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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:508094..511321 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01630.1 vs.
Match: EWM26697.1 (bis(5 -nucleosyl)- symmetrical [Nannochloropsis gaditana]) HSP 1 Score: 341.7 bits (875), Expect = 6.000e-90 Identity = 186/299 (62.21%), Postives = 225/299 (75.25%), Query Frame = 0
Query: 428 METTLPLEGSLAPLLNNPLVLTYTLFMSLMLLSLLRYASARNAMAFQTGPLLFKRHGGLSLPLPLSPSSLSSFSSTTTCPPSSYIPCVINETFTPCGTLMPNPVHRILPRSNVKERILIIGDVHGCLEELQSLLIKANYSPQQDTVILVGDLVNKGPLSAETVQYCRENNFLSVRGNHDDSALSAFFRTGKFKGMATLPPAYEYVTKLKEEDVKWLNALPYTWSIPHMGVAVVHAGMLPGRSIGRQTASDMSRMRSVVKRGGEGEKWLEGVDYIRENEEEAAPWAKVWSEEGKE-EGGE 726
M+T+ + +APLLN P +LTYT+ MSLMLLSLLRYA+ R A AFQ P+L KR L LP+ SSL S SS +T P S +P NET TP GT MP VHRIL R+ KER+L++GDVHGCLEELQ+LL+KANY+ +D+V+LVGDLVNKGPLSAETV++CR F SVRGNHDDSAL+A+FR GKF G+++LP AY++V L E DV WL++LPYT SI H+GV VVHAG+LPGR + Q A+DMSRMRSV + G GE GV+YI EN EA PWAKVWS+EGKE EGGE
Sbjct: 1 MDTSTAVSEGIAPLLN-PFLLTYTMVMSLMLLSLLRYANNRPAAAFQAAPILLKR---LGLPISSFSSSLFSASSVSTVPRS--LPSFANETLTPAGTRMPACVHRILTRAEAKERVLVVGDVHGCLEELQALLVKANYTAARDSVVLVGDLVNKGPLSAETVKWCRTQGFYSVRGNHDDSALAAYFRVGKFAGVSSLPQAYDFVAALDEADVAWLDSLPYTLSIEHLGVVVVHAGLLPGRPLQMQQAADMSRMRSVKRAGEGGEGTWVGVEYIPEN-GEAEPWAKVWSQEGKECEGGE 292
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01630.1 ID=NO08G01630.1|Name=NO08G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp ATGGTGTGCGGAGTGCTGGCGCTAGTGTCACATTTGGAGTCCCTCGCTCA AGCTTTCACATTCGCACCTGGAGGGTCGTCCTTAGCCCGTCTTCCAAGCA GGGCCCGCGCCGCTGCCAACCGAGGACTGAACCCTTCCTCTTCCGAGGCC CTGTTGTGGCAGCTGGGAGGCAGTGCCGTCTTACTGTCGCAAACATGGCC GCAGCGGCAGCAGCAGCAGCAGTGGCAACGTCATCGTAGCCTCAGGTTAC ACAATACAATGGGAGTCGGCATCTCAGAATTGGAGATCGTGTCACGCTTG CTCATGGCTACCTTCGCAGGTGCAGCGATTGGGTTTGAGCGGCGATATTC AGAGAGACCCGCAGGGTTGCGGACCATGGCGTTGGTCAGTCTTGGTGCGG CGATCTTCACGATAATTTCCTTGGGTATTCCGGGAGATAAAAGCCGCATG GCTGCCTCGGTAGCGTCAGGGGTGGGGTTCATTGGTGCGGGAGTGATATC TCAAAATGGGTTCGAAGAAACGAGTAAGTCGGGGGGACGAAGAATTCAGC AAGTAAATGGCCTGACCACCGCGACGGCCATCTGGGTGTCAGCGGCGTTA GGAGTGTCCAGTGGCGCCGGGCTGAATTTATTGACTTTCATGGGGGCGGC CTTAGCAGTGTGTGTGTTGCGGGTCGGGAGGCTGACTCGGTTGTTGCGAC TGCGTCGCCGGGATTTTGCGAGCCTGACGGAGAAGACCAAGAAGGCCTTA