NO08G01780.1, NO08G01780.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G01780.1
Unique Name	NO08G01780.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2063
Alignment location	chr8:546190..548252 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:546190..548252 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G01780.1 vs.
Match: EWM26683.1 (zinc transporter [Nannochloropsis gaditana])

HSP 1 Score: 434.9 bits (1117), Expect = 3.500e-118
Identity = 280/496 (56.45%), Postives = 339/496 (68.35%), Query Frame = 0

Query:   19 LPVLLLVLPGLVTAVHEAHVCLDHNHARGSSDTACASQNSHQHERPPTSHSSP-PEVASGLWIHKHLPKGEWAKAFGATGIISIFPTLVLPFVPLTHSVNGIISLNEGMHKLLLSFAAGGLLGEVFLHSLPHLLEHHDHFSSS------SSNSTSSRDQYQEHAENEEDAHDDHRHSHAHGSGVRLDEGEVMRICMWILAGFLLFFVSEKVVTVILGD-DGGHSHSDSYRHSHTHSHAAHGKKSKSSAASSEDEEEEEEDVEGEEGEEDFSIDSEGRRRRSPRIRERYSRPERRQIATVAAATAAGGRTNGGIHRRQLSSSSPNKGQQRHVTVATGGEGGLKASGYLNIVVDVLHNLTDGIAIGASFASGQGVGLATTLSVFLHEVPHEIGDFAILVQSGLSVRNAFLMQFFTAIAAFLGTFLGLVAKRQLGLERILLALTTGGFLYVACVSVLPELLAGEGKGRRKGGQAVREVGGVVAGIGLMAWVAMGE-HGH 506
            L V L  L GL  A+H AH    +N       +AC +  SH   R   +H    P +A+  + +  LP GEWAKAFGAT +ISIFPTL+LPF+PL   V+G+ SL+E +H+LLLSFA GGLLGEVFLHSLPHLLE HDHF SS      S  +  + D+ +     EE  H +         GVR DEGE +R+ M +LAGFLLFF+SEKVV ++LG+ DGGH H  ++   HT  H   G  +       E+E E+EE  +GEE E+    DS   RRRSPRIRERYS  ERRQ+   AAA  AGG TNGG   + L+ ++  K   R       G   LK+SGYLN+V+DVLHNLTDG+AIGASFASG GVG+ATT+SVFLHE+PHEIGDFAILVQSGLSV++AFL+QF TA+AAF+GT LGLVAKRQ GLER++LALTTGGFLYVA VSVLPELLA    G+  G Q++REVGGVV GIGLMAWVA+GE H H
Sbjct:    8 LSVFLFALFGLKWAIH-AHPVQGNNDCEAWESSACLA--SHNFGR---NHGFELPFIAANSFSNHTLPAGEWAKAFGATAVISIFPTLILPFIPLVSFVDGVPSLHEDLHRLLLSFATGGLLGEVFLHSLPHLLERHDHFGSSHGHHHHSVGTACTLDKTKAECCREEQEHHEK-------DGVRGDEGEALRVSMHVLAGFLLFFISEKVVKLLLGEEDGGHIHGHNHG-KHTTLHINKGMVNGEIEGEREEEMEQEE--QGEEEEDQDWSDSHKLRRRSPRIRERYSNQERRQMREAAAA--AGG-TNGGHGMKALAPTAKRKDVPRLGGCGRKGTTALKSSGYLNVVIDVLHNLTDGVAIGASFASGHGVGVATTISVFLHEIPHEIGDFAILVQSGLSVQSAFLLQFCTAVAAFIGTLLGLVAKRQEGLERLVLALTTGGFLYVATVSVLPELLA----GKPGGAQSLREVGGVVGGIGLMAWVALGEAHAH 480

The following BLAST results are available for this feature:

BLAST of NO08G01780.1 vs.

BLAST of NO08G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26683.1	3.500e-118	56.45	zinc transporter [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G01780	NO08G01780	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G01780.1	NO08G01780.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G01780.1.cds1	NO08G01780.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:546190..548252-
coding sequence from alignment at chr8:546190..548252-

