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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr8 | genome | chr8:476818..478807 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01520.1 vs.
Match: EWM26654.1 (u3 small nucleolar rna-interacting protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 733.0 bits (1891), Expect = 7.300e-208 Identity = 394/559 (70.48%), Postives = 455/559 (81.40%), Query Frame = 0
Query: 1 MSRRKIFGGTGVRGRGRGGSLGSGERSTTRVGGGPGGAWRASFNLD---QRSSHNNDDEYIDDVVSGSEDELPRKKGRAAETDT---AEMEDRETAAEKRVRLAKQYLAQMEAAMGSEDDGEGSGEGEDDVDGKDALGLLLEKERLKASGSLRRALAGSLSNLAADSIPTQVIKGHKLSPTCVTISRDERIAFTGSKDNAILQYDLETGVRTATLSPHWRGGQGYQAHEKEVLAIAVSSDGRFLAAGGRDKEIRIWDLRERGEGKGLSLKPVKTFAGHRDAVSALCFRADSHALYSGSFDRCLKHWNMDGMVYVETLFGHQAEINGMDAWRRERPVTCGRDRSVRVWKLVDESHMLLKCPQGVGEGGAGRGLVMGGSLDCVAMLSEESYVTGGEDGMLALWNVNKKKPVAIVSNAHGGAGHWISSVATIKGTDLVASGSDDGVVRLWQATTTAQGQGSSLTFTGTMLPAPGFVNGLALGHSGTLLVAACGKEHRLGRWAPQKGAVNGLHILRLPFEEGSKGEGRSGGSSGGESGSEEEDEEDEEEGEEEEYPNMGENED 554
MS+RK+ GG+G +GR RGGS+ S + GGP A + NLD + NDDEYI++ S S +++PRK+GRA + T E ED ETAAE RVRLAKQYLAQMEAA+GSE+D E S + ED GKD++G LLE+ERLKASGSLRRALAG LSN +A ++PT ++KGHKL+PTCVTI+ DER AFTG KDNAIL+YDLE+G RTATLS WRGGQGYQ+HEKEVLA+AVSSDGR+LAAGGRDKEIRIWDLR RG +GL LKPVKTFAGHRDAVSAL FRAD+HALYSGSFDRCLKHWN+DGM+YVETLFGHQAEING+DAWRRERPVTCGRDRSVRVWKL DESHMLL+CPQGVG GGA +GLVMGGSLDC++MLSEE +VTGGEDGMLA+WNVNKKKPVA+V AHGG WISSVA IKGTDLVASGS+DG VRLW+A+TT QGQGSSL TG L PG+VNGLA GHSG++LVAACGKEHRLGRWAP+KGAVNGL+++RLP E GE G + ES E DE++EE G+E++ GE ED
Sbjct: 1 MSKRKVGGGSGTKGRLRGGSVRS------KPSGGPV-AQQERANLDFSLESKRQPNDDEYIEEEGSESGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHD-EDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLPDER--MGEDAVDGGANPES---ESDEDEEEGGDEKDDEKTGEEED 546
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01520.1 ID=NO08G01520.1|Name=NO08G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp
AAAAAATAGCACCATGTCACGAAGAAAAATCTTCGGTGGCACCGGAGTGC
GCGGCCGGGGCCGTGGAGGAAGCCTCGGCAGTGGTGAACGCAGCACTACA
CGCGTTGGTGGTGGGCCAGGCGGTGCTTGGCGCGCCAGCTTTAACTTGGA
CCAGAGAAGCAGCCACAACAATGACGACGAGTACATTGACGATGTTGTCT
CAGGGTCCGAGGACGAGTTGCCGCGTAAAAAGGGCCGTGCGGCTGAGACA
GACACAGCCGAGATGGAGGACCGGGAGACGGCGGCGGAGAAACGCGTGCG
TCTAGCCAAGCAATACCTGGCACAAATGGAGGCAGCCATGGGCAGCGAAG
