGVSAFYLFSVLGFSYLLREQKRQEARKMTSTATAPRAAATVAEETRHASDVSAYKRLLLLHQSTTHEENEESTLVLPLSSPSFSFSPSVPKEKPVLHLIYPLLLAQFGISAWAYGVIPALTPISTGGYQHSGKILQFSSFVSMALDPLSRALTHYCRCYRLVLLFGIVNLLAILLAVAAGMAPRPPFWEWEGGGVFVVVVNGGFTAAFAFCSTMFYFSIRLALQLRSEQEEENGKEGRESGAGGGVMGVQAAAAFETCAMKEGEETEEGEQGNEVGSDRVDFGVPASTEEGGRDEGREDEEKQQLERGQLLRWQEGFRWSSFVIQIGAFVGALLTFLLV 539
P K PP PPWAL AAFTALGLSSFMLSNALWAEM A V+ALPE +KLGSYLLLSLQ ANVVP MLRGPE +HLES+IW LLLGG++ SQLMSFCW++TT + SH+++LI+LTF AG INNSSSL+LYPFVA+WE RY+SALATGEGLSGILVSL+ L QNVGG PRFSV A+FQGVSA Y+FS+LGF +LL+E++ ++AR S VAEE A A KR+LL + ++ + LV+PLS+P+ + PVL LI+P LLAQFGIS WAYGVIPALTPIST GYQH+ +LQ+SS VSMALDPLSRALTH RCYRL LL +VN+LA +L VAA ++PRPPF + GG+FVV NG FTAAFAF STM +F I AL R R +G G+Q + CA+ G+ G V G E + G EE E Q+LR Q+GFRWS F++Q+GAFVGAL TFLLV
Sbjct: 6 PLKAPPPAPPWALQAAFTALGLSSFMLSNALWAEMPALVSALPEGNKLGSYLLLSLQAANVVPVIAMLRGPEVVHLESIIWALLLGGVVASQLMSFCWAATTPIPGAG----GKSHALSLILLTFLAGCINNSSSLFLYPFVARWERRYVSALATGEGLSGILVSLIGLTQNVGGARPRFSVRAYFQGVSALYVFSLLGFLFLLQEERHKKARVALSMDRV------VAEERETAWQGGAKKRVLL-----SVKDEDSDALVVPLSAPTLA-------PAPVLALIWPFLLAQFGISLWAYGVIPALTPISTSGYQHAAHVLQYSSIVSMALDPLSRALTHRLRCYRLPLLVVLVNVLATVLCVAAAISPRPPFVDQPLGGLFVVFFNGAFTAAFAFTSTMVFFCIHRALGPRHGLPLP--VHARRAGGADEAPGLQE----DACALMVGQRRGGGRP--------VSIGRGEGEGEHAGEVGPGGEE----EFVQVLRRQDGFRWSGFIVQVGAFVGALATFLLV 491
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01950.1 ID=NO08G01950.1|Name=NO08G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp ATGGCAAGCGTCATTCGCCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCC GCCTGCCCCTCCACCATGGGCACTTCATGCTGCCTTCACGGCCCTGGGTC TGTCGTCCTTTATGCTGTCAAATGCACTATGGGCGGAGATGGCAGCCTTT GTTGCTGCGTTGCCGGAAGCCGATAAGCTAGGAAGCTATTTGCTATTGTC GCTCCAGGTTGCCAATGTCGTCCCAGCTGCAGTCATGCTCCGCGGCCCCG AAGCAATGCACCTCGAATCCGTCATTTGGATCCTCCTCCTCGGCGGCATC CTCACAAGTCAGCTCATGAGCTTCTGTTGGTCCTCTACCACAGACATGAG CAACGGCAACATGGAAGACAGCAACAGTTCCCATTCAATCGCCTTGATCA TTTTGACTTTCTTTGCAGGCTCGATTAATAACTCCTCCTCACTCTACCTC TACCCCTTCGTCGCGCAATGGGAAAGTCGCTACATCTCCGCCCTAGCCAC