NO08G01580.1, NO08G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01580.1
Unique NameNO08G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1830
Alignment locationchr8:497447..499276 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:497447..499276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01580.1 vs.
Match: EWM26673.1 (hypothetical protein Naga_100001g60 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 2.100e-22
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 0 
Query:    5 DLKALTMDFTMIGAFVLAVNGCALYTLQRVIKRIIPRIFWALVILCLPVLGALIFFFIRPRDPMKSLEDDEFEEPEFEIVSPRICTLGDKTSS---PTTPCIIRNLSIPPLKTPEGAFSSSANFMYAPSS 132
            D KAL MD  MI AF+LAVNGCALYTL+RV  +   R+FWA VILC+P+ GALIFFF RPRDP+K   DD   E +   ++P    +  K  S   PTTP ++   +   +K+P+G   S    MYAPSS
Sbjct:    5 DEKALRMDVAMIVAFILAVNGCALYTLKRVRSQPGSRLFWAAVILCVPIGGALIFFFFRPRDPIKYFTDDSIPEKKVGQITPVDVPIDKKLPSMTPPTTPTLLHRFAAHAIKSPDGTLESPC-IMYAPSS 133
The following BLAST results are available for this feature:
BLAST of NO08G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26673.12.100e-2250.00hypothetical protein Naga_100001g60 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01580NO08G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01580.1NO08G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01580.1.cds1NO08G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01580.1 ID=NO08G01580.1|Name=NO08G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp
AAATTTAATTTACACTCGCCGTTGAGAAGACTGTACCGTTTAATAATGGC
ACCAAAGGAAGCAGAAGAAGGTATCACGGGGCGAGAGATGTAGATATACC
CGGTGCACGACGCTCAATGTTGTGGTGCTTTGGGACAATGTCCTGGTCGG
TATAGGAGCCTTGGACGCTTCTAGTGCCATTCACCCCCACGTCTTATCCC
CTGATAATTGGCGCCGCTTCCCATCCCACGCCCTTGTGTCAATACCCGAA
GATAAATGGCCTCTTGTCTTCTGCTCTCTCTCCCGCTCTCTCACACACTC
TATCCCCTTTGATCATGTGACTCCATCCCTATCCGTAACTAAGAATGTCC
CCATTCACCCTTCTGGCGTCCCTGCCGAGTTCCGATCTGTGATCTGGGCT
GTCGACCGCCCTGCTATGCCAGCGCGAGCACTCTTGCACTAACGCGTTGT
GCACCACAAACTCCACAAGTTCCTCAATCACGCAGTGCATGGACAGTTTC
CTCATGGTCTCATCCCCTCTCTATATACACACGACATAGGGTTTGGGGTC
TGGGAGAGGGAGAAAGCGTGTCACGGGGCGAACACCTTCCACTCGTTTGA
GTTGGGTACCCGGGCACAGCTTCGACACGACGACAACAGCAACGACGACA
AAAACTGGTAGTCGCTAGCTACTAAATAAAATAAACCAGAACCATGGGGA
CTCCTGACCTAAAGGCACTGACAATGGACTTCACGATGATTGGGGCCTTC
GTGTTGGCAGTGAACGGATGCGCACTCTACACATTGCAGCGAGTCATCAA
AAGAATTATTCCTCGGATCTTCTGGGCATTAGTGATCTTGTGCTTGCCCG
TCCTGGGTGCATTGATCTTCTTCTTCATCCGGCCTCGGGACCCGATGAAG
TCTCTGGAGGATGACGAATTCGAAGAGCCAGAGTTCGAAATAGTGTCCCC
GAGGATCTGTACTTTGGGAGATAAAACAAGCTCGCCTACCACGCCTTGTA
TCATTCGTAACCTGTCTATACCGCCACTTAAAACCCCTGAGGGCGCCTTC
TCGTCGAGCGCGAACTTCATGTATGCGCCGTCAAGTTAGAGAGGGGAGAA
TGAAAGAGTGGTCGGGAAGGGGAGGGAGTGGGAGTTAGGATGACACTCTG
ACAGTGGATGGTCTTTGTGGTGGCATTAAGGACAAGTAAAGGAGCAAGAA
ATGTTCGTGGGAAGGCGGATAGGTGGACAGGAAGGATGTTGGAAAGGCGG
GTGGGTTGGGGTTTAATGCGGAGGAAGAGCTGATAAGAAAACAAATGTAG
CCCAGGTGGACAAAGAATCCTCCTGCTACTGCTCGTATGGCTGTTGCTCC
GAGTGAGCTGAGGAGAAAAGGTGCTAGAAAGAGTAAGGAAAAGGTAGTGG
AATAGAGAATGAGAGGAAGAGATTAAGAGAGAAAAAGCAGTATGAGATGT
AGAGAGGAGGGAGGGAGGAGACAATAACGGCTCTATAAGTTTGACTCACG
AATATCTTCATGCACAAATATATATACACATGTATATGTATATACAAATG
AAGATGTAAATATACATATAGATATGTATGTGTGTTCGTGGCGTCGGGTG
TATAGAGAGCACTGGACCGCGGACTCTGACTAGTCAATAAGGCTCAGAGA
GCAAGAAGACAAAGAGAGAGAGCAGGAGGGGGAGAGAGAGAATAATAAAC
CAACACGGTTCAGTCATCAAAATCGTTTGTTCCGCAGTTAACCTTAAGAA
CTTTCGTATACAGAATTAAAGAAAAGAAATTACATAATTAGGCCTAGAAG
