NO08G01680.1, NO08G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01680.1
Unique NameNO08G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length813
Alignment locationchr8:530279..531091 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:530279..531091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01680.1 vs.
Match: EWM26601.1 (protein of unknown function DUF4033 [Nannochloropsis gaditana])

HSP 1 Score: 384.0 bits (985), Expect = 3.800e-103
Identity = 186/246 (75.61%), Postives = 208/246 (84.55%), Query Frame = 0 
Query:   28 PTSSPVPPRHVLS---LQRRGPTDAMPVYDNNWNGRPQDQLLYTFFREKLVQQLGGQDTASKDFAGLIQLIRKLNTHFHATGKAGTQLAAQNILRSLFPSWLPRAFAVMFSKPLPAFSARMNAYITSLTTFWLMGESEIIDVDIDGGGIGQGQGLLVKRCRYLEEAGCASVCVNTCKIPTQNFFCEDMGLPLTMTPDYDDFSCKFSFGLTPPSMEEDDAMKVACFSQCPTAKAASETSPNCHQIDV 271
            P++  + P+ +++   LQRRGP DA P Y      RP D LLY FFR KLVQQLGG DTASKDFAGLI+LIRKLNTHF A+GK GTQ AAQNILRSLFPSWLP AFAVMFSKP PAFSARMNA IT LTT+WLMGESEIIDVD+DGG +G GQGLLVKRCRYLEEAGCAS+CVNTCKIPTQNFFC+DMGLPLTMTPDYDDFSC F+FGLTPP + +D+AM+VACFSQCPTAKA +    NCHQI++
Sbjct:  111 PSARDISPQTLITATRLQRRGPIDAPPEY--GMQRRPFDGLLYAFFRAKLVQQLGGSDTASKDFAGLIELIRKLNTHFPASGKVGTQKAAQNILRSLFPSWLPAAFAVMFSKPFPAFSARMNAIITGLTTYWLMGESEIIDVDVDGGSVGVGQGLLVKRCRYLEEAGCASICVNTCKIPTQNFFCQDMGLPLTMTPDYDDFSCTFAFGLTPPPVFDDEAMRVACFSQCPTAKAPTGELSNCHQIEL 354
The following BLAST results are available for this feature:
BLAST of NO08G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26601.13.800e-10375.61protein of unknown function DUF4033 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01680NO08G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01680.1NO08G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01680.1.cds1NO08G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01680.1 ID=NO08G01680.1|Name=NO08G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
ATGCGACCACCACACTTCCTCCCCGTTGGCATCCTACTCCTCATCACCCT
CCCGACGGTCGCTGCATTTCTTCAAACGCCCCCCACTTCCTCTCCTGTTC
CTCCGCGGCATGTACTGTCCCTGCAACGTCGTGGCCCTACCGATGCCATG
CCCGTCTACGATAACAACTGGAATGGCCGCCCGCAGGACCAGCTTCTCTA
CACTTTTTTTCGAGAAAAGCTCGTGCAGCAACTCGGCGGCCAGGACACGG
CCAGCAAAGACTTTGCGGGGCTCATCCAACTCATTCGGAAATTGAACACA
CATTTCCATGCTACCGGTAAGGCCGGGACGCAGCTCGCAGCGCAGAATAT
CTTGCGTTCTCTTTTTCCTTCCTGGTTGCCAAGAGCGTTTGCCGTCATGT
TTAGCAAACCTCTGCCTGCGTTCAGTGCGCGAATGAATGCGTATATCACG
TCCTTGACTACGTTTTGGTTGATGGGCGAGAGTGAGATCATCGATGTCGA
CATTGACGGAGGCGGGATAGGGCAAGGCCAGGGGCTGCTGGTGAAACGCT
GCCGCTACTTGGAGGAAGCGGGGTGTGCCAGTGTGTGTGTTAATACCTGC
AAGATTCCCACGCAGAATTTTTTCTGTGAAGATATGGGTTTGCCGTTAAC
AATGACCCCTGACTACGACGATTTCTCCTGTAAATTCTCCTTCGGTTTGA
CTCCGCCCTCCATGGAAGAGGATGACGCGATGAAGGTCGCATGCTTTTCG
CAATGTCCGACCGCCAAGGCAGCGAGCGAAACGTCGCCTAATTGCCACCA
GATTGACGTATGA
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protein sequence of NO08G01680.1