AGGAGAGGGCTTATCAGGCATATTGGTATCTTTATTGGCGCTCGCTCAAA ATGTAGGGGGGAGGCATCCGAGGTTTTCGGTAACTGCATTTTTCCAGGGC GTCAGTGCCTTTTACCTCTTTTCGGTGCTTGGCTTCTCGTACCTCTTAAG GGAGCAGAAACGACAGGAAGCACGCAAGATGACCTCAACAGCAACAGCGC CGAGAGCAGCAGCAACAGTAGCAGAGGAAACAAGACACGCATCCGACGTA TCAGCTTATAAACGCCTCCTCCTCCTCCACCAAAGCACCACCCACGAGGA AAACGAAGAGAGCACCCTCGTCCTCCCTCTCTCCTCCCCATCTTTCTCCT TCTCCCCCTCCGTTCCCAAAGAGAAACCCGTCCTCCACCTTATTTACCCT CTATTACTTGCTCAATTCGGAATCAGTGCCTGGGCCTATGGCGTCATTCC TGCCCTCACCCCAATCTCGACAGGGGGGTATCAACATAGTGGGAAGATAT TACAATTTTCATCCTTTGTCTCCATGGCACTCGATCCACTCTCGCGGGCT TTGACTCACTATTGTCGATGTTATCGTCTTGTTTTGCTGTTTGGAATTGT GAATTTGCTGGCGATACTCTTGGCGGTGGCGGCAGGGATGGCCCCCCGAC CTCCCTTTTGGGAGTGGGAGGGAGGAGGGGTGTTTGTGGTTGTTGTGAAT GGAGGGTTCACGGCGGCATTTGCGTTCTGTTCAACGATGTTTTACTTTAG CATTCGTTTGGCGCTGCAATTGCGGAGTGAGCAAGAGGAGGAGAACGGAA AGGAAGGGAGAGAGAGTGGGGCGGGAGGGGGAGTGATGGGGGTGCAGGCG GCGGCTGCGTTTGAGACGTGTGCTATGAAGGAGGGAGAGGAGACGGAGGA AGGGGAGCAAGGAAACGAAGTTGGTAGTGACAGAGTAGATTTTGGTGTGC CCGCATCGACGGAGGAGGGGGGAAGGGATGAAGGAAGAGAAGACGAGGAG AAGCAGCAGTTGGAGCGAGGGCAGCTGTTGAGATGGCAGGAGGGATTCAG GTGGTCGAGTTTTGTGATCCAGATAGGGGCATTCGTGGGTGCCTTGCTGA CATTTCTGCTTGTCAGGTAGAGTTCTTAAGCCCTCCTCCTTACGGTTTTG AGTGAAAGCGGGTTAAGCAGAAGGGGTGGAAAAATTACAAAATAAAACGC TCTGTACACTAATTATAGAAACCTCATTTTTGG back to topprotein sequence of NO08G01950.1 >NO08G01950.1-protein ID=NO08G01950.1-protein|Name=NO08G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp MASVIRHSSSSFPPKLPPAPPPWALHAAFTALGLSSFMLSNALWAEMAAF VAALPEADKLGSYLLLSLQVANVVPAAVMLRGPEAMHLESVIWILLLGGI LTSQLMSFCWSSTTDMSNGNMEDSNSSHSIALIILTFFAGSINNSSSLYL YPFVAQWESRYISALATGEGLSGILVSLLALAQNVGGRHPRFSVTAFFQG VSAFYLFSVLGFSYLLREQKRQEARKMTSTATAPRAAATVAEETRHASDV SAYKRLLLLHQSTTHEENEESTLVLPLSSPSFSFSPSVPKEKPVLHLIYP LLLAQFGISAWAYGVIPALTPISTGGYQHSGKILQFSSFVSMALDPLSRA LTHYCRCYRLVLLFGIVNLLAILLAVAAGMAPRPPFWEWEGGGVFVVVVN GGFTAAFAFCSTMFYFSIRLALQLRSEQEEENGKEGRESGAGGGVMGVQA AAAFETCAMKEGEETEEGEQGNEVGSDRVDFGVPASTEEGGRDEGREDEE KQQLERGQLLRWQEGFRWSSFVIQIGAFVGALLTFLLVR* back to topmRNA from alignment at chr8:590824..592676- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01950.1 ID=NO08G01950.1|Name=NO08G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at chr8:590824..592676- (Nannochloropsis oceanica) ATGGCAAGCGTCATTCGCCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCC
