NO08G01530.3, NO08G01530.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01530.3
Unique NameNO08G01530.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2062
Alignment locationchr8:479206..481599 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:479206..481599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G01530.3 vs.
Match: GAQ84755.1 (hypothetical protein KFL_002040140 [Klebsormidium nitens])

HSP 1 Score: 143.3 bits (360), Expect = 1.400e-30
Identity = 81/209 (38.76%), Postives = 123/209 (58.85%), Query Frame = 0
Query:  122 EPLNWNRFDVMMPPVEGACEMQRIG---LKDGDGGKFVCGIQDIPDNKDRPCIIYSIGSNHVWDFEEDAYNSTRCTIHTFDCTVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEVMDMLGH-SYVTLLKADIEGFEFDLFNEILTVDEVE-LPEQISFELHYRTIISELPWMPRQKTAGEIALLGTRLYEQGYRVLSREDNV 326
            EP    RF+ +        E++R+G      GDGGK +CGI  I   +   C ++S+GSN+ + FE+    +T+C + TFDCTV+   +P+ I DR TFH+IC+G+++ +     FM++ +V  +LG  S   L K DIEG E+D+F ++L  +    LP Q+S ELH+           R+KT  ++A+L   LY+ GYRV+SREDNV
Sbjct:  120 EPGGHKRFNSVHLWEAKCLEIERMGGVEAVSGDGGKLLCGIDRIMGTQP-DCTVFSLGSNNDFSFEDSIAKTTKCHLQTFDCTVRQPRVPDDISDRVTFHQICLGTAKETKGELEFMSIVDVAALLGQTSPPNLFKMDIEGGEWDVFQDLLRSESAHLLPYQLSLELHW-------CMSGRRKTVADVAMLMHLLYDVGYRVISREDNV 320          
The following BLAST results are available for this feature:
BLAST of NO08G01530.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAQ84755.11.400e-3038.76hypothetical protein KFL_002040140 [Klebsormidium ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01530NO08G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01530.3NO08G01530.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01530.3.cds1NO08G01530.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01530.3.cds2NO08G01530.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01530.3.cds3NO08G01530.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01530.3 ID=NO08G01530.3|Name=NO08G01530.3|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp
GCGTTACCGACCGTTTCATCACATAGACATATTGCTCCATGGTGGCAGTC
CATCCCAACGTGGGGGATCTATACAACCCCACCCGCACCTCTCCGCTGGT
ACGCCGAATAGATATCCGATTTTTTCGTGCTCACCCGGCCAGGGTAAGGG
TATCCGGCAGCCATCCCTATGCTCGAACAAGATAGCTCGGCAAATGCTTA
GGATAAGCAAGACAACAATACATGGTGCCGTCCATCAACCATGATCTTAC
GCCGTATGTACCACCATTTTACTGATGTCCACCCACACAAAAAATCCGAG
ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG
CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG
ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT
TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG
CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT
GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG
TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC
GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA
AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA
ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA
ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG
TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA
TTGGCTCCAATCACGTATGGGACTTCGAGGAAGACGCTTACAACTCCACC
