NO08G01800.1, NO08G01800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01800.1
Unique NameNO08G01800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1373
Alignment locationchr8:553180..554552 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:553180..554552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G01800.1 vs.
Match: XP_005854446.1 (triosephosphate isomerase (TIM) [Nannochloropsis gaditana CCMP526]; EKU21912.1 triosephosphate isomerase (TIM) [Nannochloropsis gaditana CCMP526]; EWM26658.1 triosephosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 475.7 bits (1223), Expect = 9.600e-131
Identity = 237/271 (87.45%), Postives = 254/271 (93.73%), Query Frame = 0
Query:    1 MSSSQGWAQYLARGVPPQKRYLIGGNWKANGTLAQAAGIVKTLNGGGPFPLEAEVVIAPPAHLLGFVKDNVRPDVAVSAQNSALTTKAGAFTGELPAALLKDFGLNWAIIGHSERREGFGGPGETDEVVATKTKVAVDAGLHVMACVGEKLEQREAGQTTEVVLKQLSAIASKLTKSDWSKVVVAYEPVWAIGTGKVATPEQAQDVHASIRAFLTEKIGASAASLVRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFITIIQAAKS 272
            MS+S+ WA+YLARGVPPQKRYLIGGNWKANGTLAQ AGIVK LN GG  PLEAEVVIAPPAHLLG+VKDN+RPDVAVSAQNSALTTK GAFTGELPA LLKDFGLNW IIGHSERREGFGGPGE+DEVVATKTKVAVDAGLHVMACVGEKLEQREAG+TTEVVL QL+AIASKL + DWSKVV+AYEPVWAIGTGKVATPEQAQ+VH SIRAF+ EK+GA  A+L+RIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDF+TII+A KS
Sbjct:    1 MSTSKAWAEYLARGVPPQKRYLIGGNWKANGTLAQTAGIVKILNQGGAIPLEAEVVIAPPAHLLGYVKDNLRPDVAVSAQNSALTTKPGAFTGELPAVLLKDFGLNWVIIGHSERREGFGGPGESDEVVATKTKVAVDAGLHVMACVGEKLEQREAGKTTEVVLSQLNAIASKLAREDWSKVVIAYEPVWAIGTGKVATPEQAQEVHESIRAFVKEKVGAQQAALLRIIYGGSVKGSSAPGLILKPDIDGFLVGGASLTSDFVTIIRAVKS 271          
The following BLAST results are available for this feature:
BLAST of NO08G01800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854446.19.600e-13187.45triosephosphate isomerase (TIM) [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01800NO08G01800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01800.1NO08G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01800.1.cds1NO08G01800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01800.1 ID=NO08G01800.1|Name=NO08G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
TACCAGTTGAGCAAGCACAACAGCTTCCTCCTGGGAGGGAAGAAGAACAA
AAGCTGTGTCTGGCAGGTGTGTACGCGACTGTACCTATCTACATCCCTAG
AAGCGCGTCTTTGCTTCCCATCACTCCGCTTATCGCCTGCCCTAAACCCT
