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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:556673..558736 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01820.1 vs.
Match: EWM26698.1 (Zn(2)-C6 fungal-type DNA-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 429.9 bits (1104), Expect = 1.500e-116 Identity = 312/674 (46.29%), Postives = 390/674 (57.86%), Query Frame = 0
Query: 18 EGEPPPTPSSVFPGVPLDKSDDQYVGSICVAGNTLEKQENCNAEDEGEDGNMDGSQQLQDNDAGQ-EGGPYPNTIHATNTGVAQRVKISINTSLDEVSMDRTMADGYGDLNSPRHRTTPRRSCGGPKSWQEEKTFGDDPHEGKRPCSTCRKSKVRCDRGFPCTRCVRLGIDCHEQAKVRRGAGGGGGGSGPSSRSQSGSGSRQNSMHKASSSGSMALSTQTGGEEKTCMSSSASISSSLSSSSSSSSSGQSGERRRRSNSTSSTPSSKRNGGGSGEGRGRTRVSTATAPCA-------FSSSSIPPATVPGPAMFSSAAIINGDNGFHDTSGNHDNSDSTTSSSLNSNSTNNHLTNFAPGSCRSFVLSNEPNPSPNPSPTPSSSPFNMQHLAQLPSYQQYPRHEKQ-QRHPISSPARLHLQQPHYLQNHHQQQQQQQQQQQQQQQQHQQQASYLISPMQTVMESFLKLHAQSRICRGKTLAVMRAWAVTYAKDRGACALGDRLGVLSSALGMDWKMVLSDRATVGEAVEATRGGPRAPETAVAFDATKLDPFLKALYSDAGAAAALVTVQGHTKLLGNELFARDFLDPCSCNQAWAQAQERKQQGLTDPIDILGSLLSREDQGEFFESVGAMLFSNPRPCAEVQHIVRALTRRRESGGVLCLARLRFHIADGGG 683
EGEPPP + ++ ++Q+V + G E + A+ E + G + G Q +A GG P N G+ I+TSL+ + D T A G ++ SPR+RTTPRRSCGGPK W EEK FG+DPH GKRPCSTCRKSKVRCDRGFPCTRCVRLG+DC EQA+VRRG G P S + S + S+H+ SS+ SM Q G E S S+S SS + + G+ G R R S N S G T + P A F SS +P T+ PA+ + A ++ F+ + D S++ ++ NH T RSF+L+ + P P +S Q+ ++ P QQ + H + PA+LH HHQ A+YL+SP QTVMESFLKLHAQSRICRGK+LAVMR+WA+ Y+K GA ALGDRL VLS+ALG+DWK L+D ATV EA AT G APE VAF+ LDPFL+ALY+DA AAAALV QGHT+LLGN LF+RDF+DP SCN AW Q +ER+Q+ TDP+DILG LLSREDQGEFF SVGAMLFSNPRPCAE+ HI R LTR+RES +L L R+RFH+ADGGG
Sbjct: 12 EGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEGVHTADMERKGGQLQGRAAAQSEEAAVFMGGACPEN----NMGMR------ISTSLNSIETDVTNA-GRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCRKSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTSG--GSVHRESSACSMDSLNQAGKEVIMPPSVSSSSPSSQGQRRRADAFGKRGGGRGRGRSRGIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSSHLP--TLSDPALLCADAALDAGASFYGLGSGQEGDD----CSMSQGASGNHPTR------RSFLLNPDGPSLPLQHPHQAS-----QYHSKRPRQQQNQEEQTHVPYHALKQPAQLHFSPGRRPAPHHQLPA-------------HASATYLVSPTQTVMESFLKLHAQSRICRGKSLAVMRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATTGS-TAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRES--ILALVRVRFHLADGGG 639