mRNA sequence

>NO08G01780.1 ID=NO08G01780.1|Name=NO08G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp
AATAGGACGACGGGGTACCCACTGTGTGTCTCCATATTATTTGCCCAAGC
TCAAGCCACGCCCCAGCCAGCGTCATCATCATGTCCTACAGGAGGATGCG
ACCCATGCGGCCCCTCTTGAGCTCGCATGTCCTCCTTCCTGTCCTGCTCT
TGGTGCTACCAGGTTTGGTGACTGCTGTGCACGAAGCGCATGTATGCTTG
GATCATAACCATGCACGAGGGTCCTCTGACACTGCTTGCGCATCTCAGAA
CTCCCACCAACACGAGCGCCCTCCCACTTCACACTCGTCGCCTCCGGAAG
TCGCCTCCGGACTGTGGATCCACAAGCATCTTCCCAAAGGGGAATGGGCG
AAAGCCTTTGGTGCTACCGGTATCATAAGCATCTTTCCCACTCTAGTGCT
TCCCTTTGTCCCCCTCACCCACTCCGTCAATGGCATCATCTCCTTGAATG
AGGGCATGCATAAACTTTTGCTCAGTTTCGCCGCTGGAGGCCTGCTTGGC
GAGGTATTCTTGCATTCCTTGCCGCATTTGCTCGAGCACCACGACCATTT
CAGTAGTAGCAGCAGCAATAGCACAAGTAGTCGCGACCAGTACCAAGAGC
ACGCGGAGAACGAGGAGGACGCGCACGACGACCATAGGCACTCGCATGCA
CACGGCAGCGGCGTGAGATTGGATGAGGGGGAGGTTATGCGGATTTGTAT
GTGGATTTTGGCGGGCTTCCTTCTCTTCTTTGTATCGGAGAAGGTAGTCA
CAGTTATCCTGGGCGATGATGGAGGGCATTCACACAGCGACAGTTACAGA
CACTCACACACTCATTCTCACGCCGCTCATGGCAAAAAATCAAAGTCAAG
CGCTGCATCAAGCGAAGATGAAGAAGAGGAGGAAGAAGACGTAGAGGGAG
AGGAAGGAGAGGAGGACTTCTCAATTGACTCTGAAGGTCGGCGCCGGCGA
AGCCCCCGCATCCGAGAGCGGTACTCACGCCCTGAACGAAGGCAAATAGC
AACAGTAGCAGCAGCAACAGCAGCGGGGGGTCGTACCAACGGCGGAATTC
ACCGGCGACAGCTTTCTTCTTCATCACCGAACAAAGGGCAGCAGCGGCAT
GTGACCGTAGCAACAGGAGGAGAGGGAGGGTTGAAGGCAAGCGGGTACCT
CAACATCGTGGTTGATGTGCTGCACAATCTCACAGACGGCATCGCCATCG
GTGCCTCGTTTGCCTCGGGTCAAGGGGTTGGATTAGCCACCACCCTATCA
GTGTTTCTCCATGAGGTCCCGCACGAGATAGGAGATTTTGCTATTTTGGT
TCAATCTGGTCTGAGTGTACGGAATGCTTTCTTGATGCAATTTTTTACTG
CTATTGCTGCTTTCCTCGGTACATTTTTGGGATTAGTGGCCAAGAGACAG
TTAGGATTGGAGCGGATATTGCTGGCGCTGACGACGGGAGGTTTTTTGTA
TGTGGCGTGTGTGTCGGTGTTGCCGGAGTTGCTGGCAGGGGAAGGGAAGG
GAAGAAGAAAGGGAGGGCAGGCGGTGAGGGAGGTGGGAGGGGTGGTGGCT
GGAATAGGGCTGATGGCTTGGGTGGCGATGGGCGAGCACGGGCATGAACA
TTGATGAGAAGGGAGAGACAGACGAGGAAGAAGGTAGGATGAAGAAAAGG
AAGAGAAGGAGGAGCAGCATTGAGTTGAAGAGAGAGTTCCACGCCCGAGC
CGCGCAGTAGATAGGAGGAAAGACGCCGCTCATTTTGCTTCTTTTCTTGA
GTTGGCCGACATGCCAGTCAGAAAGCGAAAGTGGAGAGTGTTGTTAGTTA
GATTCAGTGGGATTAAAAGCAGCAGAAGCAGTAGAAGTAGAAGATGACGA
AGATAGGAAGAGTGGAGAAATGAAAAGGAACGTGCAATGCAAGCAGGGAT
AATGTACACACATACACACACCTGTACAGGGGAACGAGAGACCGAAAGGC
GGCGGCAACAAGTCTTGTGTGTGATTTAATTCACTTGTAGTTGAAAGACG
AGAAGAAATGAGAGGAGCCCTACACCAACCAAAAAAAGAGCACGGATCAA
GAGCAATGTTGGA

