NO08G01870.1, NO08G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01870.1
Unique NameNO08G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length973
Alignment locationchr8:570137..571109 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:570137..571109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G01870.1 vs.
Match: EWM26625.1 (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 253.8 bits (647), Expect = 5.700e-64
Identity = 139/246 (56.50%), Postives = 171/246 (69.51%), Query Frame = 0
Query:    7 VSVLP---ALFLLVVLSVLAPGATGFLLPVPDYSVLSSYTAVGTAKSHGRGASIYAAGDSHAFFLNTPPRPQKQEEMDPDFMDAAMDQAMHTVAMDWEGETSAPVKLQTSTAAATSSLPTNPFAAYEEFIEAPSTHSVYYRGHHEASFWRQGRDIIQLVVPVEPALSKSDVRFELSTKTRLRLILGETNVIFDRELSQPVYRESSFWYFEKNPEEGQKAIVIELDKRLGFSNWPKLFPEDADLSQV 250
            VS+LP    +  LV+L +L     GFLLPV     L S       +   R   + AA DS      +P + Q +E    + +DAAMDQ+MHTVAMDWE    AP+KLQTS     SSL  NPFAAYEEFIE P TH VYYRGHHE SFWRQGRD++QLVVPV+PA++K+D+ FEL+TKT LRL LG+   +FDREL+QPV+++ SFWYFE++PE  QKA+VIELDKRL +SNWPKLF  D DLS+V
Sbjct:    3 VSILPFTSKVSCLVILVLLLSLVDGFLLPVQISFDLRSSVPEHRRRPAYREIGL-AAVDSQPPSAPSPAQTQAEESDVDEIIDAAMDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEV 247          
The following BLAST results are available for this feature:
BLAST of NO08G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26625.15.700e-6456.50CS-like domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01870NO08G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01870.1NO08G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01870.1.cds1NO08G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01870.1 ID=NO08G01870.1|Name=NO08G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=973bp
TACACATCGCATTCACTCACGTTTCCCATCTCCGACCCCTGCCTCCCCTT
CAGATTTCTCCAGTGCCTCCTCCAACTTTCCAGTATCATCATGATCATCA
TGCGGGAGGTCTCTGTCCTGCCTGCATTGTTCCTCCTCGTCGTCCTCAGC
GTCCTGGCACCCGGAGCCACAGGCTTCCTGCTGCCTGTGCCAGACTACTC
AGTGCTATCCTCATATACAGCAGTAGGAACAGCCAAGAGTCATGGACGGG
GCGCATCTATATACGCCGCCGGGGATAGCCATGCCTTTTTTCTCAATACG
CCCCCACGACCGCAAAAACAAGAGGAAATGGACCCCGACTTCATGGATGC
GGCCATGGATCAAGCCATGCACACCGTCGCAATGGATTGGGAGGGCGAAA
CATCTGCACCCGTTAAGCTCCAGACGTCGACGGCGGCAGCGACATCCTCC
TTGCCCACCAACCCATTTGCGGCTTATGAAGAATTCATCGAGGCACCTTC
TACGCACTCGGTCTACTACCGAGGGCATCACGAAGCATCCTTCTGGCGAC
AAGGCCGTGATATAATTCAATTAGTCGTGCCCGTAGAACCGGCTTTGTCC
AAATCAGACGTGAGGTTCGAATTGAGCACCAAGACACGCCTGCGTTTGAT
CCTGGGCGAGACAAATGTGATTTTCGATAGGGAACTCTCTCAGCCTGTCT
ATAGAGAAAGCTCGTTCTGGTACTTTGAAAAGAATCCCGAGGAGGGTCAA
AAGGCTATTGTGATTGAGTTGGATAAACGGCTGGGGTTCTCGAACTGGCC
GAAGCTTTTCCCTGAGGATGCAGATTTGAGTCAGGTAGCTCAGGATGAGC
CGACCGCGGCGGGGCAAAGTTCAGTAGTTGTCTAGAGGCGTGTAGAGACG
GAATTAAATGATTTGGAGACAAACAAATATTGAAAATCAAGAAGAAGGAA
AAACTGCTTACGAGGAGGTGATA
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protein sequence of NO08G01870.1

