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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:574420..577144 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01900.1 vs.
Match: EWM26708.1 (Epidermal growth factor-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 245.7 bits (626), Expect = 4.500e-61 Identity = 257/697 (36.87%), Postives = 353/697 (50.65%), Query Frame = 0
Query: 86 GKADMVEKDDEYDADMDDDNMIDGLEEGEGKDVDEDEDEGKEPTSEKNEEADKEPSDPATATALEDGREGKESDATAEGMDET-KDAADDKGEVK--EEGDEEQDDESKQGKMGLLHEATTTKGETAPVAEAEIGTDTDKTTSGT---GESKKGISDEVKEVDGNAAATTASEAVAESSKSKSGPPKLEDAEDDKDTKADAAAADASSALAEGAGETNEKDVVGEADVGPADSSSSSSSSNDKKKSVAEEEITATTATDEGKENTDNKADENKEGKAEASERKRNGEAAGP--EKKEKGVDSATVEK-----PTD-DGKVPAAPDSDYSNVPDPASAEQEKQQQKREQDQQQQEQHQQQQQQQPQQQVEVTEVKEVKEGDVAPVISESSTATGTAGTGDACDPQITCNGHGKCNEDGSCRCYPPYTGSACLRDACLDIWDCNECVGSNLGCYFSDGECRGDGLISPEESTCRPAWLASVMAYMQFAFLFGVVLLVAGGMVWRSRRASMVAGGREGGLGGFIRMPTAGGGPEGEGENWHWDPEEDSVELLKQSGEEGGREGGREGQEGGKGKGIYALIR--PSSKSSPVRSQQQEEEKMQQHQTSAGLGAGVTSRRDSGGRKELQSGEDLFAELGMEAQPQFNLKR---QNDAGPPGQQMSCTRSSRLSAAGTSPVKGGSTGGEGLAPGWMDDEDLDI 764
G+A + K++E + L+ + K D + KN E D +DP +A A G+ G+E +A AE T +A D K VK EE E+ D+E+++ E T K P + D+ SG+ G ++K DE ++ G +++T S A + + + G + A DK + + A D E A E E+++ + VG + +S++ + A E++ A K EG + + + E A P + + G D A K PT+ + +V + + +P+ E + + +E + Q P + E K +E A + CD TCNGHGKC +DGSCRC+PPYTG +CLRDACLDIWDCNECVGS+LGCYFS+GECRGDGL+S EESTCRPAWLA+ ++Y+QF FGVVL+VAG +VWRSRRA GR G GF+R+PTA GPEG GE+W+WDPEED+VELLK GE + G + K GIYAL R P+S + P +S S+ + + RR S G EL S +DLFAELGMEAQP F LK + G TRSSRLSAAG SPVK + G G PGW+DD+DLD+
Sbjct: 23 GQAHIAAKENELSPGR---RRLKALKSFDSKLSDVRNTAASQTEDRKNHETDALGTDPKSAKAAV-GQRGEEEEAEAEDNAATASEAGDTKPHVKAREEESEKGDEETEE-------EGGTAKKPAEPSLDKTKEVKEDEKPSGSEQDGSARK--DDERQKSSGPSSSTDESPAETDGASLEQGK---DSASTDKGGEEEVKAGD------EEAEEDAEEEIKRDDGVGEHAHAQGASTTKGGNEIPAGEQVEVPEAPGAEAGEKGEKEKARGEGGVPSGKGTTDAEGASPARDSSQDGKDGAPAPKAGAEPPTELESQVSEGDSQEDTQLPE--ETESSSSEGNMSGTKTGEELGEATAQVGPGK-AEKESTKSAEEASAPGKAESVGLPPVVADAVEDCDDLETCNGHGKCEKDGSCRCFPPYTGHSCLRDACLDIWDCNECVGSSLGCYFSEGECRGDGLMSREESTCRPAWLATALSYLQFGVFFGVVLMVAGCLVWRSRRAGF--DGRSG--TGFVRIPTA--GPEG-GEDWNWDPEEDNVELLKPRGEGEKDDVGAPTAQSTK-TGIYALFRSSPASAAPPRKS-------------SSAVAGEIALRRVSEGH-ELPSADDLFAELGMEAQPHFTLKMAKFEEREADSGHSSRGTRSSRLSAAGCSPVKSSTGGAPG--PGWVDDDDLDM 670
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01900.1 ID=NO08G01900.1|Name=NO08G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2725bp TCATACAACACACCGCACTTGCCCCAACTCAGGCATTGGACCAAATCCAA GTACCATGCCGATTGGATTCAAACTTCTGGCGATGCTTGTCCTCTGCACT TTTTTCTTAATCGTCAGCGGGAGGACCAACGTTTTAAGGGGCGGCAGCAG CAGGGAGCTCAGAAGGGACACCAAGACCACTCTTGCTGGCGACAAGGGCA GCGCTAACGCCAATAAAATGGAAGTGACCATCGATAAGAAGAAGAAGAAG GGCGCAGGTGCGGTGGCCGAGCCGGTGGAATCAGTCCCCACAGAAAAAGG CCCGAAGGAGGGCAAGGCTGATATGGTCGAGAAGGATGACGAGTACGATG CTGATATGGATGATGACAACATGATTGACGGGCTTGAAGAGGGGGAAGGG AAAGATGTTGATGAGGACGAAGATGAGGGGAAAGAGCCGACCTCGGAGAA AAACGAAGAAGCGGACAAAGAGCCAAGCGACCCTGCGACTGCTACGGCTT TGGAGGACGGACGAGAGGGCAAGGAGAGTGACGCAACGGCGGAAGGGATG GATGAAACCAAGGATGCTGCTGACGACAAGGGAGAGGTGAAGGAGGAAGG AGACGAGGAGCAGGATGATGAGTCCAAACAGGGCAAGATGGGCTTGCTTC ATGAAGCCACCACCACCAAGGGTGAGACAGCACCTGTCGCTGAAGCTGAA ATAGGCACCGACACAGACAAGACCACCAGCGGCACAGGCGAGAGCAAGAA GGGTATCAGCGATGAAGTGAAGGAGGTGGATGGGAATGCTGCTGCTACTA CCGCTTCTGAGGCTGTTGCTGAGAGTTCCAAATCTAAAAGTGGGCCGCCG AAGTTGGAAGACGCGGAAGATGACAAGGACACGAAAGCGGACGCCGCTGC TGCTGACGCCTCTTCTGCCCTAGCTGAGGGCGCTGGTGAGACTAATGAGA AAGATGTTGTTGGCGAGGCTGACGTTGGACCAGCAGACAGCAGCAGCAGC AGCAGCAGCAGCAACGATAAGAAGAAGAGCGTTGCCGAGGAAGAAATTAC TGCTACCACCGCGACGGACGAAGGAAAGGAAAACACCGACAATAAGGCTG ATGAAAATAAAGAAGGAAAGGCCGAGGCAAGCGAAAGAAAGAGAAATGGC GAAGCTGCAGGACCAGAGAAAAAAGAGAAGGGGGTAGACAGCGCCACAGT CGAAAAACCCACCGATGATGGCAAGGTGCCAGCCGCGCCCGACTCAGACT ATTCTAATGTCCCCGACCCTGCATCTGCAGAGCAGGAGAAGCAGCAACAG AAACGGGAGCAGGATCAGCAGCAGCAGGAGCAGCATCAGCAGCAGCAGCA GCAGCAGCCGCAACAGCAAGTGGAGGTGACGGAGGTGAAAGAGGTCAAGG AAGGGGATGTTGCTCCTGTGATATCTGAATCAAGCACCGCCACAGGCACT GCTGGTACTGGTGATGCATGCGATCCGCAGATCACGTGTAACGGGCATGG