NO08G01720.1, NO08G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01720.1
Unique NameNO08G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr8:537918..538850 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:537918..538850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01720.1 vs.
Match: EWM26777.1 (deoxyhypusine hydroxylase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 449.1 bits (1154), Expect = 1.100e-122
Identity = 238/310 (76.77%), Postives = 261/310 (84.19%), Query Frame = 0 
Query:    1 MAPNVAALRDCLVDVQQPIQKRTHAAFVLRTDGGSEAVAAIGEALRNKQDSALLRHELAYVLGQIRDRAACPTLVAVLSDERDDSMVRHEAAEALGAIAEPESVSVLEKYAQDPVPEVADTCRLSLDLIRWHQQQQQQQQQQQRQQEGSLDKSPYLSVDPAPADRQDLSTAELQARLLDPSLPLFTRYRAMFSLRNRNTTEAVAALAEGFRDSSPLFRHEVAYVFGQMQNPASVPALKLVLENEQEHRMVRHEAAEALGAVGGEECETILAKFMQDGEVVVRESCVVALGIADYWVGGGGEGECEGEEVM 311
            MAP+VA LR CL+DV QPIQKRTHAAFVLRTDG SEAV+AIGEALRNKQDSALLRHELAYVLGQI DR ACP L+AVLSDE DDSMVRHEAAEALGAI E E+V VLE + +D VPEVADTCRLSLDLIRW  Q  +     Q + +  LDKSPY+SVDPAPADR D+STAEL+ARLLD SLPLF RYRAMFSLRNRNTTEAVAALA+G +D SPLFRHEVAYVFGQMQNPASVPALK VLE+  EHRMVRHEAAEALGAVGG +CE +LA+F++D EVVVRESC VALGIA+YW      GE    EV+
Sbjct:   30 MAPDVAVLRKCLLDVSQPIQKRTHAAFVLRTDGESEAVSAIGEALRNKQDSALLRHELAYVLGQIGDRKACPNLIAVLSDENDDSMVRHEAAEALGAIGEVEAVPVLETFVRDSVPEVADTCRLSLDLIRWRHQGGEDASLAQEKGQIGLDKSPYMSVDPAPADRVDVSTAELEARLLDTSLPLFARYRAMFSLRNRNTTEAVAALAQGLKDPSPLFRHEVAYVFGQMQNPASVPALKAVLEDGTEHRMVRHEAAEALGAVGGADCEGVLARFVRDEEVVVRESCEVALGIAEYW------GESVAREVV 333
The following BLAST results are available for this feature:
BLAST of NO08G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26777.11.100e-12276.77deoxyhypusine hydroxylase-like protein [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01720NO08G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01720.1NO08G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01720.1.cds1NO08G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01720.1 ID=NO08G01720.1|Name=NO08G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGGCTCCAAACGTGGCGGCTCTTCGCGACTGCCTGGTCGACGTGCAGCA
GCCAATCCAAAAGCGTACCCACGCTGCCTTTGTTCTGCGTACCGATGGAG
GCTCCGAGGCCGTCGCCGCCATTGGTGAGGCCTTGCGGAACAAGCAAGAC
TCTGCCTTGCTCCGACATGAGCTCGCATACGTCCTGGGCCAGATTCGGGA
CCGGGCCGCCTGCCCTACGCTCGTGGCAGTGCTGTCGGACGAACGCGACG
ACTCGATGGTGCGGCACGAGGCAGCCGAAGCACTGGGTGCGATTGCAGAG
CCGGAGTCAGTGTCGGTTCTGGAGAAATACGCCCAAGACCCTGTGCCTGA
GGTGGCCGACACATGCCGTCTGTCCCTCGACCTGATCCGATGGCACCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAAGAGGGATCATTG
GATAAGAGCCCGTATTTGTCCGTGGACCCCGCTCCGGCAGACAGGCAGGA
TTTGAGCACAGCGGAGCTTCAGGCCCGTTTGCTCGACCCTTCATTGCCTC
TCTTTACTCGATACCGTGCCATGTTCTCCTTGCGGAATCGGAATACGACT
GAGGCAGTGGCAGCGCTGGCGGAGGGCTTCAGGGATTCGAGCCCATTGTT
TCGGCATGAGGTTGCGTACGTGTTCGGGCAGATGCAGAACCCAGCATCAG
TCCCTGCACTGAAGTTGGTGTTGGAGAACGAGCAAGAGCATAGGATGGTG
AGGCATGAGGCGGCTGAGGCGCTGGGAGCTGTGGGGGGAGAGGAGTGTGA
GACAATCTTGGCAAAGTTTATGCAGGATGGGGAGGTGGTGGTGAGGGAGA
GTTGTGTGGTTGCCTTGGGGATTGCGGATTACTGGGTGGGGGGAGGGGGG
GAAGGAGAGTGTGAGGGGGAGGAGGTGATGTAG
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protein sequence of NO08G01720.1