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01820.1 ID=NO08G01820.1|Name=NO08G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp
ATGCCTCTTGCAAACATAAACATATCAACGCCCGGAGGGCTCATTCGCGA
GGAGGGCGAGCCGCCGCCGACCCCTTCGTCTGTCTTTCCCGGGGTGCCGT
TAGATAAGAGTGATGACCAGTATGTCGGCTCCATCTGCGTTGCGGGGAAT
ACATTGGAGAAGCAAGAGAATTGCAACGCCGAGGATGAAGGGGAGGATGG
CAACATGGATGGCAGCCAGCAGCTGCAGGACAACGATGCCGGACAGGAGG
GAGGGCCCTACCCCAACACCATTCACGCCACCAACACCGGTGTGGCTCAA
AGGGTGAAAATTAGCATTAATACCAGCTTGGACGAAGTGAGCATGGATAG
GACCATGGCCGATGGCTATGGGGATCTGAACAGCCCCCGGCATCGTACCA
CCCCACGTCGGTCCTGCGGTGGGCCTAAGTCTTGGCAAGAGGAGAAGACA
TTTGGCGATGACCCTCACGAGGGAAAGCGACCGTGCTCTACGTGTCGCAA
GAGCAAGGTGAGATGTGACCGCGGCTTTCCATGCACGCGGTGTGTGAGGT
TGGGGATTGACTGTCACGAGCAGGCGAAGGTCCGTAGGGGAGCTGGAGGA
GGGGGGGGAGGGAGCGGACCCTCTTCTCGCTCGCAAAGTGGGAGTGGGAG
TCGACAGAACAGCATGCACAAAGCCTCTTCTTCGGGCTCGATGGCCTTGA
GCACCCAGACGGGCGGGGAGGAGAAGACTTGCATGTCCTCCTCTGCCTCC
ATTTCCTCCTCCTTGTCCTCGTCCTCCTCGTCCTCGTCCTCTGGGCAAAG
TGGAGAGCGGAGGCGCCGCTCAAATTCCACGTCCAGCACCCCCTCATCCA
AGCGAAATGGGGGAGGAAGTGGGGAAGGGCGAGGGCGAACGCGTGTATCG
ACTGCTACTGCGCCTTGTGCCTTCTCCTCTTCCTCAATTCCTCCTGCCAC
TGTGCCTGGTCCTGCCATGTTTTCCTCTGCAGCTATCATCAATGGCGACA
ACGGATTTCATGACACCAGCGGCAACCACGACAACAGCGACAGCACCACG
AGCAGCAGCTTGAACAGCAACAGCACCAACAACCACCTCACCAATTTTGC
TCCTGGCAGTTGCCGTAGCTTCGTGCTGTCCAACGAGCCCAACCCCAGCC
CCAACCCCAGCCCCACCCCCTCATCCTCCCCATTCAACATGCAGCATCTT
GCCCAGCTACCCTCGTACCAGCAATACCCCCGTCACGAGAAGCAGCAAAG
ACACCCCATCTCTTCCCCTGCCAGGCTGCACCTCCAACAGCCCCACTATC
TCCAAAACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAACAACAACAGCATCAGCAACAAGCGAGCTACCTCATCTCTCCCATGCA
GACCGTCATGGAGTCCTTCCTCAAGCTTCATGCCCAATCCCGGATTTGTC
GTGGGAAGACCCTGGCTGTGATGCGTGCCTGGGCTGTGACCTACGCGAAA
GATCGAGGCGCTTGCGCGCTCGGTGACCGACTCGGCGTCCTTTCAAGTGC
CCTCGGGATGGATTGGAAGATGGTTCTCTCGGACAGAGCAACGGTGGGGG
