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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:564150..566516 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01840.1 vs.
Match: XP_005854445.1 (hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526]; EKU21911.1 hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526]; EWM26768.1 aureochrome1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 402.9 bits (1034), Expect = 1.300e-108 Identity = 202/226 (89.38%), Postives = 215/226 (95.13%), Query Frame = 0
Query: 234 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRTHLKDGAHDLLKSCEVEPEDSLLTSDPASATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLNLTGYQMDQILGRNCRFLQGPDTDPSAVDKIRRAIEDGTDGSVCLLNYRADGTTFWNQFFIAALRGADGNVVNFVGVQCRVSEEYALEVLKKEMESTTSTGAPS 460
MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIR+HLK+GA DLLK+CEVE ++S+L SDP SATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFL+LTGYQMDQILGRNCRFLQGPDTDP+AVDKIRRAIEDGTDGSVCLLNYRADG+TFWNQFFIAALRGADGN+VN+VGVQC+VSEEYA EVLKKE S+T A S
Sbjct: 1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLKEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKKEATSSTVAEASS 226
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01840.1 ID=NO08G01840.1|Name=NO08G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp
AACCTCACACACCCTCCATTTTCTCTGGAGTACATGAAGCCAGAGTGCAA
CAACCGTCCTCCACTGCGATATTTTTGGCACCTCACTCAATCCTTGTGAC
CATCTCTCCAATCTTCCTTAGTTGTTGTTATTATAAGAGTAGGATGGCGC
TTCTGAGGGCAGGCGCGATCGTGTGGTGAAGCTGTCGCGCTTGATATGGG
AAGATCCTGCGCTTCACATGCCGACTTGCTTCTTTGATGATTGGGAGTCT
TGCATTTAATGTCGCCCTCCTTCGGTCCCACCCTGCGTGCATCACGCTGG
CACATTTAAGCATGATGCGGACAATTACCTGCGGTCGCGACACGGGCCTG
GTTTGTGGCATTCGGTCTTTCGCCTGGAACAGAATTTCGCCTCATGGCCG
GTAGCTTTCATCGAGCATCTATCATCCATGGCTCCTTCGGTTGTGTTATA
GGACATTTTTGGTCTCTATACTTTTACTATCAGTGAAATATACGCTATTT
CATTACTTCCGAAGCCCGGGAATTTCCGGCTGGCCAATCTTAAGACCTGT
CGACGCTCCATAGTCCCGAGCATGACAGGGTCTACGCCACTGCCGCTACT
TGCTGTTGGTCGCCTTAGCATCCTCATCCCAGCATTTCTAACCCTTTCTC
CTCTTTCTCCCCGCGCTTCATAATGCACAGCATAACATACGTACTGGCGG
GCACATAAGCCCTTGATCTCGGGGCATTTTATCGCGCTCTCCTTTCCTCA
ACCCCCGCTGTCCCAAGCCACTGGCGATTAACCACGGTCTCAGTTGCCTA
CCCGCCGATGGAAGGGCTAGGACAGCCGGGAGATGCCGGGGGGGGAAGTG