GCCTGCCCCTCCACCATGGGCACTTCATGCTGCCTTCACGGCCCTGGGTC
TGTCGTCCTTTATGCTGTCAAATGCACTATGGGCGGAGATGGCAGCCTTT
GTTGCTGCGTTGCCGGAAGCCGATAAGCTAGGAAGCTATTTGCTATTGTC
GCTCCAGGTAGGAAAGGGCTCAAGAGGAAGGGGGCTAGCATGCATGCGGT
GGGACCCGAAGCAAGCCCTACTCCCAGCTCATGTCATCCCCATTCTCAAC
GACACGACACCCTCGCCTCACCCGCAGGTTGCCAATGTCGTCCCAGCTGC
AGTCATGCTCCGCGGCCCCGAAGCAATGCACCTCGAATCCGTCATTTGGA
TCCTCCTCCTCGGCGGCATCCTCACAAGTCAGCTCATGAGCTTCTGTTGG
TCCTCTACCACAGACATGAGCAACGGCAACATGGAAGACAGCAACAGTTC
CCATTCAATCGCCTTGATCATTTTGACTTTCTTTGCAGGCTCGATTAATA
ACTCCTCCTCACTCTACCTCTACCCCTTCGTCGCGCAATGGGAAAGTCGC
TACATCTCCGCCCTAGCCACAGGAGAGGGCTTATCAGGCATATTGGTATC
TTTATTGGCGCTCGCTCAAAATGTAGGGGGGAGGCATCCGAGGTTTTCGG
TAACTGCATTTTTCCAGGGCGTCAGTGCCTTTTACCTCTTTTCGGTGCTT
GGCTTCTCGTACCTCTTAAGGGAGCAGAAACGACAGGAAGCACGCAAGAT
GACCTCAACAGCAACAGCGCCGAGAGCAGCAGCAACAGTAGCAGAGGAAA
CAAGACACGCATCCGACGTATCAGCTTATAAACGCCTCCTCCTCCTCCAC
CAAAGCACCACCCACGAGGAAAACGAAGAGAGCACCCTCGTCCTCCCTCT
CTCCTCCCCATCTTTCTCCTTCTCCCCCTCCGTTCCCAAAGAGAAACCCG
TCCTCCACCTTATTTACCCTCTATTACTTGCTCAATTCGGAATCAGTGCC
TGGGCCTATGGCGTCATTCCTGCCCTCACCCCAATCTCGACAGGGGGGTA
TCAACATAGTGGGAAGATATTACAATTTTCATCCTTTGTCTCCATGGCAC
TCGATCCACTCTCGCGGGCTTTGACTCACTATTGTCGATGTTATCGTCTT
GTTTTGCTGTTTGGAATTGTGAATTTGCTGGCGATACTCTTGGCGGTGGC
GGCAGGGATGGCCCCCCGACCTCCCTTTTGGGAGTGGGAGGGAGGAGGGG
TGTTTGTGGTTGTTGTGAATGGAGGGTTCACGGCGGCATTTGCGTTCTGT
TCAACGATGTTTTACTTTAGCATTCGTTTGGCGCTGCAATTGCGGAGTGA
GCAAGAGGAGGAGAACGGAAAGGAAGGGAGAGAGAGTGGGGCGGGAGGGG
GAGTGATGGGGGTGCAGGCGGCGGCTGCGTTTGAGACGTGTGCTATGAAG
GAGGGAGAGGAGACGGAGGAAGGGGAGCAAGGAAACGAAGTTGGTAGTGA
CAGAGTAGATTTTGGTGTGCCCGCATCGACGGAGGAGGGGGGAAGGGATG
AAGGAAGAGAAGACGAGGAGAAGCAGCAGTTGGAGCGAGGGCAGCTGTTG
AGATGGCAGGAGGGATTCAGGTGGTCGAGTTTTGTGATCCAGATAGGGGC
ATTCGTGGGTGCCTTGCTGACATTTCTGCTTGTCAGGTAGAGTTCTTAAG