AGGCAGTGGAGGCCACGAGAGGTGGACCACGCGCTCCAGAGACAGCTGTC
GCCTTTGATGCGACCAAGCTAGATCCGTTCCTGAAAGCCCTGTATTCGGA
TGCAGGGGCTGCCGCCGCGCTAGTGACAGTGCAAGGACACACGAAATTGT
TGGGGAATGAATTGTTTGCGCGGGATTTTCTTGACCCCTGTTCCTGTAAC
CAGGCGTGGGCGCAGGCGCAGGAGAGAAAGCAGCAGGGACTCACGGACCC
AATCGATATCTTGGGGAGTCTGTTAAGTAGGGAAGACCAGGGAGAGTTTT
TTGAGAGTGTGGGTGCGATGTTGTTCTCAAATCCGAGGCCCTGCGCGGAA
GTGCAGCACATAGTCAGGGCATTGACGAGGAGGAGGGAGAGTGGGGGGGT
GTTGTGCTTAGCCAGACTTAGGTTTCACATCGCCGATGGGGGGGGTATTC
AGCGTTGGTATTGA back to topprotein sequence of NO08G01820.1 >NO08G01820.1-protein ID=NO08G01820.1-protein|Name=NO08G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp
MPLANINISTPGGLIREEGEPPPTPSSVFPGVPLDKSDDQYVGSICVAGN
TLEKQENCNAEDEGEDGNMDGSQQLQDNDAGQEGGPYPNTIHATNTGVAQ
RVKISINTSLDEVSMDRTMADGYGDLNSPRHRTTPRRSCGGPKSWQEEKT
FGDDPHEGKRPCSTCRKSKVRCDRGFPCTRCVRLGIDCHEQAKVRRGAGG
GGGGSGPSSRSQSGSGSRQNSMHKASSSGSMALSTQTGGEEKTCMSSSAS
ISSSLSSSSSSSSSGQSGERRRRSNSTSSTPSSKRNGGGSGEGRGRTRVS
TATAPCAFSSSSIPPATVPGPAMFSSAAIINGDNGFHDTSGNHDNSDSTT
SSSLNSNSTNNHLTNFAPGSCRSFVLSNEPNPSPNPSPTPSSSPFNMQHL
AQLPSYQQYPRHEKQQRHPISSPARLHLQQPHYLQNHHQQQQQQQQQQQQ
QQQQHQQQASYLISPMQTVMESFLKLHAQSRICRGKTLAVMRAWAVTYAK
DRGACALGDRLGVLSSALGMDWKMVLSDRATVGEAVEATRGGPRAPETAV
AFDATKLDPFLKALYSDAGAAAALVTVQGHTKLLGNELFARDFLDPCSCN
QAWAQAQERKQQGLTDPIDILGSLLSREDQGEFFESVGAMLFSNPRPCAE
VQHIVRALTRRRESGGVLCLARLRFHIADGGGIQRWY* back to topmRNA from alignment at chr8:556673..558736- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01820.1 ID=NO08G01820.1|Name=NO08G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp|location=Sequence derived from alignment at chr8:556673..558736- (Nannochloropsis oceanica)
ATGCCTCTTGCAAACATAAACATATCAACGCCCGGAGGGCTCATTCGCGA
GGAGGGCGAGCCGCCGCCGACCCCTTCGTCTGTCTTTCCCGGGGTGCCGT
TAGATAAGAGTGATGACCAGTATGTCGGCTCCATCTGCGTTGCGGGGAAT
ACATTGGAGAAGCAAGAGAATTGCAACGCCGAGGATGAAGGGGAGGATGG
CAACATGGATGGCAGCCAGCAGCTGCAGGACAACGATGCCGGACAGGAGG
GAGGGCCCTACCCCAACACCATTCACGCCACCAACACCGGTGTGGCTCAA
AGGGTGAAAATTAGCATTAATACCAGCTTGGACGAAGTGAGCATGGATAG
GACCATGGCCGATGGCTATGGGGATCTGAACAGCCCCCGGCATCGTACCA