>NO08G01720.1-protein ID=NO08G01720.1-protein|Name=NO08G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MAPNVAALRDCLVDVQQPIQKRTHAAFVLRTDGGSEAVAAIGEALRNKQD
SALLRHELAYVLGQIRDRAACPTLVAVLSDERDDSMVRHEAAEALGAIAE
PESVSVLEKYAQDPVPEVADTCRLSLDLIRWHQQQQQQQQQQQRQQEGSL
DKSPYLSVDPAPADRQDLSTAELQARLLDPSLPLFTRYRAMFSLRNRNTT
EAVAALAEGFRDSSPLFRHEVAYVFGQMQNPASVPALKLVLENEQEHRMV
RHEAAEALGAVGGEECETILAKFMQDGEVVVRESCVVALGIADYWVGGGG
EGECEGEEVM*
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mRNA from alignment at chr8:537918..538850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01720.1 ID=NO08G01720.1|Name=NO08G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp|location=Sequence derived from alignment at chr8:537918..538850+ (Nannochloropsis oceanica)
ATGGCTCCAAACGTGGCGGCTCTTCGCGACTGCCTGGTCGACGTGCAGCA
GCCAATCCAAAAGCGTACCCACGCTGCCTTTGTTCTGCGTACCGATGGAG
GCTCCGAGGCCGTCGCCGCCATTGGTGAGGCCTTGCGGAACAAGCAAGAC
TCTGCCTTGCTCCGACATGAGCTCGCATACGTCCTGGGCCAGATTCGGGA
CCGGGCCGCCTGCCCTACGCTCGTGGCAGTGCTGTCGGACGAACGCGACG
ACTCGATGGTGCGGCACGAGGCAGCCGAAGCACTGGGTGCGATTGCAGAG
CCGGAGTCAGTGTCGGTTCTGGAGAAATACGCCCAAGACCCTGTGCCTGA
GGTGGCCGACACATGCCGTCTGTCCCTCGACCTGATCCGATGGCACCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAAGAGGGATCATTG
GATAAGAGCCCGTATTTGTCCGTGGACCCCGCTCCGGCAGACAGGCAGGA
TTTGAGCACAGCGGAGCTTCAGGCCCGTTTGCTCGACCCTTCATTGCCTC
TCTTTACTCGATACCGTGCCATGTTCTCCTTGCGGAATCGGAATACGACT
GAGGCAGTGGCAGCGCTGGCGGAGGGCTTCAGGGATTCGAGCCCATTGTT
TCGGCATGAGGTTGCGTACGTGTTCGGGCAGATGCAGAACCCAGCATCAG
TCCCTGCACTGAAGTTGGTGTTGGAGAACGAGCAAGAGCATAGGATGGTG
AGGCATGAGGCGGCTGAGGCGCTGGGAGCTGTGGGGGGAGAGGAGTGTGA
GACAATCTTGGCAAAGTTTATGCAGGATGGGGAGGTGGTGGTGAGGGAGA
GTTGTGTGGTTGCCTTGGGGATTGCGGATTACTGGGTGGGGGGAGGGGGG
GAAGGAGAGTGTGAGGGGGAGGAGGTGATGTAG
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Coding sequence (CDS) from alignment at chr8:537918..538850+

>NO08G01720.1 ID=NO08G01720.1|Name=NO08G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr8:537918..538850+ (Nannochloropsis oceanica)
ATGGCTCCAAACGTGGCGGCTCTTCGCGACTGCCTGGTCGACGTGCAGCA
GCCAATCCAAAAGCGTACCCACGCTGCCTTTGTTCTGCGTACCGATGGAG
GCTCCGAGGCCGTCGCCGCCATTGGTGAGGCCTTGCGGAACAAGCAAGAC
TCTGCCTTGCTCCGACATGAGCTCGCATACGTCCTGGGCCAGATTCGGGA
CCGGGCCGCCTGCCCTACGCTCGTGGCAGTGCTGTCGGACGAACGCGACG
ACTCGATGGTGCGGCACGAGGCAGCCGAAGCACTGGGTGCGATTGCAGAG
CCGGAGTCAGTGTCGGTTCTGGAGAAATACGCCCAAGACCCTGTGCCTGA
GGTGGCCGACACATGCCGTCTGTCCCTCGACCTGATCCGATGGCACCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAAGAGGGATCATTG
GATAAGAGCCCGTATTTGTCCGTGGACCCCGCTCCGGCAGACAGGCAGGA
TTTGAGCACAGCGGAGCTTCAGGCCCGTTTGCTCGACCCTTCATTGCCTC
TCTTTACTCGATACCGTGCCATGTTCTCCTTGCGGAATCGGAATACGACT
GAGGCAGTGGCAGCGCTGGCGGAGGGCTTCAGGGATTCGAGCCCATTGTT
TCGGCATGAGGTTGCGTACGTGTTCGGGCAGATGCAGAACCCAGCATCAG
TCCCTGCACTGAAGTTGGTGTTGGAGAACGAGCAAGAGCATAGGATGGTG
AGGCATGAGGCGGCTGAGGCGCTGGGAGCTGTGGGGGGAGAGGAGTGTGA
GACAATCTTGGCAAAGTTTATGCAGGATGGGGAGGTGGTGGTGAGGGAGA
GTTGTGTGGTTGCCTTGGGGATTGCGGATTACTGGGTGGGGGGAGGGGGG
GAAGGAGAGTGTGAGGGGGAGGAGGTGATGTAG
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Synonyms
Publications