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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:476818..478807 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01520.1 vs.
Match: EWM26654.1 (u3 small nucleolar rna-interacting protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 733.0 bits (1891), Expect = 7.300e-208 Identity = 394/559 (70.48%), Postives = 455/559 (81.40%), Query Frame = 0
Query: 1 MSRRKIFGGTGVRGRGRGGSLGSGERSTTRVGGGPGGAWRASFNLD---QRSSHNNDDEYIDDVVSGSEDELPRKKGRAAETDT---AEMEDRETAAEKRVRLAKQYLAQMEAAMGSEDDGEGSGEGEDDVDGKDALGLLLEKERLKASGSLRRALAGSLSNLAADSIPTQVIKGHKLSPTCVTISRDERIAFTGSKDNAILQYDLETGVRTATLSPHWRGGQGYQAHEKEVLAIAVSSDGRFLAAGGRDKEIRIWDLRERGEGKGLSLKPVKTFAGHRDAVSALCFRADSHALYSGSFDRCLKHWNMDGMVYVETLFGHQAEINGMDAWRRERPVTCGRDRSVRVWKLVDESHMLLKCPQGVGEGGAGRGLVMGGSLDCVAMLSEESYVTGGEDGMLALWNVNKKKPVAIVSNAHGGAGHWISSVATIKGTDLVASGSDDGVVRLWQATTTAQGQGSSLTFTGTMLPAPGFVNGLALGHSGTLLVAACGKEHRLGRWAPQKGAVNGLHILRLPFEEGSKGEGRSGGSSGGESGSEEEDEEDEEEGEEEEYPNMGENED 554
MS+RK+ GG+G +GR RGGS+ S + GGP A + NLD + NDDEYI++ S S +++PRK+GRA + T E ED ETAAE RVRLAKQYLAQMEAA+GSE+D E S + ED GKD++G LLE+ERLKASGSLRRALAG LSN +A ++PT ++KGHKL+PTCVTI+ DER AFTG KDNAIL+YDLE+G RTATLS WRGGQGYQ+HEKEVLA+AVSSDGR+LAAGGRDKEIRIWDLR RG +GL LKPVKTFAGHRDAVSAL FRAD+HALYSGSFDRCLKHWN+DGM+YVETLFGHQAEING+DAWRRERPVTCGRDRSVRVWKL DESHMLL+CPQGVG GGA +GLVMGGSLDC++MLSEE +VTGGEDGMLA+WNVNKKKPVA+V AHGG WISSVA IKGTDLVASGS+DG VRLW+A+TT QGQGSSL TG L PG+VNGLA GHSG++LVAACGKEHRLGRWAP+KGAVNGL+++RLP E GE G + ES E DE++EE G+E++ GE ED
Sbjct: 1 MSKRKVGGGSGTKGRLRGGSVRS------KPSGGPV-AQQERANLDFSLESKRQPNDDEYIEEEGSESGEDVPRKRGRATQQGTDGAMEEEDDETAAEMRVRLAKQYLAQMEAALGSENDEEESHD-EDTDRGKDSMGALLERERLKASGSLRRALAGRLSNFSAATVPTHILKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQGYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGHRDAVSALAFRADAHALYSGSFDRCLKHWNLDGMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHGGNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLPDER--MGEDAVDGGANPES---ESDEDEEEGGDEKDDEKTGEEED 546