AGCGTTACACCATACACCACATGTTTTGGT
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protein sequence of NO08G01580.1

>NO08G01580.1-protein ID=NO08G01580.1-protein|Name=NO08G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MGTPDLKALTMDFTMIGAFVLAVNGCALYTLQRVIKRIIPRIFWALVILC
LPVLGALIFFFIRPRDPMKSLEDDEFEEPEFEIVSPRICTLGDKTSSPTT
PCIIRNLSIPPLKTPEGAFSSSANFMYAPSS*
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mRNA from alignment at chr8:497447..499276+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01580.1 ID=NO08G01580.1|Name=NO08G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp|location=Sequence derived from alignment at chr8:497447..499276+ (Nannochloropsis oceanica)
AAATTTAATTTACACTCGCCGTTGAGAAGACTGTACCGTTTAATAATGGC
ACCAAAGGAAGCAGAAGAAGGTATCACGGGGCGAGAGATGTAGATATACC
CGGTGCACGACGCTCAATGTTGTGGTGCTTTGGGACAATGTCCTGGTCGG
TATAGGAGCCTTGGACGCTTCTAGTGCCATTCACCCCCACGTCTTATCCC
CTGATAATTGGCGCCGCTTCCCATCCCACGCCCTTGTGTCAATACCCGAA
GATAAATGGCCTCTTGTCTTCTGCTCTCTCTCCCGCTCTCTCACACACTC
TATCCCCTTTGATCATGTGACTCCATCCCTATCCGTAACTAAGAATGTCC
CCATTCACCCTTCTGGCGTCCCTGCCGAGTTCCGATCTGTGATCTGGGCT
GTCGACCGCCCTGCTATGCCAGCGCGAGCACTCTTGCACTAACGCGTTGT
GCACCACAAACTCCACAAGTTCCTCAATCACGCAGTGCATGGACAGTTTC
CTCATGGTCTCATCCCCTCTCTATATACACACGACATAGGGTTTGGGGTC
TGGGAGAGGGAGAAAGCGTGTCACGGGGCGAACACCTTCCACTCGTTTGA
GTTGGGTACCCGGGCACAGCTTCGACACGACGACAACAGCAACGACGACA
AAAACTGGTAGTCGCTAGCTACTAAATAAAATAAACCAGAACCATGGGGA
CTCCTGACCTAAAGGCACTGACAATGGACTTCACGATGATTGGGGCCTTC
GTGTTGGCAGTGAACGGATGCGCACTCTACACATTGCAGCGAGTCATCAA
AAGAATTATTCCTCGGATCTTCTGGGCATTAGTGATCTTGTGCTTGCCCG
TCCTGGGTGCATTGATCTTCTTCTTCATCCGGCCTCGGGACCCGATGAAG
TCTCTGGAGGATGACGAATTCGAAGAGCCAGAGTTCGAAATAGTGTCCCC
GAGGATCTGTACTTTGGGAGATAAAACAAGCTCGCCTACCACGCCTTGTA
TCATTCGTAACCTGTCTATACCGCCACTTAAAACCCCTGAGGGCGCCTTC
TCGTCGAGCGCGAACTTCATGTATGCGCCGTCAAGTTAGAGAGGGGAGAA
TGAAAGAGTGGTCGGGAAGGGGAGGGAGTGGGAGTTAGGATGACACTCTG
ACAGTGGATGGTCTTTGTGGTGGCATTAAGGACAAGTAAAGGAGCAAGAA
ATGTTCGTGGGAAGGCGGATAGGTGGACAGGAAGGATGTTGGAAAGGCGG
GTGGGTTGGGGTTTAATGCGGAGGAAGAGCTGATAAGAAAACAAATGTAG
CCCAGGTGGACAAAGAATCCTCCTGCTACTGCTCGTATGGCTGTTGCTCC
GAGTGAGCTGAGGAGAAAAGGTGCTAGAAAGAGTAAGGAAAAGGTAGTGG
AATAGAGAATGAGAGGAAGAGATTAAGAGAGAAAAAGCAGTATGAGATGT
AGAGAGGAGGGAGGGAGGAGACAATAACGGCTCTATAAGTTTGACTCACG
AATATCTTCATGCACAAATATATATACACATGTATATGTATATACAAATG
AAGATGTAAATATACATATAGATATGTATGTGTGTTCGTGGCGTCGGGTG
TATAGAGAGCACTGGACCGCGGACTCTGACTAGTCAATAAGGCTCAGAGA
GCAAGAAGACAAAGAGAGAGAGCAGGAGGGGGAGAGAGAGAATAATAAAC
CAACACGGTTCAGTCATCAAAATCGTTTGTTCCGCAGTTAACCTTAAGAA
CTTTCGTATACAGAATTAAAGAAAAGAAATTACATAATTAGGCCTAGAAG
AGCGTTACACCATACACCACATGTTTTGGT
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Coding sequence (CDS) from alignment at chr8:497447..499276+

>NO08G01580.1 ID=NO08G01580.1|Name=NO08G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at chr8:497447..499276+ (Nannochloropsis oceanica)
ATGGGGACTCCTGACCTAAAGGCACTGACAATGGACTTCACGATGATTGG
GGCCTTCGTGTTGGCAGTGAACGGATGCGCACTCTACACATTGCAGCGAG
TCATCAAAAGAATTATTCCTCGGATCTTCTGGGCATTAGTGATCTTGTGC
TTGCCCGTCCTGGGTGCATTGATCTTCTTCTTCATCCGGCCTCGGGACCC
GATGAAGTCTCTGGAGGATGACGAATTCGAAGAGCCAGAGTTCGAAATAG
TGTCCCCGAGGATCTGTACTTTGGGAGATAAAACAAGCTCGCCTACCACG
CCTTGTATCATTCGTAACCTGTCTATACCGCCACTTAAAACCCCTGAGGG
CGCCTTCTCGTCGAGCGCGAACTTCATGTATGCGCCGTCAAGTTAG
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Synonyms
Publications