>NO08G01870.1-protein ID=NO08G01870.1-protein|Name=NO08G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MIIMREVSVLPALFLLVVLSVLAPGATGFLLPVPDYSVLSSYTAVGTAKS
HGRGASIYAAGDSHAFFLNTPPRPQKQEEMDPDFMDAAMDQAMHTVAMDW
EGETSAPVKLQTSTAAATSSLPTNPFAAYEEFIEAPSTHSVYYRGHHEAS
FWRQGRDIIQLVVPVEPALSKSDVRFELSTKTRLRLILGETNVIFDRELS
QPVYRESSFWYFEKNPEEGQKAIVIELDKRLGFSNWPKLFPEDADLSQVA
QDEPTAAGQSSVVV*
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mRNA from alignment at chr8:570137..571109+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01870.1 ID=NO08G01870.1|Name=NO08G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=973bp|location=Sequence derived from alignment at chr8:570137..571109+ (Nannochloropsis oceanica)
TACACATCGCATTCACTCACGTTTCCCATCTCCGACCCCTGCCTCCCCTT CAGATTTCTCCAGTGCCTCCTCCAACTTTCCAGTATCATCATGATCATCA TGCGGGAGGTCTCTGTCCTGCCTGCATTGTTCCTCCTCGTCGTCCTCAGC GTCCTGGCACCCGGAGCCACAGGCTTCCTGCTGCCTGTGCCAGACTACTC AGTGCTATCCTCATATACAGCAGTAGGAACAGCCAAGAGTCATGGACGGG GCGCATCTATATACGCCGCCGGGGATAGCCATGCCTTTTTTCTCAATACG CCCCCACGACCGCAAAAACAAGAGGAAATGGACCCCGACTTCATGGATGC GGCCATGGATCAAGCCATGCACACCGTCGCAATGGATTGGGAGGGCGAAA CATCTGCACCCGTTAAGCTCCAGACGTCGACGGCGGCAGCGACATCCTCC TTGCCCACCAACCCATTTGCGGCTTATGAAGAATTCATCGAGGCACCTTC TACGCACTCGGTCTACTACCGAGGGCATCACGAAGCATCCTTCTGGCGAC AAGGCCGTGATATAATTCAATTAGTCGTGCCCGTAGAACCGGCTTTGTCC AAATCAGACGTGAGGTTCGAATTGAGCACCAAGACACGCCTGCGTTTGAT CCTGGGCGAGACAAATGTGATTTTCGATAGGGAACTCTCTCAGCCTGTCT ATAGAGAAAGCTCGTTCTGGTACTTTGAAAAGAATCCCGAGGAGGGTCAA AAGGCTATTGTGATTGAGTTGGATAAACGGCTGGGGTTCTCGAACTGGCC GAAGCTTTTCCCTGAGGATGCAGATTTGAGTCAGGTAGCTCAGGATGAGC CGACCGCGGCGGGGCAAAGTTCAGTAGTTGTCTAGAGGCGTGTAGAGACG GAATTAAATGATTTGGAGACAAACAAATATTGAAAATCAAGAAGAAGGAA AAACTGCTTACGAGGAGGTGATA
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Coding sequence (CDS) from alignment at chr8:570137..571109+

>NO08G01870.1 ID=NO08G01870.1|Name=NO08G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr8:570137..571109+ (Nannochloropsis oceanica)
ATGATCATCATGCGGGAGGTCTCTGTCCTGCCTGCATTGTTCCTCCTCGT
CGTCCTCAGCGTCCTGGCACCCGGAGCCACAGGCTTCCTGCTGCCTGTGC
CAGACTACTCAGTGCTATCCTCATATACAGCAGTAGGAACAGCCAAGAGT
CATGGACGGGGCGCATCTATATACGCCGCCGGGGATAGCCATGCCTTTTT
TCTCAATACGCCCCCACGACCGCAAAAACAAGAGGAAATGGACCCCGACT
TCATGGATGCGGCCATGGATCAAGCCATGCACACCGTCGCAATGGATTGG
GAGGGCGAAACATCTGCACCCGTTAAGCTCCAGACGTCGACGGCGGCAGC
GACATCCTCCTTGCCCACCAACCCATTTGCGGCTTATGAAGAATTCATCG
AGGCACCTTCTACGCACTCGGTCTACTACCGAGGGCATCACGAAGCATCC
TTCTGGCGACAAGGCCGTGATATAATTCAATTAGTCGTGCCCGTAGAACC
GGCTTTGTCCAAATCAGACGTGAGGTTCGAATTGAGCACCAAGACACGCC
TGCGTTTGATCCTGGGCGAGACAAATGTGATTTTCGATAGGGAACTCTCT
CAGCCTGTCTATAGAGAAAGCTCGTTCTGGTACTTTGAAAAGAATCCCGA
GGAGGGTCAAAAGGCTATTGTGATTGAGTTGGATAAACGGCTGGGGTTCT
CGAACTGGCCGAAGCTTTTCCCTGAGGATGCAGATTTGAGTCAGGTAGCT
CAGGATGAGCCGACCGCGGCGGGGCAAAGTTCAGTAGTTGTCTAG
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Synonyms
Publications