AATATCAAGCCACCCCCAAGCACACAACAGACATTGCTCGTGGCCGGTGG CGCAGGAGGAGTTGGCACCCTGCAGTCTCCCTCGCAGTCAGACTCGCCCT TCTTGGTGAGGACCAAAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCA GCAGAAGCAGCAGCAGCAGCAGCCGCCGCCGCTTCGTCGAGGAAAATAAA CTGGCAAAATCGAGGAGAGAAGGAGGATGACGTCGGGGAGTTAACGCTAG GCAACCTGGGTTCTTCCAAATTCGGGATTGGTGTGCCACCGCCGAGTGAT TTGTACGAGACGACCAAGGCCGGTGGGCTGGGTTCGCAGCAGATGGATTT TGGGGCGGGGGGCGTATGCGGCGGGGGCTCCCTTCTCACTTTCTTGCCGT CGCCTGACTCCTCCAATCCAGTCTCAAGCGCAACCGCCCACTCACGTTTT ACAGGAAACTCCAAGGACGACCTCTATCAGGGTGGCCGGGCTGGACGTGC CAAGTCTACCAGCGCGCAGCAGCACCAAAGTATGGAAACGACGCTTCCGC TTGAAGGAAGTTTAGCTCCTCTACTCAACAACCCCCTAGTCCTGACGTAC ACCCTGTTCATGAGCTTGATGCTCCTGAGTCTGTTGCGGTACGCCAGCGC CCGCAACGCCATGGCGTTCCAAACAGGTCCCCTCCTCTTCAAGCGCCACG GCGGCCTCAGCCTTCCTCTTCCACTCTCCCCGTCCTCCCTGTCCTCCTTC TCCTCTACCACAACATGCCCCCCTTCCAGCTACATCCCTTGTGTAATAAA CGAGACATTTACACCATGTGGTACCTTAATGCCGAACCCCGTCCATCGCA TCCTTCCTCGAAGCAATGTCAAGGAAAGGATTCTCATCATAGGAGACGTC CACGGCTGCCTCGAAGAACTCCAATCCCTCCTTATCAAGGCCAATTACTC CCCTCAACAAGACACGGTGATACTCGTCGGGGACCTGGTCAACAAAGGGC CGCTCTCAGCAGAAACTGTGCAATATTGTCGAGAGAATAACTTCTTGTCT GTGCGGGGCAACCATGATGATTCTGCGCTGTCGGCATTTTTCCGGACCGG AAAGTTCAAGGGGATGGCGACTTTGCCTCCGGCATACGAATATGTGACAA AACTGAAGGAGGAGGATGTGAAATGGTTAAATGCCTTACCGTACACGTGG TCGATTCCTCACATGGGGGTAGCGGTGGTGCATGCTGGCATGCTACCCGG AAGGAGCATAGGACGACAAACAGCTTCAGATATGAGTAGGATGCGTAGTG TGGTAAAAAGGGGTGGTGAGGGGGAGAAATGGTTGGAAGGCGTAGATTAC ATTCGGGAGAATGAGGAGGAAGCGGCGCCGTGGGCGAAGGTCTGGTCGGA AGAAGGGAAGGAGGAGGGGGGGGAGAAGTGGAGCAGGAGAGGCCGCATTT GTATTTTGGGCATGATGCGAGGAGGGGGATCCAGGTGGAAAGGAAAGCGA CAGGATTGGACACTGGCTGTTGTTATGGTCGGGAGCTGA back to topprotein sequence of NO08G01630.1 >NO08G01630.1-protein ID=NO08G01630.1-protein|Name=NO08G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=763bp MVCGVLALVSHLESLAQAFTFAPGGSSLARLPSRARAAANRGLNPSSSEA LLWQLGGSAVLLSQTWPQRQQQQQWQRHRSLRLHNTMGVGISELEIVSRL LMATFAGAAIGFERRYSERPAGLRTMALVSLGAAIFTIISLGIPGDKSRM AASVASGVGFIGAGVISQNGFEETSKSGGRRIQQVNGLTTATAIWVSAAL GVSSGAGLNLLTFMGAALAVCVLRVGRLTRLLRLRRRDFASLTEKTKKAL NIKPPPSTQQTLLVAGGAGGVGTLQSPSQSDSPFLVRTKAAAAAAAAEAA AEAAAAAAAAASSRKINWQNRGEKEDDVGELTLGNLGSSKFGIGVPPPSD LYETTKAGGLGSQQMDFGAGGVCGGGSLLTFLPSPDSSNPVSSATAHSRF TGNSKDDLYQGGRAGRAKSTSAQQHQSMETTLPLEGSLAPLLNNPLVLTY