CGCTGTACTATTCACACCTTTGACTGTACCGTGCAGTCAAACTCCATGCC
GGAATACATCCGCGATCGAGCCACATTTCACAAAATCTGTATGGGCAGTT
CCGAAAATAGCAGTGAAGGAAAAATATTTATGAATTTAAAGGAGGTAATG
GATATGCTGGGTCACTCGTACGTGACGTTACTCAAGGCCGACATCGAGGG
CTTCGAGTTCGACCTTTTCAACGAGATCTTGACCGTGGATGAAGTAGAGC
TTCCCGAGCAGATCTCGTTCGAACTCCACTACAGAACTATAATTAGTGAA
TTGCCCTGGATGCCCCGGCAAAAGACCGCAGGGGAAATCGCCTTGTTGGG
CACGCGTTTGTACGAGCAGGGCTATAGAGTGCTGTCTCGCGAGGATAATG
TGTACGTACCTGTGTAATCGAGAATGAAGGTGGCTACGTTATGATTGTTT
TTCCCCTTAAAGAGTTTTGGTAATGAAAGGATTGTATGGAGTTTGCTTTC
TCCATCAACGGAAATGTCTCCGGCATGCTTTCTCCCACCCCCCTTTCTTT
CCCTCCCTGGAAATATCAAGGACATGTCTAAGTTTGCCATAATGTAATTG
CACCTTCCCCACTGCCTTGTGCACAGGTTGTGTCCGCATTGTACGGAAAT
CACCATCGCGCGTTTCCGCTGCCCGAAAGGGCCCCGCAGCCAGACCAAGA
AGCTAGCCTTGAGGATGCAGGAACGTCAGAGAGGCGCGGTGTCCTATTTA
CAAGAGCAGCAACAGTAAGGATGATGAGGTGAATGAGACAGGGGCTACAG
GATGACGGAAAATTACGAAAAGGAAGGGACCGGGCTGTCTGATAAAGTGT
TTGCGGTGTGAGGGCGATATGCATGTGGCCGGGGGCTGAAGCGTTGGTGG
AATATTACGAAAGGGAAGGGGCCGAAATATCTAATAGAATTTTCTGGTTG
GAAGATCACCATCAATAAATGAGGGAGGTGCACGGAGTAGCGATGATATC
GGGGGTGGGGAGGACGGGAGAAGGGATGTTGGCGAGTGAGAATTGTTCTT
AACAAAGAGCTGGTCTTGGAAACCATATGGAATAAAACGTTGATTAAGAC
GTATGTACCTAT
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protein sequence of NO08G01530.3

>NO08G01530.3-protein ID=NO08G01530.3-protein|Name=NO08G01530.3|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MVSYSAVRHVRGLKMAFSRSQALPFMIAGVAVGVCMHSMFKHDSAGGKKT
GGLLTSFMDLGEAAQYDDTCHNSWVLTHVNAEMQRIVEEKNAAWYDALPK
ILEGAYDKNTLTRAGNGGDPIEPLNWNRFDVMMPPVEGACEMQRIGLKDG
DGGKFVCGIQDIPDNKDRPCIIYSIGSNHVWDFEEDAYNSTRCTIHTFDC
TVQSNSMPEYIRDRATFHKICMGSSENSSEGKIFMNLKEVMDMLGHSYVT
LLKADIEGFEFDLFNEILTVDEVELPEQISFELHYRTIISELPWMPRQKT
AGEIALLGTRLYEQGYRVLSREDNVYVPV*
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mRNA from alignment at chr8:479206..481599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01530.3 ID=NO08G01530.3|Name=NO08G01530.3|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp|location=Sequence derived from alignment at chr8:479206..481599- (Nannochloropsis oceanica)
GCGTTACCGACCGTTTCATCACATAGACATATTGCTCCATGGTGGCAGTC CATCCCAACGTGGGGGATCTATACAACCCCACCCGCACCTCTCCGCTGGT ACGCCGAATAGATATCCGATTTTTTCGTGCTCACCCGGCCAGGGTAAGGG TATCCGGCAGCCATCCCTATGCTCGAACAAGATAGCTCGGCAAATGCTTA GGATAAGCAAGACAACAATACATGGTGCCGTCCATCAACCATGATCTTAC GCCGTATGTACCACCATTTTACTGATGTCCACCCACACAAAAAATCCGAG ACAGACAGATAGGCTGGTATTGAGTCCCAGTTAGGACCGAACACTTTCGG CCCCCTCAAAGACAACACATACAACACATGGTCTCTTACAGTGCCGTCCG ACATGTCCGTGGGTTAAAGATGGCATTCTCACGGTCGCAAGCCCTGCCAT TTATGATTGCTGGCGTCGCTGTGGGTGTATGCATGCACTCCATGTTCAAG CACGACTCCGCCGGTGGTAAGAAGACTGGTGGCCTTCTGACGTCGTTTAT GGACCTTGGCGAGGCTGCGCAATATGATGACACTTGTCACAATTCCTGGG TGCTGACGCATGTCAATGCCGAAATGCAACGAATTGTGGAGGAAAAGAAC GCGGCCTGGTATGATGCCCTGCCCAAAATACTGGAGGGCGCGTATGACAA AAACACGCTGACTAGGGCAGGAAACGGGGGCGACCCTATTGAACCCTTGA ACTGGAACCGCTTCGACGTCATGATGCCCCCGGTAGAGGGTGCGTGCGAA ATGCAGAGGATCGGGCTTAAGGACGGGGATGGTGGGAAGTTTGTTTGTGG TATTCAAGACATCCCCGACAATAAGGATCGGCCTTGCATTATCTACTCCA TTGGTATGTAACCTGCAAGATGATTTCGGAAGAGTCAGCAACAGTAAGAA