CCCCACGTCGGTCCTGCGGTGGGCCTAAGTCTTGGCAAGAGGAGAAGACA
TTTGGCGATGACCCTCACGAGGGAAAGCGACCGTGCTCTACGTGTCGCAA
GAGCAAGGTGAGATGTGACCGCGGCTTTCCATGCACGCGGTGTGTGAGGT
TGGGGATTGACTGTCACGAGCAGGCGAAGGTCCGTAGGGGAGCTGGAGGA
GGGGGGGGAGGGAGCGGACCCTCTTCTCGCTCGCAAAGTGGGAGTGGGAG
TCGACAGAACAGCATGCACAAAGCCTCTTCTTCGGGCTCGATGGCCTTGA
GCACCCAGACGGGCGGGGAGGAGAAGACTTGCATGTCCTCCTCTGCCTCC
ATTTCCTCCTCCTTGTCCTCGTCCTCCTCGTCCTCGTCCTCTGGGCAAAG
TGGAGAGCGGAGGCGCCGCTCAAATTCCACGTCCAGCACCCCCTCATCCA
AGCGAAATGGGGGAGGAAGTGGGGAAGGGCGAGGGCGAACGCGTGTATCG
ACTGCTACTGCGCCTTGTGCCTTCTCCTCTTCCTCAATTCCTCCTGCCAC
TGTGCCTGGTCCTGCCATGTTTTCCTCTGCAGCTATCATCAATGGCGACA
ACGGATTTCATGACACCAGCGGCAACCACGACAACAGCGACAGCACCACG
AGCAGCAGCTTGAACAGCAACAGCACCAACAACCACCTCACCAATTTTGC
TCCTGGCAGTTGCCGTAGCTTCGTGCTGTCCAACGAGCCCAACCCCAGCC
CCAACCCCAGCCCCACCCCCTCATCCTCCCCATTCAACATGCAGCATCTT
GCCCAGCTACCCTCGTACCAGCAATACCCCCGTCACGAGAAGCAGCAAAG
ACACCCCATCTCTTCCCCTGCCAGGCTGCACCTCCAACAGCCCCACTATC
TCCAAAACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAACAACAACAGCATCAGCAACAAGCGAGCTACCTCATCTCTCCCATGCA
GACCGTCATGGAGTCCTTCCTCAAGCTTCATGCCCAATCCCGGATTTGTC
GTGGGAAGACCCTGGCTGTGATGCGTGCCTGGGCTGTGACCTACGCGAAA
GATCGAGGCGCTTGCGCGCTCGGTGACCGACTCGGCGTCCTTTCAAGTGC
CCTCGGGATGGATTGGAAGATGGTTCTCTCGGACAGAGCAACGGTGGGGG
AGGCAGTGGAGGCCACGAGAGGTGGACCACGCGCTCCAGAGACAGCTGTC
GCCTTTGATGCGACCAAGCTAGATCCGTTCCTGAAAGCCCTGTATTCGGA
TGCAGGGGCTGCCGCCGCGCTAGTGACAGTGCAAGGACACACGAAATTGT
TGGGGAATGAATTGTTTGCGCGGGATTTTCTTGACCCCTGTTCCTGTAAC
CAGGCGTGGGCGCAGGCGCAGGAGAGAAAGCAGCAGGGACTCACGGACCC
AATCGATATCTTGGGGAGTCTGTTAAGTAGGGAAGACCAGGGAGAGTTTT
TTGAGAGTGTGGGTGCGATGTTGTTCTCAAATCCGAGGCCCTGCGCGGAA
GTGCAGCACATAGTCAGGGCATTGACGAGGAGGAGGGAGAGTGGGGGGGT
GTTGTGCTTAGCCAGACTTAGGTTTCACATCGCCGATGGGGGGGGTATTC
AGCGTTGGTATTGA back to topCoding sequence (CDS) from alignment at chr8:556673..558736- >NO08G01820.1 ID=NO08G01820.1|Name=NO08G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at chr8:556673..558736- (Nannochloropsis oceanica)
ATGCCTCTTGCAAACATAAACATATCAACGCCCGGAGGGCTCATTCGCGA
GGAGGGCGAGCCGCCGCCGACCCCTTCGTCTGTCTTTCCCGGGGTGCCGT
TAGATAAGAGTGATGACCAGTATGTCGGCTCCATCTGCGTTGCGGGGAAT