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01520.1 ID=NO08G01520.1|Name=NO08G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp AAAAAATAGCACCATGTCACGAAGAAAAATCTTCGGTGGCACCGGAGTGC GCGGCCGGGGCCGTGGAGGAAGCCTCGGCAGTGGTGAACGCAGCACTACA CGCGTTGGTGGTGGGCCAGGCGGTGCTTGGCGCGCCAGCTTTAACTTGGA CCAGAGAAGCAGCCACAACAATGACGACGAGTACATTGACGATGTTGTCT CAGGGTCCGAGGACGAGTTGCCGCGTAAAAAGGGCCGTGCGGCTGAGACA GACACAGCCGAGATGGAGGACCGGGAGACGGCGGCGGAGAAACGCGTGCG TCTAGCCAAGCAATACCTGGCACAAATGGAGGCAGCCATGGGCAGCGAAG ACGATGGAGAGGGCTCAGGTGAAGGTGAAGATGACGTTGACGGAAAGGAT GCGTTGGGCCTTCTGTTGGAAAAGGAACGGCTCAAGGCCTCTGGCTCGCT CCGACGCGCCCTAGCCGGCAGCCTGAGTAATCTTGCCGCTGACAGCATTC CTACCCAGGTTATAAAAGGGCATAAGCTTTCACCGACTTGTGTCACGATA AGTAGAGACGAGCGCATTGCGTTTACGGGGAGCAAGGACAATGCCATTCT GCAGTATGATTTGGAGACCGGTGTACGGACCGCCACGCTCTCCCCACACT GGCGGGGTGGCCAGGGATACCAAGCCCACGAGAAGGAAGTGCTGGCAATA GCGGTGTCATCGGACGGGAGGTTTCTAGCAGCAGGAGGGAGGGATAAGGA GATTAGAATTTGGGATCTAAGGGAGCGGGGTGAGGGGAAAGGGCTGTCGC TGAAGCCGGTGAAGACATTTGCGGGCCATCGGGATGCGGTTTCTGCGCTT TGTTTTCGTGCGGACTCCCATGCGTTGTACTCGGGGTCGTTTGACCGGTG TTTGAAGCATTGGAACATGGATGGGATGGTGTATGTCGAGACATTGTTTG GGCATCAGGCGGAGATAAATGGCATGGATGCGTGGAGGAGGGAGCGACCG GTGACCTGTGGGAGGGATCGGAGCGTGCGGGTGTGGAAATTGGTGGACGA ATCACACATGTTGCTGAAATGCCCACAGGGTGTGGGAGAGGGAGGGGCGG GGAGGGGTTTGGTGATGGGGGGGTCTTTGGATTGTGTGGCGATGCTATCG GAGGAATCTTATGTAACGGGGGGGGAGGACGGAATGCTTGCTTTGTGGAA TGTGAATAAGAAGAAGCCGGTGGCGATCGTGTCAAATGCACATGGAGGGG CCGGGCATTGGATAAGTAGTGTTGCGACGATCAAGGGGACGGATTTAGTG GCTTCAGGGTCGGATGATGGGGTGGTGCGGCTATGGCAGGCGACGACAAC AGCTCAAGGGCAGGGGTCATCTTTGACATTCACAGGCACGATGTTGCCGG CTCCGGGGTTTGTGAATGGCTTGGCGCTTGGTCATTCGGGAACATTGTTG GTAGCGGCGTGTGGGAAAGAGCATCGCTTGGGAAGGTGGGCGCCGCAGAA AGGAGCGGTAAATGGACTGCATATCCTGAGGTTGCCATTTGAGGAGGGGA GTAAGGGAGAGGGGCGTAGTGGTGGTAGTAGTGGTGGTGAGAGTGGAAGC GAAGAGGAGGATGAAGAGGATGAGGAGGAAGGGGAGGAGGAGGAGTATCC TAATATGGGGGAGAACGAGGATGGAGAGGGAGTGGAAGAGGAGGAAGGGG AGGAGGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGA CGACGATGACGACGAGTGAACAAATCCATTCCAAATCCAATATTCCCCCC CTTCTCAATCTTGTAAAGAGGTCCCGAAAACTTACAAAACGTAAATGCTC GCGTCAAGTCTAGAGCATAATCTGAAAAAGAAGTAGATCAGAGAATGCGT CAGCAAAGCATATTTTTTACAAGTAAGCGAAGCATGCTCA back to topprotein sequence of NO08G01520.1 >NO08G01520.1-protein ID=NO08G01520.1-protein|Name=NO08G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp MSRRKIFGGTGVRGRGRGGSLGSGERSTTRVGGGPGGAWRASFNLDQRSS HNNDDEYIDDVVSGSEDELPRKKGRAAETDTAEMEDRETAAEKRVRLAKQ YLAQMEAAMGSEDDGEGSGEGEDDVDGKDALGLLLEKERLKASGSLRRAL AGSLSNLAADSIPTQVIKGHKLSPTCVTISRDERIAFTGSKDNAILQYDL ETGVRTATLSPHWRGGQGYQAHEKEVLAIAVSSDGRFLAAGGRDKEIRIW DLRERGEGKGLSLKPVKTFAGHRDAVSALCFRADSHALYSGSFDRCLKHW NMDGMVYVETLFGHQAEINGMDAWRRERPVTCGRDRSVRVWKLVDESHML