GCAGCAGTACTGGTGGAGGTGCATCAGCAGGAGCCAGCGCCAGCTTCCCC
CCTCCTCCAGTCTTTGGCTTCTCCAGGGACGACTCGATTAATCTGGAGGA
CATCTTCGTAGATTGGTTCAACGAAGATAATCTCAACGGCCCGCCTTCTT
CCTATCAAAGTAGTAGCCAGGATTCTGCTGCTCCTGCTATCCTTCCGCAA
GAGGCTTATGTCCCCGCCCTCACCACCGCTCAGAAGCTCCAGCAGTTGCA
ACAGCTTCAACAGCAGCAACGACTGGAGCAGCAGCAGCTTCTGGCGTCGC
ACCAGGCGTCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCAGCAG
TCAGGAATTGGGAAGGCAGGGAGAACGTCGCCATTGACGATGATGATGCC
TACGGGAGGAGATAAAAGCAAGGCTGCTGGTGCTGCTACTGTTGGTGGTG
GGAGGGCCACGGTGGTGAACAATGGAGGAGGAATGGGAGGGGTTGAGGAC
GAGGAAGGGGAGGAGGACGACTTTGAGGATGACTATGAGGACGATGATGG
GGGGACTAGCACAGGGAGTGGAGGGGGAGGAGGAGGGCGACGCAAGAAGC
GGCAAAGGGGCGCGGGAGGGGGGGGAAGTATGGGTGGAGGGAGTTCGGGG
AGGAGGATGACTGAGGAGCAGAAAGTGGAAAGGCGGGAGAGGAATCGGGA
GCATGCCAAACGGTCCCGTGTGAGGAAGAAGTTCTTGTTGGAGTCATTGC
AGAAGAGCGTGAATGCCTTGCAGGAGGAGAACGACAAGCTGCGGGGGGCC
ATTCGCACGCATCTCAAGGACGGGGCACACGATTTACTCAAGTCGTGTGA
GGTGGAGCCGGAGGACTCTTTGTTGACCTCAGATCCTGCATCGGCGACCA
AGATTTTGGATGATCCAGATTACACCCTTGTGAAGGCCCTACAGACCGCC
CAGCAGAACTTCGTGATCACCGACCCGACGCTGCCTGACAATCCCATTGT
CTACGCCTCTGGCGGCTTTTTAAATCTCACCGGCTACCAAATGGATCAAA
TCCTCGGCCGCAACTGTCGCTTCCTCCAAGGGCCTGACACGGACCCTTCC
GCCGTGGACAAGATCCGAAGAGCCATCGAAGATGGGACAGACGGGAGCGT
GTGTCTGTTGAATTACCGCGCGGACGGCACGACTTTTTGGAACCAGTTTT
TCATCGCGGCCCTGCGTGGGGCGGATGGGAACGTTGTCAACTTTGTTGGT
GTACAATGCCGTGTGAGCGAGGAGTACGCGCTGGAGGTGCTGAAAAAGGA
GATGGAGAGCACGACCTCGACGGGGGCGCCGTCGACGGGGATGCATTTGA
AGGGATAG back to topprotein sequence of NO08G01840.1 >NO08G01840.1-protein ID=NO08G01840.1-protein|Name=NO08G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MEGLGQPGDAGGGSGSSTGGGASAGASASFPPPPVFGFSRDDSINLEDIF
VDWFNEDNLNGPPSSYQSSSQDSAAPAILPQEAYVPALTTAQKLQQLQQL
QQQQRLEQQQLLASHQASEQQQQQQQQQFQQSGIGKAGRTSPLTMMMPTG
GDKSKAAGAATVGGGRATVVNNGGGMGGVEDEEGEEDDFEDDYEDDDGGT
STGSGGGGGGRRKKRQRGAGGGGSMGGGSSGRRMTEEQKVERRERNREHA
KRSRVRKKFLLESLQKSVNALQEENDKLRGAIRTHLKDGAHDLLKSCEVE
PEDSLLTSDPASATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYA
SGGFLNLTGYQMDQILGRNCRFLQGPDTDPSAVDKIRRAIEDGTDGSVCL
LNYRADGTTFWNQFFIAALRGADGNVVNFVGVQCRVSEEYALEVLKKEME