AAAGTGCAACGAGGATGGGAGCTGTCGTTGTTATCCTCCCTACACAGGGA GTGCGTGCTTGCGCGATGCATGCTTGGACATTTGGGACTGCAACGAGTGC GTTGGCTCTAACTTGGGCTGTTACTTCTCTGACGGCGAGTGTCGCGGGGA TGGATTGATAAGTCCTGAAGAAAGCACGTGCCGCCCGGCGTGGCTGGCAT CGGTGATGGCGTACATGCAATTTGCGTTTCTGTTTGGGGTGGTGTTGTTG GTGGCGGGGGGGATGGTCTGGCGGAGTCGACGCGCGAGCATGGTGGCTGG AGGGAGGGAGGGAGGGCTCGGGGGGTTTATACGGATGCCAACGGCTGGGG GAGGCCCGGAGGGAGAAGGGGAGAATTGGCATTGGGACCCTGAAGAGGAT AGTGTGGAGCTGTTGAAGCAGTCGGGGGAGGAGGGAGGGAGGGAGGGAGG GAGGGAGGGGCAGGAGGGGGGGAAGGGAAAGGGGATTTATGCGTTGATTC GTCCGTCTTCGAAAAGCTCGCCTGTAAGATCGCAGCAGCAGGAGGAAGAG AAGATGCAACAGCATCAGACGAGTGCAGGGTTGGGAGCTGGGGTGACGTC GAGGCGGGATTCAGGAGGGAGAAAGGAGCTTCAGTCTGGAGAGGATTTGT TCGCCGAACTGGGCATGGAGGCGCAGCCGCAGTTTAACTTGAAGAGGCAG AATGACGCAGGGCCGCCCGGGCAGCAAATGAGTTGCACGCGGAGCAGTCG GTTATCGGCGGCGGGGACGAGTCCGGTGAAGGGAGGGAGTACAGGAGGAG AGGGGTTGGCACCTGGCTGGATGGATGATGAGGATTTAGATATTTAGTCA TGCGTAACAGACAAGAATGTTAACACGCAAGAGCGAAAAGGAGGGAGGAC AAGACCAGCAAGGTGAGAGTTTTGCTCGAGGAGTGGTGGAGGACGAAGCA GACGGGACGAATGGCAAAGGTCAACGGAAGGAGGGGGCGAATTAAATGAA TTTGTGTAGTTAGGAAGTCCTCTGAGGAGACGCGCGAGTAAAGAAAAAGC CGGATCTACATTAATGTGCAGGAAGGAAGAAACAAAAAAGTAGAGCTCCC TGTTGTGATAATAGCAGTAGCCCCTCCCCACGACCCACATAAAGGAGCAC ATGGACGGGAACGGCCAAAAAAACGACGAGAAGAGCGTTAAAAAACCAAC TTTACTCGTCCTCTTCCAGAGAAGC back to topprotein sequence of NO08G01900.1 >NO08G01900.1-protein ID=NO08G01900.1-protein|Name=NO08G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=764bp MPIGFKLLAMLVLCTFFLIVSGRTNVLRGGSSRELRRDTKTTLAGDKGSA NANKMEVTIDKKKKKGAGAVAEPVESVPTEKGPKEGKADMVEKDDEYDAD MDDDNMIDGLEEGEGKDVDEDEDEGKEPTSEKNEEADKEPSDPATATALE DGREGKESDATAEGMDETKDAADDKGEVKEEGDEEQDDESKQGKMGLLHE ATTTKGETAPVAEAEIGTDTDKTTSGTGESKKGISDEVKEVDGNAAATTA SEAVAESSKSKSGPPKLEDAEDDKDTKADAAAADASSALAEGAGETNEKD VVGEADVGPADSSSSSSSSNDKKKSVAEEEITATTATDEGKENTDNKADE NKEGKAEASERKRNGEAAGPEKKEKGVDSATVEKPTDDGKVPAAPDSDYS NVPDPASAEQEKQQQKREQDQQQQEQHQQQQQQQPQQQVEVTEVKEVKEG DVAPVISESSTATGTAGTGDACDPQITCNGHGKCNEDGSCRCYPPYTGSA CLRDACLDIWDCNECVGSNLGCYFSDGECRGDGLISPEESTCRPAWLASV