protein sequence of NO08G01780.1

>NO08G01780.1-protein ID=NO08G01780.1-protein|Name=NO08G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MSYRRMRPMRPLLSSHVLLPVLLLVLPGLVTAVHEAHVCLDHNHARGSSD
TACASQNSHQHERPPTSHSSPPEVASGLWIHKHLPKGEWAKAFGATGIIS
IFPTLVLPFVPLTHSVNGIISLNEGMHKLLLSFAAGGLLGEVFLHSLPHL
LEHHDHFSSSSSNSTSSRDQYQEHAENEEDAHDDHRHSHAHGSGVRLDEG
EVMRICMWILAGFLLFFVSEKVVTVILGDDGGHSHSDSYRHSHTHSHAAH
GKKSKSSAASSEDEEEEEEDVEGEEGEEDFSIDSEGRRRRSPRIRERYSR
PERRQIATVAAATAAGGRTNGGIHRRQLSSSSPNKGQQRHVTVATGGEGG
LKASGYLNIVVDVLHNLTDGIAIGASFASGQGVGLATTLSVFLHEVPHEI
GDFAILVQSGLSVRNAFLMQFFTAIAAFLGTFLGLVAKRQLGLERILLAL
TTGGFLYVACVSVLPELLAGEGKGRRKGGQAVREVGGVVAGIGLMAWVAM
GEHGHEH*

mRNA from alignment at chr8:546190..548252-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G01780.1 ID=NO08G01780.1|Name=NO08G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr8:546190..548252- (Nannochloropsis oceanica)
AATAGGACGACGGGGTACCCACTGTGTGTCTCCATATTATTTGCCCAAGC
TCAAGCCACGCCCCAGCCAGCGTCATCATCATGTCCTACAGGAGGATGCG
ACCCATGCGGCCCCTCTTGAGCTCGCATGTCCTCCTTCCTGTCCTGCTCT
TGGTGCTACCAGGTTTGGTGACTGCTGTGCACGAAGCGCATGTATGCTTG
GATCATAACCATGCACGAGGGTCCTCTGACACTGCTTGCGCATCTCAGAA
CTCCCACCAACACGAGCGCCCTCCCACTTCACACTCGTCGCCTCCGGAAG
TCGCCTCCGGACTGTGGATCCACAAGCATCTTCCCAAAGGGGAATGGGCG
AAAGCCTTTGGTGCTACCGGTATCATAAGCATCTTTCCCACTCTAGTGCT
TCCCTTTGTCCCCCTCACCCACTCCGTCAATGGCATCATCTCCTTGAATG
AGGGCATGCATAAACTTTTGCTCAGTTTCGCCGCTGGAGGCCTGCTTGGC
GAGGTATTCTTGCATTCCTTGCCGCATTTGCTCGAGCACCACGACCATTT
CAGTAGTAGCAGCAGCAATAGCACAAGTAGTCGCGACCAGTACCAAGAGC
ACGCGGAGAACGAGGAGGACGCGCACGACGACCATAGGCACTCGCATGCA
CACGGCAGCGGCGTGAGATTGGATGAGGGGGAGGTTATGCGGATTTGTAT
GTGGATTTTGGCGGGCTTCCTTCTCTTCTTTGTATCGGAGAAGGTAGTCA
CAGTTATCCTGGGCGATGATGGAGGGCATTCACACAGCGACAGTTACAGA
CACTCACACACTCATTCTCACGCCGCTCATGGCAAAAAATCAAAGTCAAG
CGCTGCATCAAGCGAAGATGAAGAAGAGGAGGAAGAAGACGTAGAGGGAG
AGGAAGGAGAGGAGGACTTCTCAATTGACTCTGAAGGTCGGCGCCGGCGA
AGCCCCCGCATCCGAGAGCGGTACTCACGCCCTGAACGAAGGCAAATAGC
AACAGTAGCAGCAGCAACAGCAGCGGGGGGTCGTACCAACGGCGGAATTC
ACCGGCGACAGCTTTCTTCTTCATCACCGAACAAAGGGCAGCAGCGGCAT
GTGACCGTAGCAACAGGAGGAGAGGGAGGGTTGAAGGCAAGCGGGTACCT
CAACATCGTGGTTGATGTGCTGCACAATCTCACAGACGGCATCGCCATCG
GTGCCTCGTTTGCCTCGGGTCAAGGGGTTGGATTAGCCACCACCCTATCA
GTGTTTCTCCATGAGGTCCCGCACGAGATAGGAGATTTTGCTATTTTGGT
TCAATCTGGTCTGAGTGTACGGAATGCTTTCTTGATGCAATTTTTTACTG
CTATTGCTGCTTTCCTCGGTACATTTTTGGGATTAGTGGCCAAGAGACAG
TTAGGATTGGAGCGGATATTGCTGGCGCTGACGACGGGAGGTTTTTTGTA
TGTGGCGTGTGTGTCGGTGTTGCCGGAGTTGCTGGCAGGGGAAGGGAAGG
GAAGAAGAAAGGGAGGGCAGGCGGTGAGGGAGGTGGGAGGGGTGGTGGCT
GGAATAGGGCTGATGGCTTGGGTGGCGATGGGCGAGCACGGGCATGAACA
TTGATGAGAAGGGAGAGACAGACGAGGAAGAAGGTAGGATGAAGAAAAGG
AAGAGAAGGAGGAGCAGCATTGAGTTGAAGAGAGAGTTCCACGCCCGAGC
CGCGCAGTAGATAGGAGGAAAGACGCCGCTCATTTTGCTTCTTTTCTTGA
GTTGGCCGACATGCCAGTCAGAAAGCGAAAGTGGAGAGTGTTGTTAGTTA
GATTCAGTGGGATTAAAAGCAGCAGAAGCAGTAGAAGTAGAAGATGACGA
AGATAGGAAGAGTGGAGAAATGAAAAGGAACGTGCAATGCAAGCAGGGAT
AATGTACACACATACACACACCTGTACAGGGGAACGAGAGACCGAAAGGC
GGCGGCAACAAGTCTTGTGTGTGATTTAATTCACTTGTAGTTGAAAGACG
AGAAGAAATGAGAGGAGCCCTACACCAACCAAAAAAAGAGCACGGATCAA
GAGCAATGTTGGA