TLFMSLMLLSLLRYASARNAMAFQTGPLLFKRHGGLSLPLPLSPSSLSSF SSTTTCPPSSYIPCVINETFTPCGTLMPNPVHRILPRSNVKERILIIGDV HGCLEELQSLLIKANYSPQQDTVILVGDLVNKGPLSAETVQYCRENNFLS VRGNHDDSALSAFFRTGKFKGMATLPPAYEYVTKLKEEDVKWLNALPYTW SIPHMGVAVVHAGMLPGRSIGRQTASDMSRMRSVVKRGGEGEKWLEGVDY IRENEEEAAPWAKVWSEEGKEEGGEKWSRRGRICILGMMRGGGSRWKGKR QDWTLAVVMVGS* back to topmRNA from alignment at chr8:508094..511321+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01630.1 ID=NO08G01630.1|Name=NO08G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=3228bp|location=Sequence derived from alignment at chr8:508094..511321+ (Nannochloropsis oceanica) ATGGTGTGCGGAGTGCTGGCGCTAGTGTCACATTTGGAGTCCCTCGCTCA
AGCTTTCACATTCGCACCTGGAGGGTCGTCCTTAGCCCGTCTTCCAAGCA
GGGCCCGCGCCGCTGCCAACCGAGGACTGAACCCTTCCTCTTCCGAGGCC
CTGTTGTGGCAGCTGGGAGGCAGTGCCGTCTTACTGTCGCAAACATGGCC
GCAGCGGCAGCAGCAGCAGCAGTGGCAACGTCATCGTAGCCTCAGGTTAC
ACAATACAATGGGAGTCGGCATCTCAGAATTGGAGATCGTGTCACGCTTG
CTCATGGCTACCTTCGCAGGTGCAGCGATTGGGTTTGAGCGGCGATATTC
AGAGAGACCCGCAGGGTTGCGGACCATGGCGTTGGTCAGTCTTGGTGCGG
CGATCTTCACGATAATTTCCTTGGGTATTCCGGGAGATAAAAGCCGCATG
GCTGCCTCGGTAGCGTCAGGGGTGGGGTTCATTGGTGCGGGAGTGATATC
TCAAAATGGGTTCGAAGAAACGAGTAAGTCGGGGGGACGAAGAATTCAGC
AAGTAAATGGCCTGACCACCGCGACGGCCATCTGGGTGTCAGCGGCGTTA
GGAGTGTCCAGTGGCGCCGGGCTGAATTTATTGACTTTCATGGGGGCGGC
CTTAGCAGTGTGTGTGTTGCGGGTCGGGAGGCTGACTCGGTTGTTGCGAC
TGCGTCGCCGGGATTTTGCGAGCCTGACGGAGAAGACCAAGAAGGCCTTA
AATATCAAGGTGACTTCCTCTTCCACCCCTTCCCCGTCCTCCTTCACACC
TTCTTCGGGTTCTTCATCCTTTACTCCTCGTCAGCCACCCCCAAGCACAC
AACAGACATTGCTCGTGGCCGGTGGCGCAGGAGGAGTTGGCACCCTGCAG
TCTCCCTCGCAGTCAGACTCGCCCTTCTTGGTGAGGACCAAAGCAGCAGC
AGCAGCAGCAGCAGCAGAAGCAGCAGCAGAAGCAGCAGCAGCAGCAGCCG
CCGCCGCTTCGTCGAGGAAAATAAACTGGCAAAATCGAGGAGAGAAGGAG
GATGACGTCGGGGAGTTAACGCTAGGCAACCTGGGTTCTTCCAAATTCGG
GATTGGTGTGCCACCGCCGAGTGATTTGTACGAGACGACCAAGGCCGGTG
GGCTGGGTTCGCAGCAGATGGATTTTGGGGCGGGGTACGGGGGGGAGGGG
ACATGGGGGAAGGGGGAGGGATGATATTTTCGTCGGGAGGAGGTTGTGGC
GAAGGGGAGGGGCCCCCGATCTCGGTAGGTGGAGATTTGGGTGTTTTGGA
AGGTGGTGGTGCCTGAAGATGAAACAGAAAATGACGGCGCTTTTGAGACT
AGATTAGGGTGGGTAGGGAAAGAGTGTACAGGTGTTTTTGTAGGGAAAAA
GACTCACATTTTTGACGTCCGAAACGAGCTATCGCGAACTTAAAAAATCA
ATAAATAAAATTAAATTGCGCCCCAAAAACACAAAATTAAGACACACGAC
AAGTGATGAAAGGCGAGCGCCGCGCGCTGCTCGGACATGTACCAACCATC