ACATTGGAGAAGCAAGAGAATTGCAACGCCGAGGATGAAGGGGAGGATGG
CAACATGGATGGCAGCCAGCAGCTGCAGGACAACGATGCCGGACAGGAGG
GAGGGCCCTACCCCAACACCATTCACGCCACCAACACCGGTGTGGCTCAA
AGGGTGAAAATTAGCATTAATACCAGCTTGGACGAAGTGAGCATGGATAG
GACCATGGCCGATGGCTATGGGGATCTGAACAGCCCCCGGCATCGTACCA
CCCCACGTCGGTCCTGCGGTGGGCCTAAGTCTTGGCAAGAGGAGAAGACA
TTTGGCGATGACCCTCACGAGGGAAAGCGACCGTGCTCTACGTGTCGCAA
GAGCAAGGTGAGATGTGACCGCGGCTTTCCATGCACGCGGTGTGTGAGGT
TGGGGATTGACTGTCACGAGCAGGCGAAGGTCCGTAGGGGAGCTGGAGGA
GGGGGGGGAGGGAGCGGACCCTCTTCTCGCTCGCAAAGTGGGAGTGGGAG
TCGACAGAACAGCATGCACAAAGCCTCTTCTTCGGGCTCGATGGCCTTGA
GCACCCAGACGGGCGGGGAGGAGAAGACTTGCATGTCCTCCTCTGCCTCC
ATTTCCTCCTCCTTGTCCTCGTCCTCCTCGTCCTCGTCCTCTGGGCAAAG
TGGAGAGCGGAGGCGCCGCTCAAATTCCACGTCCAGCACCCCCTCATCCA
AGCGAAATGGGGGAGGAAGTGGGGAAGGGCGAGGGCGAACGCGTGTATCG
ACTGCTACTGCGCCTTGTGCCTTCTCCTCTTCCTCAATTCCTCCTGCCAC
TGTGCCTGGTCCTGCCATGTTTTCCTCTGCAGCTATCATCAATGGCGACA
ACGGATTTCATGACACCAGCGGCAACCACGACAACAGCGACAGCACCACG
AGCAGCAGCTTGAACAGCAACAGCACCAACAACCACCTCACCAATTTTGC
TCCTGGCAGTTGCCGTAGCTTCGTGCTGTCCAACGAGCCCAACCCCAGCC
CCAACCCCAGCCCCACCCCCTCATCCTCCCCATTCAACATGCAGCATCTT
GCCCAGCTACCCTCGTACCAGCAATACCCCCGTCACGAGAAGCAGCAAAG
ACACCCCATCTCTTCCCCTGCCAGGCTGCACCTCCAACAGCCCCACTATC
TCCAAAACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAACAACAACAGCATCAGCAACAAGCGAGCTACCTCATCTCTCCCATGCA
GACCGTCATGGAGTCCTTCCTCAAGCTTCATGCCCAATCCCGGATTTGTC
GTGGGAAGACCCTGGCTGTGATGCGTGCCTGGGCTGTGACCTACGCGAAA
GATCGAGGCGCTTGCGCGCTCGGTGACCGACTCGGCGTCCTTTCAAGTGC
CCTCGGGATGGATTGGAAGATGGTTCTCTCGGACAGAGCAACGGTGGGGG
AGGCAGTGGAGGCCACGAGAGGTGGACCACGCGCTCCAGAGACAGCTGTC
GCCTTTGATGCGACCAAGCTAGATCCGTTCCTGAAAGCCCTGTATTCGGA
TGCAGGGGCTGCCGCCGCGCTAGTGACAGTGCAAGGACACACGAAATTGT
TGGGGAATGAATTGTTTGCGCGGGATTTTCTTGACCCCTGTTCCTGTAAC
CAGGCGTGGGCGCAGGCGCAGGAGAGAAAGCAGCAGGGACTCACGGACCC
AATCGATATCTTGGGGAGTCTGTTAAGTAGGGAAGACCAGGGAGAGTTTT
TTGAGAGTGTGGGTGCGATGTTGTTCTCAAATCCGAGGCCCTGCGCGGAA
GTGCAGCACATAGTCAGGGCATTGACGAGGAGGAGGGAGAGTGGGGGGGT
GTTGTGCTTAGCCAGACTTAGGTTTCACATCGCCGATGGGGGGGGTATTC
AGCGTTGGTATTGA back to top
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