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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:568311..569988 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01860.2 vs.
Match: XP_005854451.1 (pci domain-containing protein 2, partial [Nannochloropsis gaditana CCMP526]; EKU21917.1 pci domain-containing protein 2, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 468.0 bits (1203), Expect = 2.100e-128 Identity = 232/272 (85.29%), Postives = 248/272 (91.18%), Query Frame = 0
Query: 1 MVYQQVPAYLTAVAEASQQADGIALTHLFSYPCLSHRLGHQFARLDVRQAIHNHATLKRVAHVPQLLEPFLRGAGCLADGELEAAFEHHRGAFAMACGMYKEQQEEWLLNLMRKLARGLRLLAQKVDKETVRLDPIMNEAVKAISDKFRVFGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTDEDFTSGEFAQADAVTYHFLRARLFLLDTNYKEAERFLAYAFKHCPVAAKRNKRTILSYMVPVKLNLGLLPRVRR 273
M++++V AYL AV EAS+Q DG ALTHLFSY CLSH LGHQFAR+DVRQAI N+A +KRVAHVP+LLEPFLR AGCLAD E+E AFEHHR AF +A +YK+ QEEWLLNLMRKLARGLRLLAQKVDKE VR DPIMNEAVKAISDKFR+FGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTD+DFTSGEFAQADAVTYHFLRARLFLLDTNYKEAERFL YAF+HCP AA RNKRTILSYMVPVKLNLGLLPR R
Sbjct: 1 MLFRKVTAYLDAVTEASRQEDGTALTHLFSYDCLSHGLGHQFARMDVRQAIRNNAAVKRVAHVPELLEPFLRAAGCLADQEVEKAFEHHRSAFVLAGDLYKDLQEEWLLNLMRKLARGLRLLAQKVDKEKVRFDPIMNEAVKAISDKFRLFGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTDDDFTSGEFAQADAVTYHFLRARLFLLDTNYKEAERFLTYAFRHCPAAAHRNKRTILSYMVPVKLNLGLLPRPPR 272
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01860.2 ID=NO08G01860.2|Name=NO08G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp CAACCACCACTCTCACACCTCACCGCGCACCAAACCAAGGCACAGGGAAA AAAATGGTATATCAGCAGGTCCCCGCATACCTGACAGCCGTGGCCGAAGC TTCCCAACAAGCCGATGGCATTGCCTTAACGCACCTCTTCTCCTATCCCT GTCTCTCCCATCGCCTAGGGCACCAGTTTGCCCGCCTGGACGTCCGACAA GCCATCCACAACCACGCAACACTCAAACGGGTCGCTCATGTACCACAACT TCTCGAGCCGTTCTTACGGGGGGCGGGCTGCTTGGCAGACGGCGAACTCG AGGCAGCCTTCGAGCATCATCGGGGCGCGTTCGCCATGGCTTGTGGGATG TACAAGGAGCAGCAAGAAGAGTGGTTGCTCAACCTTATGCGGAAGCTGGC GCGAGGGCTGCGGCTATTGGCACAAAAGGTGGATAAGGAAACAGTGCGGC TGGACCCCATAATGAACGAGGCCGTCAAGGCCATCTCAGACAAGTTCCGT GTTTTTGGCACGGTCACAGCTAGTGGACGTCGACGGGTAGCCCTGATGCT TGCGAACGAGCAGATTATTTGCTACCTCCAATTAAACAACCCACGGCAAT GCAAGCCATTGACTGATTGGGCCGATGCCCGACATAAGCTGACGGACGAG GATTTCACCTCGGGAGAGTTTGCACAGGCGGATGCTGTGACATATCATTT