Coding sequence (CDS) from alignment at chr8:546190..548252-

>NO08G01780.1 ID=NO08G01780.1|Name=NO08G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr8:546190..548252- (Nannochloropsis oceanica)
ATGTCCTACAGGAGGATGCGACCCATGCGGCCCCTCTTGAGCTCGCATGT
CCTCCTTCCTGTCCTGCTCTTGGTGCTACCAGGTTTGGTGACTGCTGTGC
ACGAAGCGCATGTATGCTTGGATCATAACCATGCACGAGGGTCCTCTGAC
ACTGCTTGCGCATCTCAGAACTCCCACCAACACGAGCGCCCTCCCACTTC
ACACTCGTCGCCTCCGGAAGTCGCCTCCGGACTGTGGATCCACAAGCATC
TTCCCAAAGGGGAATGGGCGAAAGCCTTTGGTGCTACCGGTATCATAAGC
ATCTTTCCCACTCTAGTGCTTCCCTTTGTCCCCCTCACCCACTCCGTCAA
TGGCATCATCTCCTTGAATGAGGGCATGCATAAACTTTTGCTCAGTTTCG
CCGCTGGAGGCCTGCTTGGCGAGGTATTCTTGCATTCCTTGCCGCATTTG
CTCGAGCACCACGACCATTTCAGTAGTAGCAGCAGCAATAGCACAAGTAG
TCGCGACCAGTACCAAGAGCACGCGGAGAACGAGGAGGACGCGCACGACG
ACCATAGGCACTCGCATGCACACGGCAGCGGCGTGAGATTGGATGAGGGG
GAGGTTATGCGGATTTGTATGTGGATTTTGGCGGGCTTCCTTCTCTTCTT
TGTATCGGAGAAGGTAGTCACAGTTATCCTGGGCGATGATGGAGGGCATT
CACACAGCGACAGTTACAGACACTCACACACTCATTCTCACGCCGCTCAT
GGCAAAAAATCAAAGTCAAGCGCTGCATCAAGCGAAGATGAAGAAGAGGA
GGAAGAAGACGTAGAGGGAGAGGAAGGAGAGGAGGACTTCTCAATTGACT
CTGAAGGTCGGCGCCGGCGAAGCCCCCGCATCCGAGAGCGGTACTCACGC
CCTGAACGAAGGCAAATAGCAACAGTAGCAGCAGCAACAGCAGCGGGGGG
TCGTACCAACGGCGGAATTCACCGGCGACAGCTTTCTTCTTCATCACCGA
ACAAAGGGCAGCAGCGGCATGTGACCGTAGCAACAGGAGGAGAGGGAGGG
TTGAAGGCAAGCGGGTACCTCAACATCGTGGTTGATGTGCTGCACAATCT
CACAGACGGCATCGCCATCGGTGCCTCGTTTGCCTCGGGTCAAGGGGTTG
GATTAGCCACCACCCTATCAGTGTTTCTCCATGAGGTCCCGCACGAGATA
GGAGATTTTGCTATTTTGGTTCAATCTGGTCTGAGTGTACGGAATGCTTT
CTTGATGCAATTTTTTACTGCTATTGCTGCTTTCCTCGGTACATTTTTGG
GATTAGTGGCCAAGAGACAGTTAGGATTGGAGCGGATATTGCTGGCGCTG
ACGACGGGAGGTTTTTTGTATGTGGCGTGTGTGTCGGTGTTGCCGGAGTT
GCTGGCAGGGGAAGGGAAGGGAAGAAGAAAGGGAGGGCAGGCGGTGAGGG
AGGTGGGAGGGGTGGTGGCTGGAATAGGGCTGATGGCTTGGGTGGCGATG
GGCGAGCACGGGCATGAACATTGA

Synonyms

Publications