STTSTGAPSTGMHLKG* back to topmRNA from alignment at chr8:564150..566516- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01840.1 ID=NO08G01840.1|Name=NO08G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp|location=Sequence derived from alignment at chr8:564150..566516- (Nannochloropsis oceanica)
AACCTCACACACCCTCCATTTTCTCTGGAGTACATGAAGCCAGAGTGCAA
CAACCGTCCTCCACTGCGATATTTTTGGCACCTCACTCAATCCTTGTGAC
CATCTCTCCAATCTTCCTTAGTTGTTGTTATTATAAGAGTAGGATGGCGC
TTCTGAGGGCAGGCGCGATCGTGTGGTGAAGCTGTCGCGCTTGATATGGG
AAGATCCTGCGCTTCACATGCCGACTTGCTTCTTTGATGATTGGGAGTCT
TGCATTTAATGTCGCCCTCCTTCGGTCCCACCCTGCGTGCATCACGCTGG
CACATTTAAGCATGATGCGGACAATTACCTGCGGTCGCGACACGGGCCTG
GTTTGTGGCATTCGGTCTTTCGCCTGGAACAGAATTTCGCCTCATGGCCG
GTAGCTTTCATCGAGCATCTATCATCCATGGCTCCTTCGGTTGTGTTATA
GGACATTTTTGGTCTCTATACTTTTACTATCAGTGAAATATACGCTATTT
CATTACTTCCGAAGCCCGGGAATTTCCGGCTGGCCAATCTTAAGACCTGT
CGACGCTCCATAGTCCCGAGCATGACAGGGTCTACGCCACTGCCGCTACT
TGCTGTTGGTCGCCTTAGCATCCTCATCCCAGCATTTCTAACCCTTTCTC
CTCTTTCTCCCCGCGCTTCATAATGCACAGCATAACATACGTACTGGCGG
GCACATAAGCCCTTGATCTCGGGGCATTTTATCGCGCTCTCCTTTCCTCA
ACCCCCGCTGTCCCAAGCCACTGGCGATTAACCACGGTCTCAGTTGCCTA
CCCGCCGATGGAAGGGCTAGGACAGCCGGGAGATGCCGGGGGGGGAAGTG
GCAGCAGTACTGGTGGAGGTGCATCAGCAGGAGCCAGCGCCAGCTTCCCC
CCTCCTCCAGTCTTTGGCTTCTCCAGGGACGACTCGATTAATCTGGAGGA
CATCTTCGTAGATTGGTTCAACGAAGATAATCTCAACGGCCCGCCTTCTT
CCTATCAAAGTAGTAGCCAGGATTCTGCTGCTCCTGCTATCCTTCCGCAA
GAGGCTTATGTCCCCGCCCTCACCACCGCTCAGAAGCTCCAGCAGTTGCA
ACAGCTTCAACAGCAGCAACGACTGGAGCAGCAGCAGCTTCTGGCGTCGC
ACCAGGCGTCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCAGCAG
TCAGGAATTGGGAAGGCAGGGAGAACGTCGCCATTGACGATGATGATGCC
TACGGGAGGAGATAAAAGCAAGGCTGCTGGTGCTGCTACTGTTGGTGGTG
GGAGGGCCACGGTGGTGAACAATGGAGGAGGAATGGGAGGGGTTGAGGAC
GAGGAAGGGGAGGAGGACGACTTTGAGGATGACTATGAGGACGATGATGG
GGGGACTAGCACAGGGAGTGGAGGGGGAGGAGGAGGGCGACGCAAGAAGC
GGCAAAGGGGCGCGGGAGGGGGGGGAAGTATGGGTGGAGGGAGTTCGGGG
AGGAGGATGACTGAGGAGCAGAAAGTGGAAAGGCGGGAGAGGAATCGGGA
GCATGCCAAACGGTCCCGTGTGAGGAAGAAGTTCTTGTTGGAGTCATTGC
AGAAGAGCGTGAATGCCTTGCAGGAGGAGAACGACAAGCTGCGGGGGGCC
ATTCGCACGCATCTCAAGGACGGGGCACACGATTTACTCAAGTCGTGTGA
GGTGGAGCCGGAGGACTCTTTGTTGACCTCAGATCCTGCATCGGCGACCA
AGATTTTGGATGATCCAGATTACACCCTTGTGAAGGCCCTACAGACCGCC
CAGCAGAACTTCGTGATCACCGACCCGACGCTGCCTGACAATCGTAAGTT
GGCTGAAAGGGAGTTTGGCTGTGTGGGTTCCGTGACTGCTTATATACGTG
