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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:479206..481599 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01530.3 vs.
Match: GAQ84755.1 (hypothetical protein KFL_002040140 [Klebsormidium nitens]) HSP 1 Score: 143.3 bits (360), Expect = 1.400e-30 Identity = 81/209 (38.76%), Postives = 123/209 (58.85%), Query Frame = 0
Query: 122 EPLNWNRFDVMMPPVEGACEMQRIG---LKDGDGGKFVCGIQDIPDNKDRPCIIYSIGSNHVWDFEEDAYNSTRCTIHTFDCTVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEVMDMLGH-SYVTLLKADIEGFEFDLFNEILTVDEVE-LPEQISFELHYRTIISELPWMPRQKTAGEIALLGTRLYEQGYRVLSREDNV 326
EP RF+ + E++R+G GDGGK +CGI I + C ++S+GSN+ + FE+ +T+C + TFDCTV+ +P+ I DR TFH+IC+G+++ + FM++ +V +LG S L K DIEG E+D+F ++L + LP Q+S ELH+ R+KT ++A+L LY+ GYRV+SREDNV
Sbjct: 120 EPGGHKRFNSVHLWEAKCLEIERMGGVEAVSGDGGKLLCGIDRIMGTQP-DCTVFSLGSNNDFSFEDSIAKTTKCHLQTFDCTVRQPRVPDDISDRVTFHQICLGTAKETKGELEFMSIVDVAALLGQTSPPNLFKMDIEGGEWDVFQDLLRSESAHLLPYQLSLELHW-------CMSGRRKTVADVAMLMHLLYDVGYRVISREDNV 320
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01530.3 ID=NO08G01530.3|Name=NO08G01530.3|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp GCGTTACCGACCGTTTCATCACATAGACATATTGCTCCATGGTGGCAGTC CATCCCAACGTGGGGGATCTATACAACCCCACCCGCACCTCTCCGCTGGT ACGCCGAATAGATATCCGATTTTTTCGTGCTCACCCGGCCAGGGTAAGGG TATCCGGCAGCCATCCCTATGCTCGAACAAGATAGCTCGGCAAATGCTTA GGATAAGCAAGACAACAATACATGGTGCCGTCCATCAACCATGATCTTAC GCCGTATGTACCACCATTTTACTGATGTCCACCCACACAAAAAATCCGAG ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA TTGGCTCCAATCACGTATGGGACTTCGAGGAAGACGCTTACAACTCCACC CGCTGTACTATTCACACCTTTGACTGTACCGTGCAGTCAAACTCCATGCC GGAATACATCCGCGATCGAGCCACATTTCACAAAATCTGTATGGGCAGTT CCGAAAATAGCAGTGAAGGAAAAATATTTATGAATTTAAAGGAGGTAATG GATATGCTGGGTCACTCGTACGTGACGTTACTCAAGGCCGACATCGAGGG CTTCGAGTTCGACCTTTTCAACGAGATCTTGACCGTGGATGAAGTAGAGC TTCCCGAGCAGATCTCGTTCGAACTCCACTACAGAACTATAATTAGTGAA TTGCCCTGGATGCCCCGGCAAAAGACCGCAGGGGAAATCGCCTTGTTGGG CACGCGTTTGTACGAGCAGGGCTATAGAGTGCTGTCTCGCGAGGATAATG TGTACGTACCTGTGTAATCGAGAATGAAGGTGGCTACGTTATGATTGTTT TTCCCCTTAAAGAGTTTTGGTAATGAAAGGATTGTATGGAGTTTGCTTTC TCCATCAACGGAAATGTCTCCGGCATGCTTTCTCCCACCCCCCTTTCTTT CCCTCCCTGGAAATATCAAGGACATGTCTAAGTTTGCCATAATGTAATTG CACCTTCCCCACTGCCTTGTGCACAGGTTGTGTCCGCATTGTACGGAAAT CACCATCGCGCGTTTCCGCTGCCCGAAAGGGCCCCGCAGCCAGACCAAGA AGCTAGCCTTGAGGATGCAGGAACGTCAGAGAGGCGCGGTGTCCTATTTA CAAGAGCAGCAACAGTAAGGATGATGAGGTGAATGAGACAGGGGCTACAG GATGACGGAAAATTACGAAAAGGAAGGGACCGGGCTGTCTGATAAAGTGT TTGCGGTGTGAGGGCGATATGCATGTGGCCGGGGGCTGAAGCGTTGGTGG AATATTACGAAAGGGAAGGGGCCGAAATATCTAATAGAATTTTCTGGTTG GAAGATCACCATCAATAAATGAGGGAGGTGCACGGAGTAGCGATGATATC GGGGGTGGGGAGGACGGGAGAAGGGATGTTGGCGAGTGAGAATTGTTCTT AACAAAGAGCTGGTCTTGGAAACCATATGGAATAAAACGTTGATTAAGAC GTATGTACCTAT back to topprotein sequence of NO08G01530.3 >NO08G01530.3-protein ID=NO08G01530.3-protein|Name=NO08G01530.3|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp MVSYSAVRHVRGLKMAFSRSQALPFMIAGVAVGVCMHSMFKHDSAGGKKT GGLLTSFMDLGEAAQYDDTCHNSWVLTHVNAEMQRIVEEKNAAWYDALPK ILEGAYDKNTLTRAGNGGDPIEPLNWNRFDVMMPPVEGACEMQRIGLKDG DGGKFVCGIQDIPDNKDRPCIIYSIGSNHVWDFEEDAYNSTRCTIHTFDC TVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEVMDMLGHSYVT LLKADIEGFEFDLFNEILTVDEVELPEQISFELHYRTIISELPWMPRQKT AGEIALLGTRLYEQGYRVLSREDNVYVPV* back to topmRNA from alignment at chr8:479206..481599- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01530.3 ID=NO08G01530.3|Name=NO08G01530.3|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp|location=Sequence derived from alignment at chr8:479206..481599- (Nannochloropsis oceanica) GCGTTACCGACCGTTTCATCACATAGACATATTGCTCCATGGTGGCAGTC
CATCCCAACGTGGGGGATCTATACAACCCCACCCGCACCTCTCCGCTGGT
ACGCCGAATAGATATCCGATTTTTTCGTGCTCACCCGGCCAGGGTAAGGG
TATCCGGCAGCCATCCCTATGCTCGAACAAGATAGCTCGGCAAATGCTTA
GGATAAGCAAGACAACAATACATGGTGCCGTCCATCAACCATGATCTTAC
GCCGTATGTACCACCATTTTACTGATGTCCACCCACACAAAAAATCCGAG
ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG
CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG
ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT
TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG
CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT
GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG
TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC
GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA
AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA
ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA
ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG
TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA
TTGGTATGTAACCTGCAAGATGATTTCGGAAGAGTCAGCAACAGTAAGAA
GCTTATCGTTATCTTTGACTTTCTCAGTTTTGAACGGTGGTGTTGTTGGA
CGAGCTTAAAAGACAAGCAACTCGTTCTATCAGTAACACGCCATCGACCC
CCCGGTATCTATTTCTCCGATTTCCTCTATTTAGGCTCCAATCACGTATG
GGACTTCGAGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCT
TTGACTGTACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGA
GCCACATTTCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGG
AAAAATATTTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGT
ACGTGACGTTACTCAAGGTAAGGAGAAAGTGACGGATGGAAGGAGAGAAA
AGAGACAGAACTTTTGCATTTGCATGTGTTTTCTAATGAATGTGCCCACT
CATTCATTATTCCATTTTCTCACCTTCCCTCTCCCTCCCGCCCCCCGCAC
ACACACATCCATTATCAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTT
CAACGAGATCTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGT
TCGAACTCCACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGG
CAAAAGACCGCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCA
GGGCTATAGAGTGCTGTCTCGCGAGGATAATGTGTACGTACCTGTGTAAT
CGAGAATGAAGGTGGCTACGTTATGATTGTTTTTCCCCTTAAAGAGTTTT
GGTAATGAAAGGATTGTATGGAGTTTGCTTTCTCCATCAACGGAAATGTC
TCCGGCATGCTTTCTCCCACCCCCCTTTCTTTCCCTCCCTGGAAATATCA
AGGACATGTCTAAGTTTGCCATAATGTAATTGCACCTTCCCCACTGCCTT
GTGCACAGGTTGTGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCG
CTGCCCGAAAGGGCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGC
AGGAACGTCAGAGAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAA
GGATGATGAGGTGAATGAGACAGGGGCTACAGGATGACGGAAAATTACGA
AAAGGAAGGGACCGGGCTGTCTGATAAAGTGTTTGCGGTGTGAGGGCGAT
ATGCATGTGGCCGGGGGCTGAAGCGTTGGTGGAATATTACGAAAGGGAAG
GGGCCGAAATATCTAATAGAATTTTCTGGTTGGAAGATCACCATCAATAA
ATGAGGGAGGTGCACGGAGTAGCGATGATATCGGGGGTGGGGAGGACGGG
AGAAGGGATGTTGGCGAGTGAGAATTGTTCTTAACAAAGAGCTGGTCTTG
GAAACCATATGGAATAAAACGTTGATTAAGACGTATGTACCTAT back to topCoding sequence (CDS) from alignment at chr8:479206..481599- >NO08G01530.3 ID=NO08G01530.3|Name=NO08G01530.3|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at chr8:479206..481599- (Nannochloropsis oceanica) ATGGTCTCTTACAGTGCCGTCCGACATGTCCGTGGGTTAAAGATGGCATT CTCACGGTCGCAAGCCCTGCCATTTATGATTGCTGGCGTCGCTGTGGGTG TATGCATGCACTCCATGTTCAAGCACGACTCCGCCGGTGGTAAGAAGACT GGTGGCCTTCTGACGTCGTTTATGGACCTTGGCGAGGCTGCGCAATATGA TGACACTTGTCACAATTCCTGGGTGCTGACGCATGTCAATGCCGAAATGC AACGAATTGTGGAGGAAAAGAACGCGGCCTGGTATGATGCCCTGCCCAAA ATACTGGAGGGCGCGTATGACAAAAACACGCTGACTAGGGCAGGAAACGG GGGCGACCCTATTGAACCCTTGAACTGGAACCGCTTCGACGTCATGATGC CCCCGGTAGAGGGTGCGTGCGAAATGCAGAGGATCGGGCTTAAGGACGGG GATGGTGGGAAGTTTGTTTGTGGTATTCAAGACATCCCCGACAATAAGGA TCGGCCTTGCATTATCTACTCCATTGGCTCCAATCACGTATGGGACTTCG AGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCTTTGACTGT ACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGAGCCACATT TCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGGAAAAATAT TTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGTACGTGACG TTACTCAAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTTCAACGAGAT CTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGTTCGAACTCC ACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGGCAAAAGACC GCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCAGGGCTATAG AGTGCTGTCTCGCGAGGATAATGTGTACGTACCTGTGTAA back to top
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