CTTGCGGGCCCGTCTCTTTTTGCTCGACACGAATTATAAGGAGGCGGAGA GGTTTTTGGCATATGCCTTCAAGCATTGTCCTGTGGCAGCGAAGAGGAAT AAGCGGACGATTTTGTCGTACATGGTGCCAGTAAAACTTAATTTGGGGTT GCTACCGCGGGTACGACGGAGGGTGGAGGGAATGCGGGGTAGAGGGAGGG AGAGAGGGAGGACTGGGAGAGGTGGTTGAGCTTTCATTTTTGTCCGTCAA GATAAGTGCGGGATTTCTCTTCTCCTTGTCCTCTAAATCACCTTTCTCCC CCAACAATTTCTCGAAGCGCGGCCTCCTGGAGCGTTTCCAGCTCAAGGAG TTCGAGTCGTTGGTGGCTGCCCTGCGGGACGGGGACTTCCGCCTGTATCA GCAAGAGCTAGATCGATACCAAGACGAGTTTATCGCACGCGGCGTTTACA TCATTTTAGAGAAGCTCAAGTTGTTCGTGTATCGGAACTTCTTCAAGAAG ATCTGGGTGCTTAAAGGCAAGGAGTCAAGGCTCTCGATCGACCTCGTCTT TCAGCTGCACCAAGCGATAGATCCCGCTGCGGACGTGGACATTGACGAAA TTGAGTGTTTGCTCGCCAACTTGATCTTCAAAGGGAATATTCGAGGGTAT ATTGCTCACGAAAAGCGCATTTTGGTGCTGTCGAAGGACAATCCTTTCCC GTATCCGCAACAAAAGTAGGGAAAAGGAAGGAGGGTGCAAGGTGGGCATG TATAGCTAACAAAGATATAAAAGCGCGAGGGAAAATAGGCAATGGTTGA back to topprotein sequence of NO08G01860.2 >NO08G01860.2-protein ID=NO08G01860.2-protein|Name=NO08G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp MVYQQVPAYLTAVAEASQQADGIALTHLFSYPCLSHRLGHQFARLDVRQA IHNHATLKRVAHVPQLLEPFLRGAGCLADGELEAAFEHHRGAFAMACGMY KEQQEEWLLNLMRKLARGLRLLAQKVDKETVRLDPIMNEAVKAISDKFRV FGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTDED FTSGEFAQADAVTYHFLRARLFLLDTNYKEAERFLAYAFKHCPVAAKRNK RTILSYMVPVKLNLGLLPRVRRRVEGMRGRGRERGRTGRGG* back to topmRNA from alignment at chr8:568311..569988- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01860.2 ID=NO08G01860.2|Name=NO08G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp|location=Sequence derived from alignment at chr8:568311..569988- (Nannochloropsis oceanica) CAACCACCACTCTCACACCTCACCGCGCACCAAACCAAGGCACAGGGAAA
AAAATGGTATATCAGCAGGTCCCCGCATACCTGACAGCCGTGGCCGAAGC
TTCCCAACAAGCCGATGGCATTGCCTTAACGCACCTCTTCTCCTATCCCT
GTCTCTCCCATCGCCTAGGGCACCAGTTTGCCCGCCTGGACGTCCGACAA
GCCATCCACAACCACGCAACACTCAAACGGGTCGCTCATGTACCACAACT
TCTCGAGCCGTTCTTACGGGGGGCGGGCTGCTTGGCAGACGGCGAACTCG
AGGCAGCCTTCGAGCATCATCGGGGCGCGTTCGCCATGGCTTGTGGGATG
TACAAGGAGCAGCAAGAAGAGTGGTTGCTCAACCTTATGCGGAAGCTGGC
GCGAGGGCTGCGGCTATTGGCACAAAAGGTGGATAAGGAAACAGTGCGGC
TGGACCCCATAATGAACGAGGCCGTCAAGGCCATCTCAGACAAGTTCCGT
GTTTTTGGCACGGTCACAGCTAGTGGACGTCGACGGGTAGCCCTGATGCT
TGCGAACGAGCAGATTATTTGCTACCTCCAATTAAACAACCCACGGCAAT
GCAAGCCATTGACTGATTGGGCCGATGCCCGACATAAGCTGACGGACGAG