CCCTCCTCCTTACGGTTTTGAGTGAAAGCGGGTTAAGCAGAAGGGGTGGA
AAAATTACAAAATAAAACGCTCTGTACACTAATTATAGAAACCTCATTTT
TGG back to topCoding sequence (CDS) from alignment at chr8:590824..592676- >NO08G01950.1 ID=NO08G01950.1|Name=NO08G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr8:590824..592676- (Nannochloropsis oceanica) ATGGCAAGCGTCATTCGCCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCC GCCTGCCCCTCCACCATGGGCACTTCATGCTGCCTTCACGGCCCTGGGTC TGTCGTCCTTTATGCTGTCAAATGCACTATGGGCGGAGATGGCAGCCTTT GTTGCTGCGTTGCCGGAAGCCGATAAGCTAGGAAGCTATTTGCTATTGTC GCTCCAGGTTGCCAATGTCGTCCCAGCTGCAGTCATGCTCCGCGGCCCCG AAGCAATGCACCTCGAATCCGTCATTTGGATCCTCCTCCTCGGCGGCATC CTCACAAGTCAGCTCATGAGCTTCTGTTGGTCCTCTACCACAGACATGAG CAACGGCAACATGGAAGACAGCAACAGTTCCCATTCAATCGCCTTGATCA TTTTGACTTTCTTTGCAGGCTCGATTAATAACTCCTCCTCACTCTACCTC TACCCCTTCGTCGCGCAATGGGAAAGTCGCTACATCTCCGCCCTAGCCAC AGGAGAGGGCTTATCAGGCATATTGGTATCTTTATTGGCGCTCGCTCAAA ATGTAGGGGGGAGGCATCCGAGGTTTTCGGTAACTGCATTTTTCCAGGGC GTCAGTGCCTTTTACCTCTTTTCGGTGCTTGGCTTCTCGTACCTCTTAAG GGAGCAGAAACGACAGGAAGCACGCAAGATGACCTCAACAGCAACAGCGC CGAGAGCAGCAGCAACAGTAGCAGAGGAAACAAGACACGCATCCGACGTA TCAGCTTATAAACGCCTCCTCCTCCTCCACCAAAGCACCACCCACGAGGA AAACGAAGAGAGCACCCTCGTCCTCCCTCTCTCCTCCCCATCTTTCTCCT TCTCCCCCTCCGTTCCCAAAGAGAAACCCGTCCTCCACCTTATTTACCCT CTATTACTTGCTCAATTCGGAATCAGTGCCTGGGCCTATGGCGTCATTCC TGCCCTCACCCCAATCTCGACAGGGGGGTATCAACATAGTGGGAAGATAT TACAATTTTCATCCTTTGTCTCCATGGCACTCGATCCACTCTCGCGGGCT TTGACTCACTATTGTCGATGTTATCGTCTTGTTTTGCTGTTTGGAATTGT GAATTTGCTGGCGATACTCTTGGCGGTGGCGGCAGGGATGGCCCCCCGAC CTCCCTTTTGGGAGTGGGAGGGAGGAGGGGTGTTTGTGGTTGTTGTGAAT GGAGGGTTCACGGCGGCATTTGCGTTCTGTTCAACGATGTTTTACTTTAG CATTCGTTTGGCGCTGCAATTGCGGAGTGAGCAAGAGGAGGAGAACGGAA AGGAAGGGAGAGAGAGTGGGGCGGGAGGGGGAGTGATGGGGGTGCAGGCG GCGGCTGCGTTTGAGACGTGTGCTATGAAGGAGGGAGAGGAGACGGAGGA AGGGGAGCAAGGAAACGAAGTTGGTAGTGACAGAGTAGATTTTGGTGTGC CCGCATCGACGGAGGAGGGGGGAAGGGATGAAGGAAGAGAAGACGAGGAG AAGCAGCAGTTGGAGCGAGGGCAGCTGTTGAGATGGCAGGAGGGATTCAG GTGGTCGAGTTTTGTGATCCAGATAGGGGCATTCGTGGGTGCCTTGCTGA CATTTCTGCTTGTCAGGTAG back to top
|