TACCACAAGAATAGATCAAGATAACCACCACTTTTTGCTCCACTTATCGC
CCCCCCCTCTCCCCCTCTTCTCTCTCTCACTCTCTCCTGTTTTTGCACAC
AGCCATTGTCTACGCCTCTGGCGGCTTTTTAAATCTCACCGGCTACCAAA
TGGATCAAATCCTCGGCCGCAACTGTCGCTTCCTCCAAGGGCCTGACACG
GACCCTTCCGCCGTGGACAAGATCCGAAGAGCCATCGAAGATGGGACAGA
CGGGAGCGTGTGTCTGTTGAATTACCGCGCGGACGGCACGACTTTTTGGA
ACCAGTTTTTCATCGCGGCCCTGCGTGGGGCGGATGGGAACGTTGTCAAC
TTTGTTGGTGTACAATGCCGTGTGAGCGAGGAGTACGCGCTGGAGGTGCT
GAAAAAGGAGATGGAGAGCACGACCTCGACGGGGGCGCCGTCGACGGGGA
TGCATTTGAAGGGATAG back to topCoding sequence (CDS) from alignment at chr8:564150..566516- >NO08G01840.1 ID=NO08G01840.1|Name=NO08G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr8:564150..566516- (Nannochloropsis oceanica)
ATGGAAGGGCTAGGACAGCCGGGAGATGCCGGGGGGGGAAGTGGCAGCAG
TACTGGTGGAGGTGCATCAGCAGGAGCCAGCGCCAGCTTCCCCCCTCCTC
CAGTCTTTGGCTTCTCCAGGGACGACTCGATTAATCTGGAGGACATCTTC
GTAGATTGGTTCAACGAAGATAATCTCAACGGCCCGCCTTCTTCCTATCA
AAGTAGTAGCCAGGATTCTGCTGCTCCTGCTATCCTTCCGCAAGAGGCTT
ATGTCCCCGCCCTCACCACCGCTCAGAAGCTCCAGCAGTTGCAACAGCTT
CAACAGCAGCAACGACTGGAGCAGCAGCAGCTTCTGGCGTCGCACCAGGC
GTCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCAGCAGTCAGGAA
TTGGGAAGGCAGGGAGAACGTCGCCATTGACGATGATGATGCCTACGGGA
GGAGATAAAAGCAAGGCTGCTGGTGCTGCTACTGTTGGTGGTGGGAGGGC
CACGGTGGTGAACAATGGAGGAGGAATGGGAGGGGTTGAGGACGAGGAAG
GGGAGGAGGACGACTTTGAGGATGACTATGAGGACGATGATGGGGGGACT
AGCACAGGGAGTGGAGGGGGAGGAGGAGGGCGACGCAAGAAGCGGCAAAG
GGGCGCGGGAGGGGGGGGAAGTATGGGTGGAGGGAGTTCGGGGAGGAGGA
TGACTGAGGAGCAGAAAGTGGAAAGGCGGGAGAGGAATCGGGAGCATGCC
AAACGGTCCCGTGTGAGGAAGAAGTTCTTGTTGGAGTCATTGCAGAAGAG
CGTGAATGCCTTGCAGGAGGAGAACGACAAGCTGCGGGGGGCCATTCGCA
CGCATCTCAAGGACGGGGCACACGATTTACTCAAGTCGTGTGAGGTGGAG
CCGGAGGACTCTTTGTTGACCTCAGATCCTGCATCGGCGACCAAGATTTT
GGATGATCCAGATTACACCCTTGTGAAGGCCCTACAGACCGCCCAGCAGA
ACTTCGTGATCACCGACCCGACGCTGCCTGACAATCCCATTGTCTACGCC
TCTGGCGGCTTTTTAAATCTCACCGGCTACCAAATGGATCAAATCCTCGG
CCGCAACTGTCGCTTCCTCCAAGGGCCTGACACGGACCCTTCCGCCGTGG
ACAAGATCCGAAGAGCCATCGAAGATGGGACAGACGGGAGCGTGTGTCTG
TTGAATTACCGCGCGGACGGCACGACTTTTTGGAACCAGTTTTTCATCGC
GGCCCTGCGTGGGGCGGATGGGAACGTTGTCAACTTTGTTGGTGTACAAT
GCCGTGTGAGCGAGGAGTACGCGCTGGAGGTGCTGAAAAAGGAGATGGAG
AGCACGACCTCGACGGGGGCGCCGTCGACGGGGATGCATTTGAAGGGATA
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