GACCTTATAGCATATACCCACACCTCTGACACATAACCTCCGTACCTATG
TCTCCATCTCTGTCTTTCCAACACTCATGTTGCAAATTTTCTCGCTTGTG
TCCAACGGAAAATGGCCGTCTTTTTCTCTTCCTCGTGTACAGGGGCGTAT
GCGGCGGGGGCTCCCTTCTCACTTTCTTGCCGTCGCCTGACTCCTCCAAT
CCAGTCTCAAGCGCAACCGCCCACTCACGTTTTACAGGAAACTCCAAGGA
CGACCTCTATCAGGGTGGCCGGGCTGGACGTGCCAAGTCTACCAGCGCGC
AGCAGCACCAAAGTATGGAAACGACGCTTCCGCTTGAAGGAAGTTTAGCT
CCTCTACTCAACAACCCCCTAGTCCTGACGTACACCCTGTTCATGAGCTT
GATGCTCCTGAGTCTGTTGCGGGTAAGTGATTGGTGAGACTTGTTGCAGA
AGCCTCGAGTCTTTTATTTTCCTCGTATGTCCCGTCCAAGTGCGCCGCCA
CGTCGTCTCGCGGTAAATCGCTCAGTTTCAGTACAGATCGGGGCATGTTT
GTAGAGATGGTCTCTTCGGTGTACACAAAGTTCACGTTCTTACTTGCTGC
TATGCTGTATGCGTCCCTCCCTGTCATCCGTGCCCCTAGTCCCTTCCTGC
CACCCGTGTCCCTAGCCCCTCACCCGCAACGTCTAAGGACCATGCTCCGT
TCTCGCTACTCGAAAGGCTCGTACATCGCCATGTTGACCCTCACAACGTG
TTTCGCACTCGTGCACCTTTATTCACAGTACGCCAGCGCCCGCAACGCCA
TGGCGTTCCAAACAGGTCCCCTCCTCTTCAAGCGCCACGGCGGCCTCAGC
CTTCCTCTTCCACTCTCCCCGTCCTCCCTGTCCTCCTTCTCCTCTACCAC
AACATGCCCCCCTTCCAGCTACATCCCTTGTGTAATAAACGAGACATTTA
CACCATGTGGTACCTTAATGCCGAACCCCGTCCATCGCATCCTTCCTCGA
AGCAATGTCAAGGAAAGGATTCTCATCATAGGAGACGTCCACGGCTGCCT
CGAAGAACTCCAATCCCTCCTTATCAAGGCCAATTACTCCCCTCAACAAG
ACACGGTGATACTCGTCGGGGACCTGGTCAACAAAGGGCCGCTCTCAGCA
GAAACTGTGCAATATTGTCGAGAGAATAACTTCTTGTCTGTGCGGGGCAA
CCATGATGATTCTGCGCTGTCGGCATTTTTCCGGACCGGAAAGTTCAAGG
GGATGGCGACTTTGCCTCCGGCATACGAATATGTGACAAAACTGAAGGAG
GAGGATGTGAAATGGTTAAATGCCTTACCGTACACGTGGTCGATTCCTCA
CATGGGGGTAGCGGTGGTGCATGCTGGCATGCTACCCGGAAGGAGCATAG
GACGACAAACAGCTTCAGATATGAGTAGGATGCGTAGTGTGGTAAAAAGG
GGTGGTGAGGGGGAGAAATGGTTGGAAGGCGTAGATTACATTCGGGAGAA
TGAGGAGGAAGCGGCGCCGTGGGCGAAGGTCTGGTCGGAAGAAGGGAAGG
AGGAGGGGGGGGAGAAGTGGAGCAGGAGAGGCCGCATTTGTATTTTGGGC
ATGATGCGAGGAGGGGGATCCAGGTGGAAAGGAAAGCGACAGGATTGGAC
ACTGGCTGTTGTTATGGTCGGGAGCTGA back to topCoding sequence (CDS) from alignment at chr8:508094..511321+ >NO08G01630.1 ID=NO08G01630.1|Name=NO08G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=2289bp|location=Sequence derived from alignment at chr8:508094..511321+ (Nannochloropsis oceanica) ATGGTGTGCGGAGTGCTGGCGCTAGTGTCACATTTGGAGTCCCTCGCTCA AGCTTTCACATTCGCACCTGGAGGGTCGTCCTTAGCCCGTCTTCCAAGCA GGGCCCGCGCCGCTGCCAACCGAGGACTGAACCCTTCCTCTTCCGAGGCC CTGTTGTGGCAGCTGGGAGGCAGTGCCGTCTTACTGTCGCAAACATGGCC