NO08G01690.1, NO08G01690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01690.1
Unique NameNO08G01690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length618
Alignment locationchr8:531529..532146 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:531529..532146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G01690.1 vs.
Match: EWM26707.1 (hypothetical protein Naga_100001g92 [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 4.300e-51
Identity = 117/196 (59.69%), Postives = 141/196 (71.94%), Query Frame = 0 
Query:    7 ILFVSTAAVQAFQPPSFFLARAR--TRDASMTMRRVTPHGADTSDRRSLIQNQIFLLGGSAAIMSYLPSAVKADSTGKYSTKQTAKKRYLPRVRRGVALFAALGKTLDKPETIQAFCMYVDDNMGTAMALYGSSTRIGELPDPKSRTVDKEVEDFVKEIKALAKGGDVNATYERAKASLIAYLAGTKLEPLGDVAY 201
            +L     AVQAF P SF   +     R  ++T+         T+DRR  I++Q+ L G  A +++  P    ADSTGKYSTKQTAKKRYLPRVR+GVA F ALG+TLD PETI+AF  YV+D++  A+ALYGSSTRIGELPDPKSRTV+KE EDFVKE+ A+AKGGDV A+YE AK +L AYLAGTKLEPL D  Y
Sbjct:    7 LLLAMATAVQAFWP-SFIAVKQSFCRRKEALTLCAFK----GTADRRDHIRSQVALGGLGALLLAANPPLALADSTGKYSTKQTAKKRYLPRVRKGVAKFQALGETLDNPETIKAFNQYVEDSLAAALALYGSSTRIGELPDPKSRTVEKEAEDFVKEVNAMAKGGDVKASYEGAKTALAAYLAGTKLEPLSDPVY 197
The following BLAST results are available for this feature:
BLAST of NO08G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26707.14.300e-5159.69hypothetical protein Naga_100001g92 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01690NO08G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01690.1NO08G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01690.1.cds1NO08G01690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01690.1 ID=NO08G01690.1|Name=NO08G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=618bp
ATGAAGGTTTTGCTTGGTATCCTATTTGTGAGCACGGCTGCTGTCCAGGC
CTTCCAGCCTCCATCGTTCTTCCTTGCACGTGCCCGCACTCGGGACGCTT
CAATGACCATGCGGCGGGTTACCCCCCATGGCGCTGACACATCTGACCGC
CGCAGTTTGATCCAGAACCAGATATTTCTGCTTGGTGGTAGTGCTGCTAT
AATGAGCTATTTGCCCTCGGCTGTCAAAGCGGATTCCACGGGCAAATATA
GCACGAAACAAACGGCCAAGAAGCGCTACTTGCCTCGCGTGCGCAGAGGC
GTGGCTCTGTTCGCCGCCTTGGGCAAGACGCTGGACAAGCCCGAGACAAT
TCAAGCTTTCTGTATGTACGTAGACGACAACATGGGTACTGCCATGGCAT
TGTACGGTTCCTCCACGCGCATCGGTGAGTTGCCTGACCCCAAGTCCCGC
ACGGTCGATAAGGAGGTGGAAGACTTTGTGAAGGAAATCAAGGCGCTTGC
CAAGGGCGGGGATGTCAATGCAACATACGAGCGTGCCAAGGCTAGCCTTA
TTGCTTATCTGGCTGGTACCAAGCTGGAGCCGTTGGGGGACGTGGCATAT
AATACAACCTCTCTATGA
back to top

protein sequence of NO08G01690.1

>NO08G01690.1-protein ID=NO08G01690.1-protein|Name=NO08G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKVLLGILFVSTAAVQAFQPPSFFLARARTRDASMTMRRVTPHGADTSDR
RSLIQNQIFLLGGSAAIMSYLPSAVKADSTGKYSTKQTAKKRYLPRVRRG
VALFAALGKTLDKPETIQAFCMYVDDNMGTAMALYGSSTRIGELPDPKSR
TVDKEVEDFVKEIKALAKGGDVNATYERAKASLIAYLAGTKLEPLGDVAY
NTTSL*
back to top

mRNA from alignment at chr8:531529..532146+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01690.1 ID=NO08G01690.1|Name=NO08G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=618bp|location=Sequence derived from alignment at chr8:531529..532146+ (Nannochloropsis oceanica)
ATGAAGGTTTTGCTTGGTATCCTATTTGTGAGCACGGCTGCTGTCCAGGC
CTTCCAGCCTCCATCGTTCTTCCTTGCACGTGCCCGCACTCGGGACGCTT
CAATGACCATGCGGCGGGTTACCCCCCATGGCGCTGACACATCTGACCGC
CGCAGTTTGATCCAGAACCAGATATTTCTGCTTGGTGGTAGTGCTGCTAT
AATGAGCTATTTGCCCTCGGCTGTCAAAGCGGATTCCACGGGCAAATATA
GCACGAAACAAACGGCCAAGAAGCGCTACTTGCCTCGCGTGCGCAGAGGC
GTGGCTCTGTTCGCCGCCTTGGGCAAGACGCTGGACAAGCCCGAGACAAT
TCAAGCTTTCTGTATGTACGTAGACGACAACATGGGTACTGCCATGGCAT
TGTACGGTTCCTCCACGCGCATCGGTGAGTTGCCTGACCCCAAGTCCCGC
ACGGTCGATAAGGAGGTGGAAGACTTTGTGAAGGAAATCAAGGCGCTTGC
CAAGGGCGGGGATGTCAATGCAACATACGAGCGTGCCAAGGCTAGCCTTA
TTGCTTATCTGGCTGGTACCAAGCTGGAGCCGTTGGGGGACGTGGCATAT
AATACAACCTCTCTATGA
back to top

Coding sequence (CDS) from alignment at chr8:531529..532146+

>NO08G01690.1 ID=NO08G01690.1|Name=NO08G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at chr8:531529..532146+ (Nannochloropsis oceanica)
ATGAAGGTTTTGCTTGGTATCCTATTTGTGAGCACGGCTGCTGTCCAGGC
CTTCCAGCCTCCATCGTTCTTCCTTGCACGTGCCCGCACTCGGGACGCTT
CAATGACCATGCGGCGGGTTACCCCCCATGGCGCTGACACATCTGACCGC
CGCAGTTTGATCCAGAACCAGATATTTCTGCTTGGTGGTAGTGCTGCTAT
AATGAGCTATTTGCCCTCGGCTGTCAAAGCGGATTCCACGGGCAAATATA
GCACGAAACAAACGGCCAAGAAGCGCTACTTGCCTCGCGTGCGCAGAGGC
GTGGCTCTGTTCGCCGCCTTGGGCAAGACGCTGGACAAGCCCGAGACAAT
TCAAGCTTTCTGTATGTACGTAGACGACAACATGGGTACTGCCATGGCAT
TGTACGGTTCCTCCACGCGCATCGGTGAGTTGCCTGACCCCAAGTCCCGC
ACGGTCGATAAGGAGGTGGAAGACTTTGTGAAGGAAATCAAGGCGCTTGC
CAAGGGCGGGGATGTCAATGCAACATACGAGCGTGCCAAGGCTAGCCTTA
TTGCTTATCTGGCTGGTACCAAGCTGGAGCCGTTGGGGGACGTGGCATAT
AATACAACCTCTCTATGA
back to top
Synonyms
Publications