ACGATGGAGAGGGCTCAGGTGAAGGTGAAGATGACGTTGACGGAAAGGAT
GCGTTGGGCCTTCTGTTGGAAAAGGAACGGCTCAAGGCCTCTGGCTCGCT
CCGACGCGCCCTAGCCGGCAGCCTGAGTAATCTTGCCGCTGACAGCATTC
CTACCCAGGTTATAAAAGGGCATAAGCTTTCACCGACTTGTGTCACGATA
AGTAGAGACGAGCGCATTGCGTTTACGGGGAGCAAGGACAATGCCATTCT
GCAGTATGATTTGGAGACCGGTGTACGGACCGCCACGCTCTCCCCACACT
GGCGGGGTGGCCAGGGATACCAAGCCCACGAGAAGGAAGTGCTGGCAATA
GCGGTGTCATCGGACGGGAGGTTTCTAGCAGCAGGAGGGAGGGATAAGGA
GATTAGAATTTGGGATCTAAGGGAGCGGGGTGAGGGGAAAGGGCTGTCGC
TGAAGCCGGTGAAGACATTTGCGGGCCATCGGGATGCGGTTTCTGCGCTT
TGTTTTCGTGCGGACTCCCATGCGTTGTACTCGGGGTCGTTTGACCGGTG
TTTGAAGCATTGGAACATGGATGGGATGGTGTATGTCGAGACATTGTTTG
GGCATCAGGCGGAGATAAATGGCATGGATGCGTGGAGGAGGGAGCGACCG
GTGACCTGTGGGAGGGATCGGAGCGTGCGGGTGTGGAAATTGGTGGACGA
ATCACACATGTTGCTGAAATGCCCACAGGGTGTGGGAGAGGGAGGGGCGG
GGAGGGGTTTGGTGATGGGGGGGTCTTTGGATTGTGTGGCGATGCTATCG
GAGGAATCTTATGTAACGGGGGGGGAGGACGGAATGCTTGCTTTGTGGAA
TGTGAATAAGAAGAAGCCGGTGGCGATCGTGTCAAATGCACATGGAGGGG
CCGGGCATTGGATAAGTAGTGTTGCGACGATCAAGGGGACGGATTTAGTG
GCTTCAGGGTCGGATGATGGGGTGGTGCGGCTATGGCAGGCGACGACAAC
AGCTCAAGGGCAGGGGTCATCTTTGACATTCACAGGCACGATGTTGCCGG
CTCCGGGGTTTGTGAATGGCTTGGCGCTTGGTCATTCGGGAACATTGTTG
GTAGCGGCGTGTGGGAAAGAGCATCGCTTGGGAAGGTGGGCGCCGCAGAA
AGGAGCGGTAAATGGACTGCATATCCTGAGGTTGCCATTTGAGGAGGGGA
GTAAGGGAGAGGGGCGTAGTGGTGGTAGTAGTGGTGGTGAGAGTGGAAGC
GAAGAGGAGGATGAAGAGGATGAGGAGGAAGGGGAGGAGGAGGAGTATCC
TAATATGGGGGAGAACGAGGATGGAGAGGGAGTGGAAGAGGAGGAAGGGG
AGGAGGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGA
CGACGATGACGACGAGTGAACAAATCCATTCCAAATCCAATATTCCCCCC
CTTCTCAATCTTGTAAAGAGGTCCCGAAAACTTACAAAACGTAAATGCTC
GCGTCAAGTCTAGAGCATAATCTGAAAAAGAAGTAGATCAGAGAATGCGT
CAGCAAAGCATATTTTTTACAAGTAAGCGAAGCATGCTCA back to topprotein sequence of NO08G01520.1 >NO08G01520.1-protein ID=NO08G01520.1-protein|Name=NO08G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MSRRKIFGGTGVRGRGRGGSLGSGERSTTRVGGGPGGAWRASFNLDQRSS
HNNDDEYIDDVVSGSEDELPRKKGRAAETDTAEMEDRETAAEKRVRLAKQ
YLAQMEAAMGSEDDGEGSGEGEDDVDGKDALGLLLEKERLKASGSLRRAL
AGSLSNLAADSIPTQVIKGHKLSPTCVTISRDERIAFTGSKDNAILQYDL
ETGVRTATLSPHWRGGQGYQAHEKEVLAIAVSSDGRFLAAGGRDKEIRIW
DLRERGEGKGLSLKPVKTFAGHRDAVSALCFRADSHALYSGSFDRCLKHW
NMDGMVYVETLFGHQAEINGMDAWRRERPVTCGRDRSVRVWKLVDESHML
LKCPQGVGEGGAGRGLVMGGSLDCVAMLSEESYVTGGEDGMLALWNVNKK
KPVAIVSNAHGGAGHWISSVATIKGTDLVASGSDDGVVRLWQATTTAQGQ