MAYMQFAFLFGVVLLVAGGMVWRSRRASMVAGGREGGLGGFIRMPTAGGG PEGEGENWHWDPEEDSVELLKQSGEEGGREGGREGQEGGKGKGIYALIRP SSKSSPVRSQQQEEEKMQQHQTSAGLGAGVTSRRDSGGRKELQSGEDLFA ELGMEAQPQFNLKRQNDAGPPGQQMSCTRSSRLSAAGTSPVKGGSTGGEG LAPGWMDDEDLDI* back to topmRNA from alignment at chr8:574420..577144- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01900.1 ID=NO08G01900.1|Name=NO08G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2725bp|location=Sequence derived from alignment at chr8:574420..577144- (Nannochloropsis oceanica) TCATACAACACACCGCACTTGCCCCAACTCAGGCATTGGACCAAATCCAA
GTACCATGCCGATTGGATTCAAACTTCTGGCGATGCTTGTCCTCTGCACT
TTTTTCTTAATCGTCAGCGGGAGGACCAACGTTTTAAGGGGCGGCAGCAG
CAGGGAGCTCAGAAGGGACACCAAGACCACTCTTGCTGGCGACAAGGGCA
GCGCTAACGCCAATAAAATGGAAGTGACCATCGATAAGAAGAAGAAGAAG
GGCGCAGGTGCGGTGGCCGAGCCGGTGGAATCAGTCCCCACAGAAAAAGG
CCCGAAGGAGGGCAAGGCTGATATGGTCGAGAAGGATGACGAGTACGATG
CTGATATGGATGATGACAACATGATTGACGGGCTTGAAGAGGGGGAAGGG
AAAGATGTTGATGAGGACGAAGATGAGGGGAAAGAGCCGACCTCGGAGAA
AAACGAAGAAGCGGACAAAGAGCCAAGCGACCCTGCGACTGCTACGGCTT
TGGAGGACGGACGAGAGGGCAAGGAGAGTGACGCAACGGCGGAAGGGATG
GATGAAACCAAGGATGCTGCTGACGACAAGGGAGAGGTGAAGGAGGAAGG
AGACGAGGAGCAGGATGATGAGTCCAAACAGGGCAAGATGGGCTTGCTTC
ATGAAGCCACCACCACCAAGGGTGAGACAGCACCTGTCGCTGAAGCTGAA
ATAGGCACCGACACAGACAAGACCACCAGCGGCACAGGCGAGAGCAAGAA
GGGTATCAGCGATGAAGTGAAGGAGGTGGATGGGAATGCTGCTGCTACTA
CCGCTTCTGAGGCTGTTGCTGAGAGTTCCAAATCTAAAAGTGGGCCGCCG
AAGTTGGAAGACGCGGAAGATGACAAGGACACGAAAGCGGACGCCGCTGC
TGCTGACGCCTCTTCTGCCCTAGCTGAGGGCGCTGGTGAGACTAATGAGA
AAGATGTTGTTGGCGAGGCTGACGTTGGACCAGCAGACAGCAGCAGCAGC
AGCAGCAGCAGCAACGATAAGAAGAAGAGCGTTGCCGAGGAAGAAATTAC
TGCTACCACCGCGACGGACGAAGGAAAGGAAAACACCGACAATAAGGCTG
ATGAAAATAAAGAAGGAAAGGCCGAGGCAAGCGAAAGAAAGAGAAATGGC
GAAGCTGCAGGACCAGAGAAAAAAGAGAAGGGGGTAGACAGCGCCACAGT
CGAAAAACCCACCGATGATGGCAAGGTGCCAGCCGCGCCCGACTCAGACT
ATTCTAATGTCCCCGACCCTGCATCTGCAGAGCAGGAGAAGCAGCAACAG
AAACGGGAGCAGGATCAGCAGCAGCAGGAGCAGCATCAGCAGCAGCAGCA
GCAGCAGCCGCAACAGCAAGTGGAGGTGACGGAGGTGAAAGAGGTCAAGG
AAGGGGATGTTGCTCCTGTGATATCTGAATCAAGCACCGCCACAGGCACT