CGGCTTCCCTCCGTCCCAAACGACCCCCACACGACACAGCACTCTTCAAC
CCAAGCGTAAGCTCCAACAGCAACAGCAAGTTATGTCCTCATCGCAAGGA
TGGGCGCAGTACCTGGCTCGTGGCGTGCCCCCCCAGAAGCGGTACCTGAT
CGGCGGCAACTGGAAGGCTAATGGGACCCTGGCCCAAGCCGCTGGCATTG
TGAAGACCCTGAATGGCGGCGGGCCTTTTCCATTGGAAGCCGAGGTGGTG
ATAGCGCCCCCCGCGCACCTGTTGGGATTCGTCAAGGACAACGTACGCCC
CGATGTGGCTGTTTCGGCTCAGAACTCGGCCTTGACCACTAAAGCCGGGG
CTTTTACGGGCGAGCTGCCCGCGGCGCTCTTGAAGGACTTCGGGTTGAAC
TGGGCCATTATCGGGCACTCAGAGCGTAGGGAGGGTTTTGGTGGGCCGGG
GGAGACGGACGAAGTGGTGGCGACCAAGACCAAGGTGGCCGTGGACGCGG
GTTTACACGTCATGGCATGTGTGGGGGAGAAATTGGAGCAGCGGGAGGCA
GGGCAAACGACCGAGGTAGTGTTGAAGCAGCTGAGCGCGATTGCCTCCAA
GTTGACCAAGTCGGACTGGTCCAAGGTGGTGGTGGCGTACGAGCCGGTGT
GGGCCATTGGCACGGGCAAGGTGGCAACACCGGAACAGGCCCAGGATGTG
CATGCGTCCATTCGCGCGTTCTTGACCGAGAAGATTGGGGCGAGCGCGGC
GTCGTTAGTTCGGATTATTTATGGGGGGTCCGTGAAGGGCTCGTCAGCCC
CGGGACTGATTTTGAAGCCGGACATCGACGGGTTTCTGGTGGGGGGGGCG
TCGTTGACGAGTGACTTTATCACGATTATCCAGGCAGCCAAAAGCTCATA
AATAGGGGAAGGAAGGAAGGGAGTGCTAGAGGGGAGCACGCACGTGAGAG
ATCCTCTCGGTGTGGACGAAGACAGGAAGATGAGGAAGTAAGAGAGAGAG
GGCGTATACAAGTTTGAGGGATTGGGACCCGAAGAAAAGCTATGCTCCGC
TTTGAGGAGCGATGCATTTATCCGGTTTTGTTTTGGGGGGCGATATGCTT
TTATAGATACACGTTTTTGGGTTGGAGATACAGAAATCGGTGGAAAAAAA
GGGGGGGAGAGTGCTTAAAGATTAAGAGAGGATCAATTGACGAGAAATCA
TCAAGTCTCTTTTACACCTGCGA
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protein sequence of NO08G01800.1

>NO08G01800.1-protein ID=NO08G01800.1-protein|Name=NO08G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MSSSQGWAQYLARGVPPQKRYLIGGNWKANGTLAQAAGIVKTLNGGGPFP
LEAEVVIAPPAHLLGFVKDNVRPDVAVSAQNSALTTKAGAFTGELPAALL
KDFGLNWAIIGHSERREGFGGPGETDEVVATKTKVAVDAGLHVMACVGEK
LEQREAGQTTEVVLKQLSAIASKLTKSDWSKVVVAYEPVWAIGTGKVATP
EQAQDVHASIRAFLTEKIGASAASLVRIIYGGSVKGSSAPGLILKPDIDG
FLVGGASLTSDFITIIQAAKSS*
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mRNA from alignment at chr8:553180..554552+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01800.1 ID=NO08G01800.1|Name=NO08G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at chr8:553180..554552+ (Nannochloropsis oceanica)
