NO08G01950.1, NO08G01950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01950.1
Unique NameNO08G01950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1733
Alignment locationchr8:590824..592676 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:590824..592676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G01950.1 vs.
Match: EWM26594.1 (riboflavin transporter 2 [Nannochloropsis gaditana])

HSP 1 Score: 496.1 bits (1276), Expect = 1.400e-136
Identity = 297/526 (56.46%), Postives = 355/526 (67.49%), Query Frame = 0
Query:   13 PPKLPPAPPPWALHAAFTALGLSSFMLSNALWAEMAAFVAALPEADKLGSYLLLSLQVANVVPAAVMLRGPEAMHLESVIWILLLGGILTSQLMSFCWSSTTDMSNGNMEDSNSSHSIALIILTFFAGSINNSSSLYLYPFVAQWESRYISALATGEGLSGILVSLLALAQNVGGRHPRFSVTAFFQGVSAFYLFSVLGFSYLLREQKRQEARKMTSTATAPRAAATVAEETRHASDVSAYKRLLLLHQSTTHEENEESTLVLPLSSPSFSFSPSVPKEKPVLHLIYPLLLAQFGISAWAYGVIPALTPISTGGYQHSGKILQFSSFVSMALDPLSRALTHYCRCYRLVLLFGIVNLLAILLAVAAGMAPRPPFWEWEGGGVFVVVVNGGFTAAFAFCSTMFYFSIRLALQLRSEQEEENGKEGRESGAGGGVMGVQAAAAFETCAMKEGEETEEGEQGNEVGSDRVDFGVPASTEEGGRDEGREDEEKQQLERGQLLRWQEGFRWSSFVIQIGAFVGALLTFLLV 539
            P K PP  PPWAL AAFTALGLSSFMLSNALWAEM A V+ALPE +KLGSYLLLSLQ ANVVP   MLRGPE +HLES+IW LLLGG++ SQLMSFCW++TT +          SH+++LI+LTF AG INNSSSL+LYPFVA+WE RY+SALATGEGLSGILVSL+ L QNVGG  PRFSV A+FQGVSA Y+FS+LGF +LL+E++ ++AR   S          VAEE   A    A KR+LL     + ++ +   LV+PLS+P+ +         PVL LI+P LLAQFGIS WAYGVIPALTPIST GYQH+  +LQ+SS VSMALDPLSRALTH  RCYRL LL  +VN+LA +L VAA ++PRPPF +   GG+FVV  NG FTAAFAF STM +F I  AL  R           R +G      G+Q     + CA+  G+    G          V  G      E   + G   EE    E  Q+LR Q+GFRWS F++Q+GAFVGAL TFLLV
Sbjct:    6 PLKAPPPAPPWALQAAFTALGLSSFMLSNALWAEMPALVSALPEGNKLGSYLLLSLQAANVVPVIAMLRGPEVVHLESIIWALLLGGVVASQLMSFCWAATTPIPGAG----GKSHALSLILLTFLAGCINNSSSLFLYPFVARWERRYVSALATGEGLSGILVSLIGLTQNVGGARPRFSVRAYFQGVSALYVFSLLGFLFLLQEERHKKARVALSMDRV------VAEERETAWQGGAKKRVLL-----SVKDEDSDALVVPLSAPTLA-------PAPVLALIWPFLLAQFGISLWAYGVIPALTPISTSGYQHAAHVLQYSSIVSMALDPLSRALTHRLRCYRLPLLVVLVNVLATVLCVAAAISPRPPFVDQPLGGLFVVFFNGAFTAAFAFTSTMVFFCIHRALGPRHGLPLP--VHARRAGGADEAPGLQE----DACALMVGQRRGGGRP--------VSIGRGEGEGEHAGEVGPGGEE----EFVQVLRRQDGFRWSGFIVQVGAFVGALATFLLV 491          
The following BLAST results are available for this feature:
BLAST of NO08G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26594.11.400e-13656.46riboflavin transporter 2 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01950NO08G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01950.1NO08G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01950.1.cds1NO08G01950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01950.1.cds2NO08G01950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01950.1 ID=NO08G01950.1|Name=NO08G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp
ATGGCAAGCGTCATTCGCCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCC
GCCTGCCCCTCCACCATGGGCACTTCATGCTGCCTTCACGGCCCTGGGTC
TGTCGTCCTTTATGCTGTCAAATGCACTATGGGCGGAGATGGCAGCCTTT
GTTGCTGCGTTGCCGGAAGCCGATAAGCTAGGAAGCTATTTGCTATTGTC
GCTCCAGGTTGCCAATGTCGTCCCAGCTGCAGTCATGCTCCGCGGCCCCG
AAGCAATGCACCTCGAATCCGTCATTTGGATCCTCCTCCTCGGCGGCATC
CTCACAAGTCAGCTCATGAGCTTCTGTTGGTCCTCTACCACAGACATGAG
CAACGGCAACATGGAAGACAGCAACAGTTCCCATTCAATCGCCTTGATCA
TTTTGACTTTCTTTGCAGGCTCGATTAATAACTCCTCCTCACTCTACCTC
TACCCCTTCGTCGCGCAATGGGAAAGTCGCTACATCTCCGCCCTAGCCAC
AGGAGAGGGCTTATCAGGCATATTGGTATCTTTATTGGCGCTCGCTCAAA
ATGTAGGGGGGAGGCATCCGAGGTTTTCGGTAACTGCATTTTTCCAGGGC
GTCAGTGCCTTTTACCTCTTTTCGGTGCTTGGCTTCTCGTACCTCTTAAG
GGAGCAGAAACGACAGGAAGCACGCAAGATGACCTCAACAGCAACAGCGC
CGAGAGCAGCAGCAACAGTAGCAGAGGAAACAAGACACGCATCCGACGTA
TCAGCTTATAAACGCCTCCTCCTCCTCCACCAAAGCACCACCCACGAGGA
AAACGAAGAGAGCACCCTCGTCCTCCCTCTCTCCTCCCCATCTTTCTCCT
TCTCCCCCTCCGTTCCCAAAGAGAAACCCGTCCTCCACCTTATTTACCCT
CTATTACTTGCTCAATTCGGAATCAGTGCCTGGGCCTATGGCGTCATTCC
TGCCCTCACCCCAATCTCGACAGGGGGGTATCAACATAGTGGGAAGATAT
TACAATTTTCATCCTTTGTCTCCATGGCACTCGATCCACTCTCGCGGGCT
TTGACTCACTATTGTCGATGTTATCGTCTTGTTTTGCTGTTTGGAATTGT
GAATTTGCTGGCGATACTCTTGGCGGTGGCGGCAGGGATGGCCCCCCGAC
CTCCCTTTTGGGAGTGGGAGGGAGGAGGGGTGTTTGTGGTTGTTGTGAAT
GGAGGGTTCACGGCGGCATTTGCGTTCTGTTCAACGATGTTTTACTTTAG
CATTCGTTTGGCGCTGCAATTGCGGAGTGAGCAAGAGGAGGAGAACGGAA
AGGAAGGGAGAGAGAGTGGGGCGGGAGGGGGAGTGATGGGGGTGCAGGCG
GCGGCTGCGTTTGAGACGTGTGCTATGAAGGAGGGAGAGGAGACGGAGGA
AGGGGAGCAAGGAAACGAAGTTGGTAGTGACAGAGTAGATTTTGGTGTGC
CCGCATCGACGGAGGAGGGGGGAAGGGATGAAGGAAGAGAAGACGAGGAG
AAGCAGCAGTTGGAGCGAGGGCAGCTGTTGAGATGGCAGGAGGGATTCAG
GTGGTCGAGTTTTGTGATCCAGATAGGGGCATTCGTGGGTGCCTTGCTGA
CATTTCTGCTTGTCAGGTAGAGTTCTTAAGCCCTCCTCCTTACGGTTTTG
AGTGAAAGCGGGTTAAGCAGAAGGGGTGGAAAAATTACAAAATAAAACGC
TCTGTACACTAATTATAGAAACCTCATTTTTGG
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protein sequence of NO08G01950.1

>NO08G01950.1-protein ID=NO08G01950.1-protein|Name=NO08G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MASVIRHSSSSFPPKLPPAPPPWALHAAFTALGLSSFMLSNALWAEMAAF