LKCPQGVGEGGAGRGLVMGGSLDCVAMLSEESYVTGGEDGMLALWNVNKK KPVAIVSNAHGGAGHWISSVATIKGTDLVASGSDDGVVRLWQATTTAQGQ GSSLTFTGTMLPAPGFVNGLALGHSGTLLVAACGKEHRLGRWAPQKGAVN GLHILRLPFEEGSKGEGRSGGSSGGESGSEEEDEEDEEEGEEEEYPNMGE NEDGEGVEEEEGEEEEGEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDD E* back to topmRNA from alignment at chr8:476818..478807- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01520.1 ID=NO08G01520.1|Name=NO08G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at chr8:476818..478807- (Nannochloropsis oceanica) AAAAAATAGCACCATGTCACGAAGAAAAATCTTCGGTGGCACCGGAGTGC
GCGGCCGGGGCCGTGGAGGAAGCCTCGGCAGTGGTGAACGCAGCACTACA
CGCGTTGGTGGTGGGCCAGGCGGTGCTTGGCGCGCCAGCTTTAACTTGGA
CCAGAGAAGCAGCCACAACAATGACGACGAGTACATTGACGATGTTGTCT
CAGGGTCCGAGGACGAGTTGCCGCGTAAAAAGGGCCGTGCGGCTGAGACA
GACACAGCCGAGATGGAGGACCGGGAGACGGCGGCGGAGAAACGCGTGCG
TCTAGCCAAGCAATACCTGGCACAAATGGAGGCAGCCATGGGCAGCGAAG
ACGATGGAGAGGGCTCAGGTGAAGGTGAAGATGACGTTGACGGAAAGGAT
GCGTTGGGCCTTCTGTTGGAAAAGGAACGGCTCAAGGCCTCTGGCTCGCT
CCGACGCGCCCTAGCCGGCAGCCTGAGTAATCTTGCCGCTGACAGCATTC
CTACCCAGGTTATAAAAGGGCATAAGCTTTCACCGACTTGTGTCACGATA
AGTAGAGACGAGCGCATTGCGTTTACGGGGAGCAAGGACAATGCCATTCT
GCAGTATGATTTGGAGACCGGTGTACGGACCGCCACGCTCTCCCCACACT
GGCGGGGTGGCCAGGGATACCAAGCCCACGAGAAGGAAGTGCTGGCAATA
GCGGTGTCATCGGACGGGAGGTTTCTAGCAGCAGGAGGGAGGGATAAGGA
GATTAGAATTTGGGATCTAAGGGAGCGGGGTGAGGGGAAAGGGCTGTCGC
TGAAGCCGGTGAAGACATTTGCGGGCCATCGGGATGCGGTTTCTGCGCTT
TGTTTTCGTGCGGACTCCCATGCGTTGTACTCGGGGTCGTTTGACCGGTG
TTTGAAGCATTGGAACATGGATGGGATGGTGTATGTCGAGACATTGTTTG
GGCATCAGGCGGAGATAAATGGCATGGATGCGTGGAGGAGGGAGCGACCG
GTGACCTGTGGGAGGGATCGGAGCGTGCGGGTGTGGAAATTGGTGGACGA
ATCACACATGTTGCTGAAATGCCCACAGGGTGTGGGAGAGGGAGGGGCGG
GGAGGGGTTTGGTGATGGGGGGGTCTTTGGATTGTGTGGCGATGCTATCG
GAGGAATCTTATGTAACGGGGGGGGAGGACGGAATGCTTGCTTTGTGGAA
TGTGAATAAGAAGAAGCCGGTGGCGATCGTGTCAAATGCACATGGAGGGG
CCGGGCATTGGATAAGTAGTGTTGCGACGATCAAGGGGACGGATTTAGTG
GCTTCAGGGTCGGATGATGGGGTGGTGCGGCTATGGCAGGCGACGACAAC
AGCTCAAGGGCAGGGGTCATCTTTGACATTCACAGGCACGATGTTGCCGG
CTCCGGGGTTTGTGAATGGCTTGGCGCTTGGTCATTCGGGAACATTGTTG
GTAGCGGCGTGTGGGAAAGAGCATCGCTTGGGAAGGTGGGCGCCGCAGAA
AGGAGCGGTAAATGGACTGCATATCCTGAGGTTGCCATTTGAGGAGGGGA
GTAAGGGAGAGGGGCGTAGTGGTGGTAGTAGTGGTGGTGAGAGTGGAAGC
GAAGAGGAGGATGAAGAGGATGAGGAGGAAGGGGAGGAGGAGGAGTATCC
TAATATGGGGGAGAACGAGGATGGAGAGGGAGTGGAAGAGGAGGAAGGGG
AGGAGGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGA
CGACGATGACGACGAGTGAACAAATCCATTCCAAATCCAATATTCCCCCC
CTTCTCAATCTTGTAAAGAGGTCCCGAAAACTTACAAAACGTAAATGCTC
GCGTCAAGTCTAGAGCATAATCTGAAAAAGAAGTAGATCAGAGAATGCGT
CAGCAAAGCATATTTTTTACAAGTAAGCGAAGCATGCTCA back to topCoding sequence (CDS) from alignment at chr8:476818..478807- >NO08G01520.1 ID=NO08G01520.1|Name=NO08G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr8:476818..478807- (Nannochloropsis oceanica) ATGTCACGAAGAAAAATCTTCGGTGGCACCGGAGTGCGCGGCCGGGGCCG TGGAGGAAGCCTCGGCAGTGGTGAACGCAGCACTACACGCGTTGGTGGTG GGCCAGGCGGTGCTTGGCGCGCCAGCTTTAACTTGGACCAGAGAAGCAGC CACAACAATGACGACGAGTACATTGACGATGTTGTCTCAGGGTCCGAGGA CGAGTTGCCGCGTAAAAAGGGCCGTGCGGCTGAGACAGACACAGCCGAGA TGGAGGACCGGGAGACGGCGGCGGAGAAACGCGTGCGTCTAGCCAAGCAA TACCTGGCACAAATGGAGGCAGCCATGGGCAGCGAAGACGATGGAGAGGG CTCAGGTGAAGGTGAAGATGACGTTGACGGAAAGGATGCGTTGGGCCTTC TGTTGGAAAAGGAACGGCTCAAGGCCTCTGGCTCGCTCCGACGCGCCCTA GCCGGCAGCCTGAGTAATCTTGCCGCTGACAGCATTCCTACCCAGGTTAT AAAAGGGCATAAGCTTTCACCGACTTGTGTCACGATAAGTAGAGACGAGC GCATTGCGTTTACGGGGAGCAAGGACAATGCCATTCTGCAGTATGATTTG GAGACCGGTGTACGGACCGCCACGCTCTCCCCACACTGGCGGGGTGGCCA GGGATACCAAGCCCACGAGAAGGAAGTGCTGGCAATAGCGGTGTCATCGG ACGGGAGGTTTCTAGCAGCAGGAGGGAGGGATAAGGAGATTAGAATTTGG GATCTAAGGGAGCGGGGTGAGGGGAAAGGGCTGTCGCTGAAGCCGGTGAA GACATTTGCGGGCCATCGGGATGCGGTTTCTGCGCTTTGTTTTCGTGCGG ACTCCCATGCGTTGTACTCGGGGTCGTTTGACCGGTGTTTGAAGCATTGG AACATGGATGGGATGGTGTATGTCGAGACATTGTTTGGGCATCAGGCGGA GATAAATGGCATGGATGCGTGGAGGAGGGAGCGACCGGTGACCTGTGGGA GGGATCGGAGCGTGCGGGTGTGGAAATTGGTGGACGAATCACACATGTTG CTGAAATGCCCACAGGGTGTGGGAGAGGGAGGGGCGGGGAGGGGTTTGGT GATGGGGGGGTCTTTGGATTGTGTGGCGATGCTATCGGAGGAATCTTATG TAACGGGGGGGGAGGACGGAATGCTTGCTTTGTGGAATGTGAATAAGAAG AAGCCGGTGGCGATCGTGTCAAATGCACATGGAGGGGCCGGGCATTGGAT AAGTAGTGTTGCGACGATCAAGGGGACGGATTTAGTGGCTTCAGGGTCGG ATGATGGGGTGGTGCGGCTATGGCAGGCGACGACAACAGCTCAAGGGCAG GGGTCATCTTTGACATTCACAGGCACGATGTTGCCGGCTCCGGGGTTTGT GAATGGCTTGGCGCTTGGTCATTCGGGAACATTGTTGGTAGCGGCGTGTG GGAAAGAGCATCGCTTGGGAAGGTGGGCGCCGCAGAAAGGAGCGGTAAAT GGACTGCATATCCTGAGGTTGCCATTTGAGGAGGGGAGTAAGGGAGAGGG GCGTAGTGGTGGTAGTAGTGGTGGTGAGAGTGGAAGCGAAGAGGAGGATG AAGAGGATGAGGAGGAAGGGGAGGAGGAGGAGTATCCTAATATGGGGGAG AACGAGGATGGAGAGGGAGTGGAAGAGGAGGAAGGGGAGGAGGAGGAAGG GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACGACGATGACGAC GAGTGA back to top
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