GSSLTFTGTMLPAPGFVNGLALGHSGTLLVAACGKEHRLGRWAPQKGAVN
GLHILRLPFEEGSKGEGRSGGSSGGESGSEEEDEEDEEEGEEEEYPNMGE
NEDGEGVEEEEGEEEEGEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDD
E* back to topmRNA from alignment at chr8:476818..478807- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01520.1 ID=NO08G01520.1|Name=NO08G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at chr8:476818..478807- (Nannochloropsis oceanica)
AAAAAATAGCACCATGTCACGAAGAAAAATCTTCGGTGGCACCGGAGTGC
GCGGCCGGGGCCGTGGAGGAAGCCTCGGCAGTGGTGAACGCAGCACTACA
CGCGTTGGTGGTGGGCCAGGCGGTGCTTGGCGCGCCAGCTTTAACTTGGA
CCAGAGAAGCAGCCACAACAATGACGACGAGTACATTGACGATGTTGTCT
CAGGGTCCGAGGACGAGTTGCCGCGTAAAAAGGGCCGTGCGGCTGAGACA
GACACAGCCGAGATGGAGGACCGGGAGACGGCGGCGGAGAAACGCGTGCG
TCTAGCCAAGCAATACCTGGCACAAATGGAGGCAGCCATGGGCAGCGAAG
ACGATGGAGAGGGCTCAGGTGAAGGTGAAGATGACGTTGACGGAAAGGAT
GCGTTGGGCCTTCTGTTGGAAAAGGAACGGCTCAAGGCCTCTGGCTCGCT
CCGACGCGCCCTAGCCGGCAGCCTGAGTAATCTTGCCGCTGACAGCATTC
CTACCCAGGTTATAAAAGGGCATAAGCTTTCACCGACTTGTGTCACGATA
AGTAGAGACGAGCGCATTGCGTTTACGGGGAGCAAGGACAATGCCATTCT
GCAGTATGATTTGGAGACCGGTGTACGGACCGCCACGCTCTCCCCACACT
GGCGGGGTGGCCAGGGATACCAAGCCCACGAGAAGGAAGTGCTGGCAATA
GCGGTGTCATCGGACGGGAGGTTTCTAGCAGCAGGAGGGAGGGATAAGGA
GATTAGAATTTGGGATCTAAGGGAGCGGGGTGAGGGGAAAGGGCTGTCGC
TGAAGCCGGTGAAGACATTTGCGGGCCATCGGGATGCGGTTTCTGCGCTT
TGTTTTCGTGCGGACTCCCATGCGTTGTACTCGGGGTCGTTTGACCGGTG
TTTGAAGCATTGGAACATGGATGGGATGGTGTATGTCGAGACATTGTTTG
GGCATCAGGCGGAGATAAATGGCATGGATGCGTGGAGGAGGGAGCGACCG
GTGACCTGTGGGAGGGATCGGAGCGTGCGGGTGTGGAAATTGGTGGACGA
ATCACACATGTTGCTGAAATGCCCACAGGGTGTGGGAGAGGGAGGGGCGG
GGAGGGGTTTGGTGATGGGGGGGTCTTTGGATTGTGTGGCGATGCTATCG
GAGGAATCTTATGTAACGGGGGGGGAGGACGGAATGCTTGCTTTGTGGAA
TGTGAATAAGAAGAAGCCGGTGGCGATCGTGTCAAATGCACATGGAGGGG
CCGGGCATTGGATAAGTAGTGTTGCGACGATCAAGGGGACGGATTTAGTG
GCTTCAGGGTCGGATGATGGGGTGGTGCGGCTATGGCAGGCGACGACAAC
AGCTCAAGGGCAGGGGTCATCTTTGACATTCACAGGCACGATGTTGCCGG
CTCCGGGGTTTGTGAATGGCTTGGCGCTTGGTCATTCGGGAACATTGTTG
GTAGCGGCGTGTGGGAAAGAGCATCGCTTGGGAAGGTGGGCGCCGCAGAA
AGGAGCGGTAAATGGACTGCATATCCTGAGGTTGCCATTTGAGGAGGGGA
GTAAGGGAGAGGGGCGTAGTGGTGGTAGTAGTGGTGGTGAGAGTGGAAGC
GAAGAGGAGGATGAAGAGGATGAGGAGGAAGGGGAGGAGGAGGAGTATCC
TAATATGGGGGAGAACGAGGATGGAGAGGGAGTGGAAGAGGAGGAAGGGG
AGGAGGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGA
CGACGATGACGACGAGTGAACAAATCCATTCCAAATCCAATATTCCCCCC
