NO08G01510.1, NO08G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01510.1
Unique NameNO08G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2198
Alignment locationchr8:474620..476817 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:474620..476817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G01510.1 vs.
Match: EWM26719.1 (carbohydrate kinase fggy [Nannochloropsis gaditana])

HSP 1 Score: 679.9 bits (1753), Expect = 8.400e-192
Identity = 377/657 (57.38%), Postives = 452/657 (68.80%), Query Frame = 0 
Query:   15 LNNKHDRVVLVGAALSTAGLLASALASYRLLHDWNRHRYLHELDLHEEEASSQRARIGVAVDIGSSSVRCSAYVLRRDGGVAFIPGTLAQVKRDAMRPDGTVDAICILQDVESVLDACLCLVRGKGLGPYVAVVGFAAFVMNLVGVDREGSPITPVLTYADRHPTTGMYVERLRKLIATKAQ-----QQQQQQEQGPQQQQGQSLNIATA-GMTSRYYQYVRESSSKATKGVTKTSRPIAPGSGD--EPSSGSSNSSGTENDSG----IYNMTGAPIHTAYAAPQLCRLAEEEPDVMIRVFKWQSLVSFCLARWTGATHLPVSYSEASWTGLLDFRRLEWCAELTSMLPIQPLTLPSLADYQDGPHGRKLTSVYARRWPELTQARFFLGVGDGACANIGSGCRDAAHLAVTIGTSAAARVVISEN---GAGSAERLSVLPVVPPGLWCYRIDKSRLLLGGALTDGGSLIKWMMETFRVGTTTAAAEAEARQCQAGGHGLMVLPFLSGERSPGWNPDAKATITGLTKHTTGADIYRAGLESVALRLAAIVSLMAPHLRDGVVVGASGTALECSPLWRQILADVLGMEVRLGKQSEATSLGAAILMSEGFFGRQEEGGMEEGDEWEEEALHRHVPAEKAHTVYMEMLKRQDELYEAMYP 657
            LN+K  R    GA +S  GLLA+A AS+  L  W   RYL EL +     +  +  IG+AVDIGSSSVRCSAYVLR D  V F+ GTLAQ+KRDA+  DGT DA  +L DVE+ +D CLC +R   L   V+VVGFA+FVMNLVGVDR G PITPVLTYADRHP+T  Y  +LR+ +  ++      ++   Q  G Q  + ++L+ +TA  M +RY Q   E ++  +K           G  D  +   G S SS      G    ++N+TGAPIHTAYAAPQL RLA EE +++ RV KWQ+LVS CLARWTGATHLPVS+SEASWTGLLDFR LEW A LTSMLP+  L+LP LADY  GPHG +L   Y  RWPEL+QARF LGVGDGACAN+GSGC D+  LAVTIGTSAAARVVI+E      G         +VPPGLWCYRID+ RLLLGGALTDGGSL+KW+ ETFRVG    + E+ A + Q GGHGL +LPFLSGER+PGW P+A A+I GLTK TTGAD+YRAG+E+VALRLAAIV LM PHL   +VVGASGTALE S LWRQILAD LG+EV L +Q EATS G A LM+E  F   EE  + E    +E+ L RH P + AH  Y E L+RQD LY A++P