GCTGGTACTGGTGATGCATGCGATCCGCAGATCACGTGTAACGGGCATGG
AAAGTGCAACGAGGATGGGAGCTGTCGTTGTTATCCTCCCTACACAGGGA
GTGCGTGCTTGCGCGATGCATGCTTGGACATTTGGGACTGCAACGAGTGC
GTTGGCTCTAACTTGGGCTGTTACTTCTCTGACGGCGAGTGTCGCGGGGA
TGGATTGATAAGTCCTGAAGAAAGCACGTGCCGCCCGGCGTGGCTGGCAT
CGGTGATGGCGTACATGCAATTTGCGTTTCTGTTTGGGGTGGTGTTGTTG
GTGGCGGGGGGGATGGTCTGGCGGAGTCGACGCGCGAGCATGGTGGCTGG
AGGGAGGGAGGGAGGGCTCGGGGGGTTTATACGGATGCCAACGGCTGGGG
GAGGCCCGGAGGGAGAAGGGGAGAATTGGCATTGGGACCCTGAAGAGGAT
AGTGTGGAGCTGTTGAAGCAGTCGGGGGAGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGGCAGGAGGGGGGGAAGGGAAAGGGGATTTATGCGTTGATTC
GTCCGTCTTCGAAAAGCTCGCCTGTAAGATCGCAGCAGCAGGAGGAAGAG
AAGATGCAACAGCATCAGACGAGTGCAGGGTTGGGAGCTGGGGTGACGTC
GAGGCGGGATTCAGGAGGGAGAAAGGAGCTTCAGTCTGGAGAGGATTTGT
TCGCCGAACTGGGCATGGAGGCGCAGCCGCAGTTTAACTTGAAGAGGCAG
AATGACGCAGGGCCGCCCGGGCAGCAAATGAGTTGCACGCGGAGCAGTCG
GTTATCGGCGGCGGGGACGAGTCCGGTGAAGGGAGGGAGTACAGGAGGAG
AGGGGTTGGCACCTGGCTGGATGGATGATGAGGATTTAGATATTTAGTCA
TGCGTAACAGACAAGAATGTTAACACGCAAGAGCGAAAAGGAGGGAGGAC
AAGACCAGCAAGGTGAGAGTTTTGCTCGAGGAGTGGTGGAGGACGAAGCA
GACGGGACGAATGGCAAAGGTCAACGGAAGGAGGGGGCGAATTAAATGAA
TTTGTGTAGTTAGGAAGTCCTCTGAGGAGACGCGCGAGTAAAGAAAAAGC
CGGATCTACATTAATGTGCAGGAAGGAAGAAACAAAAAAGTAGAGCTCCC
TGTTGTGATAATAGCAGTAGCCCCTCCCCACGACCCACATAAAGGAGCAC
ATGGACGGGAACGGCCAAAAAAACGACGAGAAGAGCGTTAAAAAACCAAC
TTTACTCGTCCTCTTCCAGAGAAGC back to topCoding sequence (CDS) from alignment at chr8:574420..577144- >NO08G01900.1 ID=NO08G01900.1|Name=NO08G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at chr8:574420..577144- (Nannochloropsis oceanica) ATGCCGATTGGATTCAAACTTCTGGCGATGCTTGTCCTCTGCACTTTTTT CTTAATCGTCAGCGGGAGGACCAACGTTTTAAGGGGCGGCAGCAGCAGGG AGCTCAGAAGGGACACCAAGACCACTCTTGCTGGCGACAAGGGCAGCGCT AACGCCAATAAAATGGAAGTGACCATCGATAAGAAGAAGAAGAAGGGCGC AGGTGCGGTGGCCGAGCCGGTGGAATCAGTCCCCACAGAAAAAGGCCCGA AGGAGGGCAAGGCTGATATGGTCGAGAAGGATGACGAGTACGATGCTGAT ATGGATGATGACAACATGATTGACGGGCTTGAAGAGGGGGAAGGGAAAGA TGTTGATGAGGACGAAGATGAGGGGAAAGAGCCGACCTCGGAGAAAAACG