>NO08G01680.1-protein ID=NO08G01680.1-protein|Name=NO08G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MRPPHFLPVGILLLITLPTVAAFLQTPPTSSPVPPRHVLSLQRRGPTDAM
PVYDNNWNGRPQDQLLYTFFREKLVQQLGGQDTASKDFAGLIQLIRKLNT
HFHATGKAGTQLAAQNILRSLFPSWLPRAFAVMFSKPLPAFSARMNAYIT
SLTTFWLMGESEIIDVDIDGGGIGQGQGLLVKRCRYLEEAGCASVCVNTC
KIPTQNFFCEDMGLPLTMTPDYDDFSCKFSFGLTPPSMEEDDAMKVACFS
QCPTAKAASETSPNCHQIDV*
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mRNA from alignment at chr8:530279..531091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01680.1 ID=NO08G01680.1|Name=NO08G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=813bp|location=Sequence derived from alignment at chr8:530279..531091- (Nannochloropsis oceanica)
ATGCGACCACCACACTTCCTCCCCGTTGGCATCCTACTCCTCATCACCCT
CCCGACGGTCGCTGCATTTCTTCAAACGCCCCCCACTTCCTCTCCTGTTC
CTCCGCGGCATGTACTGTCCCTGCAACGTCGTGGCCCTACCGATGCCATG
CCCGTCTACGATAACAACTGGAATGGCCGCCCGCAGGACCAGCTTCTCTA
CACTTTTTTTCGAGAAAAGCTCGTGCAGCAACTCGGCGGCCAGGACACGG
CCAGCAAAGACTTTGCGGGGCTCATCCAACTCATTCGGAAATTGAACACA
CATTTCCATGCTACCGGTAAGGCCGGGACGCAGCTCGCAGCGCAGAATAT
CTTGCGTTCTCTTTTTCCTTCCTGGTTGCCAAGAGCGTTTGCCGTCATGT
TTAGCAAACCTCTGCCTGCGTTCAGTGCGCGAATGAATGCGTATATCACG
TCCTTGACTACGTTTTGGTTGATGGGCGAGAGTGAGATCATCGATGTCGA
CATTGACGGAGGCGGGATAGGGCAAGGCCAGGGGCTGCTGGTGAAACGCT
GCCGCTACTTGGAGGAAGCGGGGTGTGCCAGTGTGTGTGTTAATACCTGC
AAGATTCCCACGCAGAATTTTTTCTGTGAAGATATGGGTTTGCCGTTAAC
AATGACCCCTGACTACGACGATTTCTCCTGTAAATTCTCCTTCGGTTTGA
CTCCGCCCTCCATGGAAGAGGATGACGCGATGAAGGTCGCATGCTTTTCG
CAATGTCCGACCGCCAAGGCAGCGAGCGAAACGTCGCCTAATTGCCACCA
GATTGACGTATGA
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Coding sequence (CDS) from alignment at chr8:530279..531091-

>NO08G01680.1 ID=NO08G01680.1|Name=NO08G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at chr8:530279..531091- (Nannochloropsis oceanica)
ATGCGACCACCACACTTCCTCCCCGTTGGCATCCTACTCCTCATCACCCT
CCCGACGGTCGCTGCATTTCTTCAAACGCCCCCCACTTCCTCTCCTGTTC
CTCCGCGGCATGTACTGTCCCTGCAACGTCGTGGCCCTACCGATGCCATG
CCCGTCTACGATAACAACTGGAATGGCCGCCCGCAGGACCAGCTTCTCTA
CACTTTTTTTCGAGAAAAGCTCGTGCAGCAACTCGGCGGCCAGGACACGG
CCAGCAAAGACTTTGCGGGGCTCATCCAACTCATTCGGAAATTGAACACA
CATTTCCATGCTACCGGTAAGGCCGGGACGCAGCTCGCAGCGCAGAATAT
CTTGCGTTCTCTTTTTCCTTCCTGGTTGCCAAGAGCGTTTGCCGTCATGT
TTAGCAAACCTCTGCCTGCGTTCAGTGCGCGAATGAATGCGTATATCACG
TCCTTGACTACGTTTTGGTTGATGGGCGAGAGTGAGATCATCGATGTCGA
CATTGACGGAGGCGGGATAGGGCAAGGCCAGGGGCTGCTGGTGAAACGCT
GCCGCTACTTGGAGGAAGCGGGGTGTGCCAGTGTGTGTGTTAATACCTGC
AAGATTCCCACGCAGAATTTTTTCTGTGAAGATATGGGTTTGCCGTTAAC
AATGACCCCTGACTACGACGATTTCTCCTGTAAATTCTCCTTCGGTTTGA
CTCCGCCCTCCATGGAAGAGGATGACGCGATGAAGGTCGCATGCTTTTCG
CAATGTCCGACCGCCAAGGCAGCGAGCGAAACGTCGCCTAATTGCCACCA
GATTGACGTATGA
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Synonyms
Publications