Sbjct:   30 LNSKEHRAFTAGAVISILGLLATAFASFSSLKKWKHRRYLKELGI----TNGSKNCIGLAVDIGSSSVRCSAYVLRVDRSVTFVSGTLAQIKRDAIEIDGTADAEKVLHDVETSVDECLCRLRAMDLAHLVSVVGFASFVMNLVGVDRSGRPITPVLTYADRHPSTATYARKLRQSMTDRSNDASHLERPFNQPSGGQSSEKETLSGSTAMAMANRYLQLFSEVATTLSKD---------DGDSDVADDDKGKSKSSSPSRIQGGTAVLHNVTGAPIHTAYAAPQLWRLAVEEAELVNRVSKWQTLVSLCLARWTGATHLPVSFSEASWTGLLDFRALEWSAALTSMLPVPRLSLPDLADYHQGPHGAELAPAYVSRWPELSQARFLLGVGDGACANLGSGCGDSGRLAVTIGTSAAARVVIAEEELPSGGEDGNHGRSSLVPPGLWCYRIDRRRLLLGGALTDGGSLLKWISETFRVGPNAVSTESLAGKQQPGGHGLTILPFLSGERAPGWCPNATASILGLTKQTTGADVYRAGMEAVALRLAAIVRLMRPHLGQNLVVGASGTALERSGLWRQILADALGLEVVLEEQGEATSKGVAALMAEWRF---EEEPLREA-ATQEQVLFRHTPHQDAHAAYQEALQRQDALYRALHP 669
The following BLAST results are available for this feature:
BLAST of NO08G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26719.18.400e-19257.38carbohydrate kinase fggy [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01510NO08G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01510.1NO08G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01510.1.cds1NO08G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01510.1 ID=NO08G01510.1|Name=NO08G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2198bp
ACAGCTCTCACGAGCCATACTCAAACCCTTCACACAGCCCACTCATAGAA
CTCCAAGACCATGCCCCTCTTCACCTTGCCGCAGCGGGTTATAGATATGT
GGCTGAATAATAAGCACGACCGGGTGGTGCTGGTAGGAGCTGCCTTGTCG
ACGGCAGGCTTGCTGGCCTCGGCTTTGGCCTCGTACCGCTTGCTCCACGA
CTGGAACCGTCACCGTTACCTGCATGAACTGGATCTGCACGAAGAGGAAG
CCAGCAGTCAAAGAGCGCGCATCGGGGTGGCTGTAGACATTGGCAGCTCT
TCCGTGCGGTGCAGCGCCTACGTGTTACGACGGGATGGCGGGGTGGCTTT
CATTCCTGGCACCTTGGCTCAAGTGAAGCGGGACGCCATGCGCCCCGACG
GCACAGTGGACGCAATATGCATCCTTCAAGACGTCGAAAGCGTGCTGGAC
GCATGTTTATGCCTCGTACGGGGCAAGGGGCTGGGGCCGTACGTGGCGGT
GGTGGGGTTTGCAGCTTTTGTCATGAACTTGGTGGGGGTGGACCGAGAGG
GCTCGCCCATCACTCCGGTCTTGACTTATGCGGACCGGCATCCGACTACA
GGGATGTACGTGGAGCGGTTAAGGAAGTTGATTGCCACCAAAGCGCAGCA
GCAACAGCAGCAACAAGAGCAAGGGCCACAACAGCAGCAGGGGCAATCGC
TGAACATTGCAACAGCGGGTATGACAAGTCGATATTATCAGTACGTCAGG
GAATCTAGCAGCAAGGCGACGAAAGGCGTGACAAAGACATCCCGCCCAAT
TGCACCCGGCAGCGGCGATGAGCCGAGCAGTGGTAGCAGTAACAGCAGTG
GGACAGAGAACGACAGTGGAATCTACAACATGACCGGCGCACCCATCCAT
ACGGCATATGCGGCCCCGCAGCTCTGTCGTTTGGCGGAGGAAGAACCTGA
TGTCATGATCCGGGTGTTCAAATGGCAATCCTTGGTGAGTTTCTGCTTAG
CTCGGTGGACGGGTGCTACCCACCTACCCGTCAGTTACTCGGAAGCCTCC
TGGACGGGTCTGCTTGATTTTCGTAGGCTGGAGTGGTGTGCGGAGCTCAC