AAGAAGCGGACAAAGAGCCAAGCGACCCTGCGACTGCTACGGCTTTGGAG GACGGACGAGAGGGCAAGGAGAGTGACGCAACGGCGGAAGGGATGGATGA AACCAAGGATGCTGCTGACGACAAGGGAGAGGTGAAGGAGGAAGGAGACG AGGAGCAGGATGATGAGTCCAAACAGGGCAAGATGGGCTTGCTTCATGAA GCCACCACCACCAAGGGTGAGACAGCACCTGTCGCTGAAGCTGAAATAGG CACCGACACAGACAAGACCACCAGCGGCACAGGCGAGAGCAAGAAGGGTA TCAGCGATGAAGTGAAGGAGGTGGATGGGAATGCTGCTGCTACTACCGCT TCTGAGGCTGTTGCTGAGAGTTCCAAATCTAAAAGTGGGCCGCCGAAGTT GGAAGACGCGGAAGATGACAAGGACACGAAAGCGGACGCCGCTGCTGCTG ACGCCTCTTCTGCCCTAGCTGAGGGCGCTGGTGAGACTAATGAGAAAGAT GTTGTTGGCGAGGCTGACGTTGGACCAGCAGACAGCAGCAGCAGCAGCAG CAGCAGCAACGATAAGAAGAAGAGCGTTGCCGAGGAAGAAATTACTGCTA CCACCGCGACGGACGAAGGAAAGGAAAACACCGACAATAAGGCTGATGAA AATAAAGAAGGAAAGGCCGAGGCAAGCGAAAGAAAGAGAAATGGCGAAGC TGCAGGACCAGAGAAAAAAGAGAAGGGGGTAGACAGCGCCACAGTCGAAA AACCCACCGATGATGGCAAGGTGCCAGCCGCGCCCGACTCAGACTATTCT AATGTCCCCGACCCTGCATCTGCAGAGCAGGAGAAGCAGCAACAGAAACG GGAGCAGGATCAGCAGCAGCAGGAGCAGCATCAGCAGCAGCAGCAGCAGC AGCCGCAACAGCAAGTGGAGGTGACGGAGGTGAAAGAGGTCAAGGAAGGG GATGTTGCTCCTGTGATATCTGAATCAAGCACCGCCACAGGCACTGCTGG TACTGGTGATGCATGCGATCCGCAGATCACGTGTAACGGGCATGGAAAGT GCAACGAGGATGGGAGCTGTCGTTGTTATCCTCCCTACACAGGGAGTGCG TGCTTGCGCGATGCATGCTTGGACATTTGGGACTGCAACGAGTGCGTTGG CTCTAACTTGGGCTGTTACTTCTCTGACGGCGAGTGTCGCGGGGATGGAT TGATAAGTCCTGAAGAAAGCACGTGCCGCCCGGCGTGGCTGGCATCGGTG ATGGCGTACATGCAATTTGCGTTTCTGTTTGGGGTGGTGTTGTTGGTGGC GGGGGGGATGGTCTGGCGGAGTCGACGCGCGAGCATGGTGGCTGGAGGGA GGGAGGGAGGGCTCGGGGGGTTTATACGGATGCCAACGGCTGGGGGAGGC CCGGAGGGAGAAGGGGAGAATTGGCATTGGGACCCTGAAGAGGATAGTGT GGAGCTGTTGAAGCAGTCGGGGGAGGAGGGAGGGAGGGAGGGAGGGAGGG AGGGGCAGGAGGGGGGGAAGGGAAAGGGGATTTATGCGTTGATTCGTCCG TCTTCGAAAAGCTCGCCTGTAAGATCGCAGCAGCAGGAGGAAGAGAAGAT GCAACAGCATCAGACGAGTGCAGGGTTGGGAGCTGGGGTGACGTCGAGGC GGGATTCAGGAGGGAGAAAGGAGCTTCAGTCTGGAGAGGATTTGTTCGCC GAACTGGGCATGGAGGCGCAGCCGCAGTTTAACTTGAAGAGGCAGAATGA CGCAGGGCCGCCCGGGCAGCAAATGAGTTGCACGCGGAGCAGTCGGTTAT CGGCGGCGGGGACGAGTCCGGTGAAGGGAGGGAGTACAGGAGGAGAGGGG TTGGCACCTGGCTGGATGGATGATGAGGATTTAGATATTTAG back to top
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