GCTTATCGTTATCTTTGACTTTCTCAGTTTTGAACGGTGGTGTTGTTGGA CGAGCTTAAAAGACAAGCAACTCGTTCTATCAGTAACACGCCATCGACCC CCCGGTATCTATTTCTCCGATTTCCTCTATTTAGGCTCCAATCACGTATG GGACTTCGAGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCT TTGACTGTACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGA GCCACATTTCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGG AAAAATATTTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGT ACGTGACGTTACTCAAGGTAAGGAGAAAGTGACGGATGGAAGGAGAGAAA AGAGACAGAACTTTTGCATTTGCATGTGTTTTCTAATGAATGTGCCCACT CATTCATTATTCCATTTTCTCACCTTCCCTCTCCCTCCCGCCCCCCGCAC ACACACATCCATTATCAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTT CAACGAGATCTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGT TCGAACTCCACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGG CAAAAGACCGCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCA GGGCTATAGAGTGCTGTCTCGCGAGGATAATGTGTACGTACCTGTGTAAT CGAGAATGAAGGTGGCTACGTTATGATTGTTTTTCCCCTTAAAGAGTTTT GGTAATGAAAGGATTGTATGGAGTTTGCTTTCTCCATCAACGGAAATGTC TCCGGCATGCTTTCTCCCACCCCCCTTTCTTTCCCTCCCTGGAAATATCA AGGACATGTCTAAGTTTGCCATAATGTAATTGCACCTTCCCCACTGCCTT GTGCACAGGTTGTGTCCGCATTGTACGGAAATCACCATCGCGCGTTTCCG CTGCCCGAAAGGGCCCCGCAGCCAGACCAAGAAGCTAGCCTTGAGGATGC AGGAACGTCAGAGAGGCGCGGTGTCCTATTTACAAGAGCAGCAACAGTAA GGATGATGAGGTGAATGAGACAGGGGCTACAGGATGACGGAAAATTACGA AAAGGAAGGGACCGGGCTGTCTGATAAAGTGTTTGCGGTGTGAGGGCGAT ATGCATGTGGCCGGGGGCTGAAGCGTTGGTGGAATATTACGAAAGGGAAG GGGCCGAAATATCTAATAGAATTTTCTGGTTGGAAGATCACCATCAATAA ATGAGGGAGGTGCACGGAGTAGCGATGATATCGGGGGTGGGGAGGACGGG AGAAGGGATGTTGGCGAGTGAGAATTGTTCTTAACAAAGAGCTGGTCTTG GAAACCATATGGAATAAAACGTTGATTAAGACGTATGTACCTAT
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Coding sequence (CDS) from alignment at chr8:479206..481599-

>NO08G01530.3 ID=NO08G01530.3|Name=NO08G01530.3|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at chr8:479206..481599- (Nannochloropsis oceanica)
ATGGTCTCTTACAGTGCCGTCCGACATGTCCGTGGGTTAAAGATGGCATT
CTCACGGTCGCAAGCCCTGCCATTTATGATTGCTGGCGTCGCTGTGGGTG
TATGCATGCACTCCATGTTCAAGCACGACTCCGCCGGTGGTAAGAAGACT
GGTGGCCTTCTGACGTCGTTTATGGACCTTGGCGAGGCTGCGCAATATGA
TGACACTTGTCACAATTCCTGGGTGCTGACGCATGTCAATGCCGAAATGC
AACGAATTGTGGAGGAAAAGAACGCGGCCTGGTATGATGCCCTGCCCAAA
ATACTGGAGGGCGCGTATGACAAAAACACGCTGACTAGGGCAGGAAACGG
GGGCGACCCTATTGAACCCTTGAACTGGAACCGCTTCGACGTCATGATGC
CCCCGGTAGAGGGTGCGTGCGAAATGCAGAGGATCGGGCTTAAGGACGGG
GATGGTGGGAAGTTTGTTTGTGGTATTCAAGACATCCCCGACAATAAGGA
TCGGCCTTGCATTATCTACTCCATTGGCTCCAATCACGTATGGGACTTCG
AGGAAGACGCTTACAACTCCACCCGCTGTACTATTCACACCTTTGACTGT
ACCGTGCAGTCAAACTCCATGCCGGAATACATCCGCGATCGAGCCACATT
TCACAAAATCTGTATGGGCAGTTCCGAAAATAGCAGTGAAGGAAAAATAT
TTATGAATTTAAAGGAGGTAATGGATATGCTGGGTCACTCGTACGTGACG
TTACTCAAGGCCGACATCGAGGGCTTCGAGTTCGACCTTTTCAACGAGAT
CTTGACCGTGGATGAAGTAGAGCTTCCCGAGCAGATCTCGTTCGAACTCC
ACTACAGAACTATAATTAGTGAATTGCCCTGGATGCCCCGGCAAAAGACC
GCAGGGGAAATCGCCTTGTTGGGCACGCGTTTGTACGAGCAGGGCTATAG
AGTGCTGTCTCGCGAGGATAATGTGTACGTACCTGTGTAA
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Synonyms
Publications