GTCGATGCTGCCCATCCAGCCACTCACTCTTCCAAGCCTGGCTGATTACC
AGGACGGTCCGCACGGTCGAAAGCTGACTTCTGTTTATGCTCGCCGCTGG
CCCGAATTGACCCAAGCTCGCTTTTTCCTGGGAGTGGGTGATGGGGCTTG
CGCGAACATAGGTTCGGGCTGCCGAGATGCAGCGCATCTGGCTGTCACCA
TTGGCACGAGCGCTGCTGCTCGTGTTGTAATCTCGGAAAATGGTGCTGGC
TCTGCGGAAAGGCTAAGCGTCCTCCCTGTCGTTCCTCCGGGGTTGTGGTG
TTATCGGATTGACAAGAGCCGGTTGTTGTTAGGCGGGGCTCTGACGGATG
GCGGTTCGTTGATCAAATGGATGATGGAAACTTTCCGCGTTGGTACCACC
ACAGCCGCTGCTGAAGCAGAAGCAAGGCAGTGCCAGGCAGGAGGGCATGG
CCTGATGGTGCTGCCTTTTTTAAGCGGAGAGCGGTCGCCGGGGTGGAATC
CGGATGCGAAGGCGACGATCACGGGCTTGACTAAACATACAACGGGCGCT
GATATATATCGGGCGGGTTTGGAAAGTGTGGCTTTGCGCTTGGCTGCGAT
TGTAAGCTTGATGGCCCCGCATTTGAGGGATGGTGTTGTGGTGGGTGCGA
GTGGGACGGCGCTTGAGTGCTCGCCTTTATGGCGGCAGATTTTAGCGGAT
GTGCTAGGAATGGAAGTGAGACTAGGAAAACAAAGCGAGGCAACTTCGTT
GGGGGCAGCGATCTTGATGAGCGAAGGCTTCTTTGGAAGACAGGAGGAGG
GGGGAATGGAGGAAGGGGATGAGTGGGAGGAAGAGGCGTTGCATCGTCAT
GTGCCGGCGGAAAAAGCGCACACGGTTTACATGGAGATGTTGAAGCGACA
GGATGAACTGTATGAAGCGATGTACCCGTCGGGTCAGAGGTGCCGCGGGA
TAGATGATCGCGATCGGGACCAAATGTTGAATGTGTACCAATATGTCTGC
GGAAAAGTGTAGATTTTTGTGTATGTGTAAGCTTTAGATCGAATGTCTCC
TTCTTTACAAGAGAAATAGACGAACAAAAAAATGCAACAGACTACCGT
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protein sequence of NO08G01510.1

>NO08G01510.1-protein ID=NO08G01510.1-protein|Name=NO08G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MPLFTLPQRVIDMWLNNKHDRVVLVGAALSTAGLLASALASYRLLHDWNR
HRYLHELDLHEEEASSQRARIGVAVDIGSSSVRCSAYVLRRDGGVAFIPG
TLAQVKRDAMRPDGTVDAICILQDVESVLDACLCLVRGKGLGPYVAVVGF
AAFVMNLVGVDREGSPITPVLTYADRHPTTGMYVERLRKLIATKAQQQQQ
QQEQGPQQQQGQSLNIATAGMTSRYYQYVRESSSKATKGVTKTSRPIAPG
SGDEPSSGSSNSSGTENDSGIYNMTGAPIHTAYAAPQLCRLAEEEPDVMI
RVFKWQSLVSFCLARWTGATHLPVSYSEASWTGLLDFRRLEWCAELTSML
PIQPLTLPSLADYQDGPHGRKLTSVYARRWPELTQARFFLGVGDGACANI
GSGCRDAAHLAVTIGTSAAARVVISENGAGSAERLSVLPVVPPGLWCYRI
DKSRLLLGGALTDGGSLIKWMMETFRVGTTTAAAEAEARQCQAGGHGLMV
LPFLSGERSPGWNPDAKATITGLTKHTTGADIYRAGLESVALRLAAIVSL
MAPHLRDGVVVGASGTALECSPLWRQILADVLGMEVRLGKQSEATSLGAA
ILMSEGFFGRQEEGGMEEGDEWEEEALHRHVPAEKAHTVYMEMLKRQDEL
YEAMYPSGQRCRGIDDRDRDQMLNVYQYVCGKV*