TACCAGTTGAGCAAGCACAACAGCTTCCTCCTGGGAGGGAAGAAGAACAA AAGCTGTGTCTGGCAGGTGTGTACGCGACTGTACCTATCTACATCCCTAG AAGCGCGTCTTTGCTTCCCATCACTCCGCTTATCGCCTGCCCTAAACCCT CGGCTTCCCTCCGTCCCAAACGACCCCCACACGACACAGCACTCTTCAAC CCAAGCGTAAGCTCCAACAGCAACAGCAAGTTATGTCCTCATCGCAAGGA TGGGCGCAGTACCTGGCTCGTGGCGTGCCCCCCCAGAAGCGGTACCTGAT CGGCGGCAACTGGAAGGCTAATGGGACCCTGGCCCAAGCCGCTGGCATTG TGAAGACCCTGAATGGCGGCGGGCCTTTTCCATTGGAAGCCGAGGTGGTG ATAGCGCCCCCCGCGCACCTGTTGGGATTCGTCAAGGACAACGTACGCCC CGATGTGGCTGTTTCGGCTCAGAACTCGGCCTTGACCACTAAAGCCGGGG CTTTTACGGGCGAGCTGCCCGCGGCGCTCTTGAAGGACTTCGGGTTGAAC TGGGCCATTATCGGGCACTCAGAGCGTAGGGAGGGTTTTGGTGGGCCGGG GGAGACGGACGAAGTGGTGGCGACCAAGACCAAGGTGGCCGTGGACGCGG GTTTACACGTCATGGCATGTGTGGGGGAGAAATTGGAGCAGCGGGAGGCA GGGCAAACGACCGAGGTAGTGTTGAAGCAGCTGAGCGCGATTGCCTCCAA GTTGACCAAGTCGGACTGGTCCAAGGTGGTGGTGGCGTACGAGCCGGTGT GGGCCATTGGCACGGGCAAGGTGGCAACACCGGAACAGGCCCAGGATGTG CATGCGTCCATTCGCGCGTTCTTGACCGAGAAGATTGGGGCGAGCGCGGC GTCGTTAGTTCGGATTATTTATGGGGGGTCCGTGAAGGGCTCGTCAGCCC CGGGACTGATTTTGAAGCCGGACATCGACGGGTTTCTGGTGGGGGGGGCG TCGTTGACGAGTGACTTTATCACGATTATCCAGGCAGCCAAAAGCTCATA AATAGGGGAAGGAAGGAAGGGAGTGCTAGAGGGGAGCACGCACGTGAGAG ATCCTCTCGGTGTGGACGAAGACAGGAAGATGAGGAAGTAAGAGAGAGAG GGCGTATACAAGTTTGAGGGATTGGGACCCGAAGAAAAGCTATGCTCCGC TTTGAGGAGCGATGCATTTATCCGGTTTTGTTTTGGGGGGCGATATGCTT TTATAGATACACGTTTTTGGGTTGGAGATACAGAAATCGGTGGAAAAAAA GGGGGGGAGAGTGCTTAAAGATTAAGAGAGGATCAATTGACGAGAAATCA TCAAGTCTCTTTTACACCTGCGA
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Coding sequence (CDS) from alignment at chr8:553180..554552+

>NO08G01800.1 ID=NO08G01800.1|Name=NO08G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr8:553180..554552+ (Nannochloropsis oceanica)
ATGTCCTCATCGCAAGGATGGGCGCAGTACCTGGCTCGTGGCGTGCCCCC
CCAGAAGCGGTACCTGATCGGCGGCAACTGGAAGGCTAATGGGACCCTGG
CCCAAGCCGCTGGCATTGTGAAGACCCTGAATGGCGGCGGGCCTTTTCCA
TTGGAAGCCGAGGTGGTGATAGCGCCCCCCGCGCACCTGTTGGGATTCGT
CAAGGACAACGTACGCCCCGATGTGGCTGTTTCGGCTCAGAACTCGGCCT
TGACCACTAAAGCCGGGGCTTTTACGGGCGAGCTGCCCGCGGCGCTCTTG
AAGGACTTCGGGTTGAACTGGGCCATTATCGGGCACTCAGAGCGTAGGGA
GGGTTTTGGTGGGCCGGGGGAGACGGACGAAGTGGTGGCGACCAAGACCA
AGGTGGCCGTGGACGCGGGTTTACACGTCATGGCATGTGTGGGGGAGAAA
TTGGAGCAGCGGGAGGCAGGGCAAACGACCGAGGTAGTGTTGAAGCAGCT
GAGCGCGATTGCCTCCAAGTTGACCAAGTCGGACTGGTCCAAGGTGGTGG
TGGCGTACGAGCCGGTGTGGGCCATTGGCACGGGCAAGGTGGCAACACCG
GAACAGGCCCAGGATGTGCATGCGTCCATTCGCGCGTTCTTGACCGAGAA
GATTGGGGCGAGCGCGGCGTCGTTAGTTCGGATTATTTATGGGGGGTCCG
TGAAGGGCTCGTCAGCCCCGGGACTGATTTTGAAGCCGGACATCGACGGG
TTTCTGGTGGGGGGGGCGTCGTTGACGAGTGACTTTATCACGATTATCCA
GGCAGCCAAAAGCTCATAA
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Synonyms
Publications