VAALPEADKLGSYLLLSLQVANVVPAAVMLRGPEAMHLESVIWILLLGGI
LTSQLMSFCWSSTTDMSNGNMEDSNSSHSIALIILTFFAGSINNSSSLYL
YPFVAQWESRYISALATGEGLSGILVSLLALAQNVGGRHPRFSVTAFFQG
VSAFYLFSVLGFSYLLREQKRQEARKMTSTATAPRAAATVAEETRHASDV
SAYKRLLLLHQSTTHEENEESTLVLPLSSPSFSFSPSVPKEKPVLHLIYP
LLLAQFGISAWAYGVIPALTPISTGGYQHSGKILQFSSFVSMALDPLSRA
LTHYCRCYRLVLLFGIVNLLAILLAVAAGMAPRPPFWEWEGGGVFVVVVN
GGFTAAFAFCSTMFYFSIRLALQLRSEQEEENGKEGRESGAGGGVMGVQA
AAAFETCAMKEGEETEEGEQGNEVGSDRVDFGVPASTEEGGRDEGREDEE
KQQLERGQLLRWQEGFRWSSFVIQIGAFVGALLTFLLVR*
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mRNA from alignment at chr8:590824..592676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01950.1 ID=NO08G01950.1|Name=NO08G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at chr8:590824..592676- (Nannochloropsis oceanica)
ATGGCAAGCGTCATTCGCCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCC GCCTGCCCCTCCACCATGGGCACTTCATGCTGCCTTCACGGCCCTGGGTC TGTCGTCCTTTATGCTGTCAAATGCACTATGGGCGGAGATGGCAGCCTTT GTTGCTGCGTTGCCGGAAGCCGATAAGCTAGGAAGCTATTTGCTATTGTC GCTCCAGGTAGGAAAGGGCTCAAGAGGAAGGGGGCTAGCATGCATGCGGT GGGACCCGAAGCAAGCCCTACTCCCAGCTCATGTCATCCCCATTCTCAAC GACACGACACCCTCGCCTCACCCGCAGGTTGCCAATGTCGTCCCAGCTGC AGTCATGCTCCGCGGCCCCGAAGCAATGCACCTCGAATCCGTCATTTGGA TCCTCCTCCTCGGCGGCATCCTCACAAGTCAGCTCATGAGCTTCTGTTGG TCCTCTACCACAGACATGAGCAACGGCAACATGGAAGACAGCAACAGTTC CCATTCAATCGCCTTGATCATTTTGACTTTCTTTGCAGGCTCGATTAATA ACTCCTCCTCACTCTACCTCTACCCCTTCGTCGCGCAATGGGAAAGTCGC TACATCTCCGCCCTAGCCACAGGAGAGGGCTTATCAGGCATATTGGTATC TTTATTGGCGCTCGCTCAAAATGTAGGGGGGAGGCATCCGAGGTTTTCGG TAACTGCATTTTTCCAGGGCGTCAGTGCCTTTTACCTCTTTTCGGTGCTT GGCTTCTCGTACCTCTTAAGGGAGCAGAAACGACAGGAAGCACGCAAGAT GACCTCAACAGCAACAGCGCCGAGAGCAGCAGCAACAGTAGCAGAGGAAA CAAGACACGCATCCGACGTATCAGCTTATAAACGCCTCCTCCTCCTCCAC CAAAGCACCACCCACGAGGAAAACGAAGAGAGCACCCTCGTCCTCCCTCT CTCCTCCCCATCTTTCTCCTTCTCCCCCTCCGTTCCCAAAGAGAAACCCG TCCTCCACCTTATTTACCCTCTATTACTTGCTCAATTCGGAATCAGTGCC TGGGCCTATGGCGTCATTCCTGCCCTCACCCCAATCTCGACAGGGGGGTA TCAACATAGTGGGAAGATATTACAATTTTCATCCTTTGTCTCCATGGCAC TCGATCCACTCTCGCGGGCTTTGACTCACTATTGTCGATGTTATCGTCTT GTTTTGCTGTTTGGAATTGTGAATTTGCTGGCGATACTCTTGGCGGTGGC GGCAGGGATGGCCCCCCGACCTCCCTTTTGGGAGTGGGAGGGAGGAGGGG TGTTTGTGGTTGTTGTGAATGGAGGGTTCACGGCGGCATTTGCGTTCTGT TCAACGATGTTTTACTTTAGCATTCGTTTGGCGCTGCAATTGCGGAGTGA GCAAGAGGAGGAGAACGGAAAGGAAGGGAGAGAGAGTGGGGCGGGAGGGG