GATTTCACCTCGGGAGAGTTTGCACAGGCGGATGCTGTGACATATCATTT
CTTGCGGGCCCGTCTCTTTTTGCTCGACACGAATTATAAGGAGGCGGAGA
GGTTTTTGGCATATGCCTTCAAGCATTGTCCTGTGGCAGCGAAGAGGAAT
AAGCGGACGATTTTGTCGTACATGGTGCCAGTAAAACTTAATTTGGGGTT
GCTACCGCGGGTACGACGGAGGGTGGAGGGAATGCGGGGTAGAGGGAGGG
AGAGAGGGAGGACTGGGAGAGGTGGTTGAGCTTTCATTTTTGTCCGTCAA
GATAAGTGCGGGATTTCTCTTCTCCTTGTCCTCTAAATCACCTTTCTCCC
CCAACAATTTCTCGAAGCGCGGCCTCCTGGAGCGTTTCCAGCTCAAGGAG
TTCGAGTCGTTGGTGGCTGCCCTGCGGGACGGGGACTTCCGCCTGTATCA
GCAAGAGCTAGATCGATACCAAGACGAGTTTATCGCACGCGGCGTTTACA
TCATTTTAGAGAAGCTCAAGTTGTTCGTGTATCGGAACTTCTTCAAGAAG
ATGTCAGTACATGGGGATGGAGAGAGGGAGGGAGGGAGGGAGGGGGGGCC
CGCAAGAGAGGAAGGACTTCTACTACTTGAGGCTTGCAATTAGCTATGCC
ATTTCTTCCTTCTGTTGATCAGGCTGTCATCATGAATACTCACAATCTCC
AAACGCTCACATCACTCAACGGAACCAACAGCTGGGTGCTTAAAGGCAAG
GAGTCAAGGCTCTCGATCGACCTCGTCTTTCAGCTGCACCAAGCGATAGA
TCCCGCTGCGGACGTGGACATTGACGAAATTGAGTGTTTGCTCGCCAACT
TGATCTTCAAAGGGAATATTCGAGGGTATATTGCTCACGAAAAGCGCATT
TTGGTGCTGTCGAAGGACAATCCTTTCCCGTATCCGCAACAAAAGTAGGG
AAAAGGAAGGAGGGTGCAAGGTGGGCATGTATAGCTAACAAAGATATAAA
AGCGCGAGGGAAAATAGGCAATGGTTGA back to topCoding sequence (CDS) from alignment at chr8:568311..569988- >NO08G01860.2 ID=NO08G01860.2|Name=NO08G01860.2|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr8:568311..569988- (Nannochloropsis oceanica) ATGGTATATCAGCAGGTCCCCGCATACCTGACAGCCGTGGCCGAAGCTTC CCAACAAGCCGATGGCATTGCCTTAACGCACCTCTTCTCCTATCCCTGTC TCTCCCATCGCCTAGGGCACCAGTTTGCCCGCCTGGACGTCCGACAAGCC ATCCACAACCACGCAACACTCAAACGGGTCGCTCATGTACCACAACTTCT CGAGCCGTTCTTACGGGGGGCGGGCTGCTTGGCAGACGGCGAACTCGAGG CAGCCTTCGAGCATCATCGGGGCGCGTTCGCCATGGCTTGTGGGATGTAC AAGGAGCAGCAAGAAGAGTGGTTGCTCAACCTTATGCGGAAGCTGGCGCG AGGGCTGCGGCTATTGGCACAAAAGGTGGATAAGGAAACAGTGCGGCTGG ACCCCATAATGAACGAGGCCGTCAAGGCCATCTCAGACAAGTTCCGTGTT TTTGGCACGGTCACAGCTAGTGGACGTCGACGGGTAGCCCTGATGCTTGC GAACGAGCAGATTATTTGCTACCTCCAATTAAACAACCCACGGCAATGCA AGCCATTGACTGATTGGGCCGATGCCCGACATAAGCTGACGGACGAGGAT TTCACCTCGGGAGAGTTTGCACAGGCGGATGCTGTGACATATCATTTCTT GCGGGCCCGTCTCTTTTTGCTCGACACGAATTATAAGGAGGCGGAGAGGT TTTTGGCATATGCCTTCAAGCATTGTCCTGTGGCAGCGAAGAGGAATAAG CGGACGATTTTGTCGTACATGGTGCCAGTAAAACTTAATTTGGGGTTGCT ACCGCGGGTACGACGGAGGGTGGAGGGAATGCGGGGTAGAGGGAGGGAGA GAGGGAGGACTGGGAGAGGTGGTTGA back to top
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