GCAGCGGCAGCAGCAGCAGCAGTGGCAACGTCATCGTAGCCTCAGGTTAC ACAATACAATGGGAGTCGGCATCTCAGAATTGGAGATCGTGTCACGCTTG CTCATGGCTACCTTCGCAGGTGCAGCGATTGGGTTTGAGCGGCGATATTC AGAGAGACCCGCAGGGTTGCGGACCATGGCGTTGGTCAGTCTTGGTGCGG CGATCTTCACGATAATTTCCTTGGGTATTCCGGGAGATAAAAGCCGCATG GCTGCCTCGGTAGCGTCAGGGGTGGGGTTCATTGGTGCGGGAGTGATATC TCAAAATGGGTTCGAAGAAACGAGTAAGTCGGGGGGACGAAGAATTCAGC AAGTAAATGGCCTGACCACCGCGACGGCCATCTGGGTGTCAGCGGCGTTA GGAGTGTCCAGTGGCGCCGGGCTGAATTTATTGACTTTCATGGGGGCGGC CTTAGCAGTGTGTGTGTTGCGGGTCGGGAGGCTGACTCGGTTGTTGCGAC TGCGTCGCCGGGATTTTGCGAGCCTGACGGAGAAGACCAAGAAGGCCTTA AATATCAAGCCACCCCCAAGCACACAACAGACATTGCTCGTGGCCGGTGG CGCAGGAGGAGTTGGCACCCTGCAGTCTCCCTCGCAGTCAGACTCGCCCT TCTTGGTGAGGACCAAAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCA GCAGAAGCAGCAGCAGCAGCAGCCGCCGCCGCTTCGTCGAGGAAAATAAA CTGGCAAAATCGAGGAGAGAAGGAGGATGACGTCGGGGAGTTAACGCTAG GCAACCTGGGTTCTTCCAAATTCGGGATTGGTGTGCCACCGCCGAGTGAT TTGTACGAGACGACCAAGGCCGGTGGGCTGGGTTCGCAGCAGATGGATTT TGGGGCGGGGGGCGTATGCGGCGGGGGCTCCCTTCTCACTTTCTTGCCGT CGCCTGACTCCTCCAATCCAGTCTCAAGCGCAACCGCCCACTCACGTTTT ACAGGAAACTCCAAGGACGACCTCTATCAGGGTGGCCGGGCTGGACGTGC CAAGTCTACCAGCGCGCAGCAGCACCAAAGTATGGAAACGACGCTTCCGC TTGAAGGAAGTTTAGCTCCTCTACTCAACAACCCCCTAGTCCTGACGTAC ACCCTGTTCATGAGCTTGATGCTCCTGAGTCTGTTGCGGTACGCCAGCGC CCGCAACGCCATGGCGTTCCAAACAGGTCCCCTCCTCTTCAAGCGCCACG GCGGCCTCAGCCTTCCTCTTCCACTCTCCCCGTCCTCCCTGTCCTCCTTC TCCTCTACCACAACATGCCCCCCTTCCAGCTACATCCCTTGTGTAATAAA CGAGACATTTACACCATGTGGTACCTTAATGCCGAACCCCGTCCATCGCA TCCTTCCTCGAAGCAATGTCAAGGAAAGGATTCTCATCATAGGAGACGTC CACGGCTGCCTCGAAGAACTCCAATCCCTCCTTATCAAGGCCAATTACTC CCCTCAACAAGACACGGTGATACTCGTCGGGGACCTGGTCAACAAAGGGC CGCTCTCAGCAGAAACTGTGCAATATTGTCGAGAGAATAACTTCTTGTCT GTGCGGGGCAACCATGATGATTCTGCGCTGTCGGCATTTTTCCGGACCGG AAAGTTCAAGGGGATGGCGACTTTGCCTCCGGCATACGAATATGTGACAA AACTGAAGGAGGAGGATGTGAAATGGTTAAATGCCTTACCGTACACGTGG TCGATTCCTCACATGGGGGTAGCGGTGGTGCATGCTGGCATGCTACCCGG AAGGAGCATAGGACGACAAACAGCTTCAGATATGAGTAGGATGCGTAGTG TGGTAAAAAGGGGTGGTGAGGGGGAGAAATGGTTGGAAGGCGTAGATTAC ATTCGGGAGAATGAGGAGGAAGCGGCGCCGTGGGCGAAGGTCTGGTCGGA AGAAGGGAAGGAGGAGGGGGGGGAGAAGTGGAGCAGGAGAGGCCGCATTT GTATTTTGGGCATGATGCGAGGAGGGGGATCCAGGTGGAAAGGAAAGCGA CAGGATTGGACACTGGCTGTTGTTATGGTCGGGAGCTGA back to top
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