GAGTGATGGGGGTGCAGGCGGCGGCTGCGTTTGAGACGTGTGCTATGAAG GAGGGAGAGGAGACGGAGGAAGGGGAGCAAGGAAACGAAGTTGGTAGTGA CAGAGTAGATTTTGGTGTGCCCGCATCGACGGAGGAGGGGGGAAGGGATG AAGGAAGAGAAGACGAGGAGAAGCAGCAGTTGGAGCGAGGGCAGCTGTTG AGATGGCAGGAGGGATTCAGGTGGTCGAGTTTTGTGATCCAGATAGGGGC ATTCGTGGGTGCCTTGCTGACATTTCTGCTTGTCAGGTAGAGTTCTTAAG CCCTCCTCCTTACGGTTTTGAGTGAAAGCGGGTTAAGCAGAAGGGGTGGA AAAATTACAAAATAAAACGCTCTGTACACTAATTATAGAAACCTCATTTT TGG
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Coding sequence (CDS) from alignment at chr8:590824..592676-

>NO08G01950.1 ID=NO08G01950.1|Name=NO08G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr8:590824..592676- (Nannochloropsis oceanica)
ATGGCAAGCGTCATTCGCCACTCCTCTTCGTCCTTTCCCCCAAAGCTCCC
GCCTGCCCCTCCACCATGGGCACTTCATGCTGCCTTCACGGCCCTGGGTC
TGTCGTCCTTTATGCTGTCAAATGCACTATGGGCGGAGATGGCAGCCTTT
GTTGCTGCGTTGCCGGAAGCCGATAAGCTAGGAAGCTATTTGCTATTGTC
GCTCCAGGTTGCCAATGTCGTCCCAGCTGCAGTCATGCTCCGCGGCCCCG
AAGCAATGCACCTCGAATCCGTCATTTGGATCCTCCTCCTCGGCGGCATC
CTCACAAGTCAGCTCATGAGCTTCTGTTGGTCCTCTACCACAGACATGAG
CAACGGCAACATGGAAGACAGCAACAGTTCCCATTCAATCGCCTTGATCA
TTTTGACTTTCTTTGCAGGCTCGATTAATAACTCCTCCTCACTCTACCTC
TACCCCTTCGTCGCGCAATGGGAAAGTCGCTACATCTCCGCCCTAGCCAC
AGGAGAGGGCTTATCAGGCATATTGGTATCTTTATTGGCGCTCGCTCAAA
ATGTAGGGGGGAGGCATCCGAGGTTTTCGGTAACTGCATTTTTCCAGGGC
GTCAGTGCCTTTTACCTCTTTTCGGTGCTTGGCTTCTCGTACCTCTTAAG
GGAGCAGAAACGACAGGAAGCACGCAAGATGACCTCAACAGCAACAGCGC
CGAGAGCAGCAGCAACAGTAGCAGAGGAAACAAGACACGCATCCGACGTA
TCAGCTTATAAACGCCTCCTCCTCCTCCACCAAAGCACCACCCACGAGGA
AAACGAAGAGAGCACCCTCGTCCTCCCTCTCTCCTCCCCATCTTTCTCCT
TCTCCCCCTCCGTTCCCAAAGAGAAACCCGTCCTCCACCTTATTTACCCT
CTATTACTTGCTCAATTCGGAATCAGTGCCTGGGCCTATGGCGTCATTCC
TGCCCTCACCCCAATCTCGACAGGGGGGTATCAACATAGTGGGAAGATAT
TACAATTTTCATCCTTTGTCTCCATGGCACTCGATCCACTCTCGCGGGCT
TTGACTCACTATTGTCGATGTTATCGTCTTGTTTTGCTGTTTGGAATTGT
GAATTTGCTGGCGATACTCTTGGCGGTGGCGGCAGGGATGGCCCCCCGAC
CTCCCTTTTGGGAGTGGGAGGGAGGAGGGGTGTTTGTGGTTGTTGTGAAT
GGAGGGTTCACGGCGGCATTTGCGTTCTGTTCAACGATGTTTTACTTTAG
CATTCGTTTGGCGCTGCAATTGCGGAGTGAGCAAGAGGAGGAGAACGGAA
AGGAAGGGAGAGAGAGTGGGGCGGGAGGGGGAGTGATGGGGGTGCAGGCG
GCGGCTGCGTTTGAGACGTGTGCTATGAAGGAGGGAGAGGAGACGGAGGA
AGGGGAGCAAGGAAACGAAGTTGGTAGTGACAGAGTAGATTTTGGTGTGC
CCGCATCGACGGAGGAGGGGGGAAGGGATGAAGGAAGAGAAGACGAGGAG
AAGCAGCAGTTGGAGCGAGGGCAGCTGTTGAGATGGCAGGAGGGATTCAG
GTGGTCGAGTTTTGTGATCCAGATAGGGGCATTCGTGGGTGCCTTGCTGA
CATTTCTGCTTGTCAGGTAG
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Synonyms
Publications