CTTCTCAATCTTGTAAAGAGGTCCCGAAAACTTACAAAACGTAAATGCTC
GCGTCAAGTCTAGAGCATAATCTGAAAAAGAAGTAGATCAGAGAATGCGT
CAGCAAAGCATATTTTTTACAAGTAAGCGAAGCATGCTCA back to topCoding sequence (CDS) from alignment at chr8:476818..478807- >NO08G01520.1 ID=NO08G01520.1|Name=NO08G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr8:476818..478807- (Nannochloropsis oceanica)
ATGTCACGAAGAAAAATCTTCGGTGGCACCGGAGTGCGCGGCCGGGGCCG
TGGAGGAAGCCTCGGCAGTGGTGAACGCAGCACTACACGCGTTGGTGGTG
GGCCAGGCGGTGCTTGGCGCGCCAGCTTTAACTTGGACCAGAGAAGCAGC
CACAACAATGACGACGAGTACATTGACGATGTTGTCTCAGGGTCCGAGGA
CGAGTTGCCGCGTAAAAAGGGCCGTGCGGCTGAGACAGACACAGCCGAGA
TGGAGGACCGGGAGACGGCGGCGGAGAAACGCGTGCGTCTAGCCAAGCAA
TACCTGGCACAAATGGAGGCAGCCATGGGCAGCGAAGACGATGGAGAGGG
CTCAGGTGAAGGTGAAGATGACGTTGACGGAAAGGATGCGTTGGGCCTTC
TGTTGGAAAAGGAACGGCTCAAGGCCTCTGGCTCGCTCCGACGCGCCCTA
GCCGGCAGCCTGAGTAATCTTGCCGCTGACAGCATTCCTACCCAGGTTAT
AAAAGGGCATAAGCTTTCACCGACTTGTGTCACGATAAGTAGAGACGAGC
GCATTGCGTTTACGGGGAGCAAGGACAATGCCATTCTGCAGTATGATTTG
GAGACCGGTGTACGGACCGCCACGCTCTCCCCACACTGGCGGGGTGGCCA
GGGATACCAAGCCCACGAGAAGGAAGTGCTGGCAATAGCGGTGTCATCGG
ACGGGAGGTTTCTAGCAGCAGGAGGGAGGGATAAGGAGATTAGAATTTGG
GATCTAAGGGAGCGGGGTGAGGGGAAAGGGCTGTCGCTGAAGCCGGTGAA
GACATTTGCGGGCCATCGGGATGCGGTTTCTGCGCTTTGTTTTCGTGCGG
ACTCCCATGCGTTGTACTCGGGGTCGTTTGACCGGTGTTTGAAGCATTGG
AACATGGATGGGATGGTGTATGTCGAGACATTGTTTGGGCATCAGGCGGA
GATAAATGGCATGGATGCGTGGAGGAGGGAGCGACCGGTGACCTGTGGGA
GGGATCGGAGCGTGCGGGTGTGGAAATTGGTGGACGAATCACACATGTTG
CTGAAATGCCCACAGGGTGTGGGAGAGGGAGGGGCGGGGAGGGGTTTGGT
GATGGGGGGGTCTTTGGATTGTGTGGCGATGCTATCGGAGGAATCTTATG
TAACGGGGGGGGAGGACGGAATGCTTGCTTTGTGGAATGTGAATAAGAAG
AAGCCGGTGGCGATCGTGTCAAATGCACATGGAGGGGCCGGGCATTGGAT
AAGTAGTGTTGCGACGATCAAGGGGACGGATTTAGTGGCTTCAGGGTCGG
ATGATGGGGTGGTGCGGCTATGGCAGGCGACGACAACAGCTCAAGGGCAG
GGGTCATCTTTGACATTCACAGGCACGATGTTGCCGGCTCCGGGGTTTGT
GAATGGCTTGGCGCTTGGTCATTCGGGAACATTGTTGGTAGCGGCGTGTG
GGAAAGAGCATCGCTTGGGAAGGTGGGCGCCGCAGAAAGGAGCGGTAAAT
GGACTGCATATCCTGAGGTTGCCATTTGAGGAGGGGAGTAAGGGAGAGGG
GCGTAGTGGTGGTAGTAGTGGTGGTGAGAGTGGAAGCGAAGAGGAGGATG
AAGAGGATGAGGAGGAAGGGGAGGAGGAGGAGTATCCTAATATGGGGGAG
AACGAGGATGGAGAGGGAGTGGAAGAGGAGGAAGGGGAGGAGGAGGAAGG
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACGACGATGACGAC
GAGTGA back to top
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