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mRNA from alignment at chr8:474620..476817+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01510.1 ID=NO08G01510.1|Name=NO08G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2198bp|location=Sequence derived from alignment at chr8:474620..476817+ (Nannochloropsis oceanica)
ACAGCTCTCACGAGCCATACTCAAACCCTTCACACAGCCCACTCATAGAA
CTCCAAGACCATGCCCCTCTTCACCTTGCCGCAGCGGGTTATAGATATGT
GGCTGAATAATAAGCACGACCGGGTGGTGCTGGTAGGAGCTGCCTTGTCG
ACGGCAGGCTTGCTGGCCTCGGCTTTGGCCTCGTACCGCTTGCTCCACGA
CTGGAACCGTCACCGTTACCTGCATGAACTGGATCTGCACGAAGAGGAAG
CCAGCAGTCAAAGAGCGCGCATCGGGGTGGCTGTAGACATTGGCAGCTCT
TCCGTGCGGTGCAGCGCCTACGTGTTACGACGGGATGGCGGGGTGGCTTT
CATTCCTGGCACCTTGGCTCAAGTGAAGCGGGACGCCATGCGCCCCGACG
GCACAGTGGACGCAATATGCATCCTTCAAGACGTCGAAAGCGTGCTGGAC
GCATGTTTATGCCTCGTACGGGGCAAGGGGCTGGGGCCGTACGTGGCGGT
GGTGGGGTTTGCAGCTTTTGTCATGAACTTGGTGGGGGTGGACCGAGAGG
GCTCGCCCATCACTCCGGTCTTGACTTATGCGGACCGGCATCCGACTACA
GGGATGTACGTGGAGCGGTTAAGGAAGTTGATTGCCACCAAAGCGCAGCA
GCAACAGCAGCAACAAGAGCAAGGGCCACAACAGCAGCAGGGGCAATCGC
TGAACATTGCAACAGCGGGTATGACAAGTCGATATTATCAGTACGTCAGG
GAATCTAGCAGCAAGGCGACGAAAGGCGTGACAAAGACATCCCGCCCAAT
TGCACCCGGCAGCGGCGATGAGCCGAGCAGTGGTAGCAGTAACAGCAGTG
GGACAGAGAACGACAGTGGAATCTACAACATGACCGGCGCACCCATCCAT
ACGGCATATGCGGCCCCGCAGCTCTGTCGTTTGGCGGAGGAAGAACCTGA
TGTCATGATCCGGGTGTTCAAATGGCAATCCTTGGTGAGTTTCTGCTTAG
CTCGGTGGACGGGTGCTACCCACCTACCCGTCAGTTACTCGGAAGCCTCC
TGGACGGGTCTGCTTGATTTTCGTAGGCTGGAGTGGTGTGCGGAGCTCAC
GTCGATGCTGCCCATCCAGCCACTCACTCTTCCAAGCCTGGCTGATTACC
AGGACGGTCCGCACGGTCGAAAGCTGACTTCTGTTTATGCTCGCCGCTGG
CCCGAATTGACCCAAGCTCGCTTTTTCCTGGGAGTGGGTGATGGGGCTTG
CGCGAACATAGGTTCGGGCTGCCGAGATGCAGCGCATCTGGCTGTCACCA
TTGGCACGAGCGCTGCTGCTCGTGTTGTAATCTCGGAAAATGGTGCTGGC
TCTGCGGAAAGGCTAAGCGTCCTCCCTGTCGTTCCTCCGGGGTTGTGGTG
TTATCGGATTGACAAGAGCCGGTTGTTGTTAGGCGGGGCTCTGACGGATG
GCGGTTCGTTGATCAAATGGATGATGGAAACTTTCCGCGTTGGTACCACC
ACAGCCGCTGCTGAAGCAGAAGCAAGGCAGTGCCAGGCAGGAGGGCATGG
CCTGATGGTGCTGCCTTTTTTAAGCGGAGAGCGGTCGCCGGGGTGGAATC
CGGATGCGAAGGCGACGATCACGGGCTTGACTAAACATACAACGGGCGCT
GATATATATCGGGCGGGTTTGGAAAGTGTGGCTTTGCGCTTGGCTGCGAT
TGTAAGCTTGATGGCCCCGCATTTGAGGGATGGTGTTGTGGTGGGTGCGA
GTGGGACGGCGCTTGAGTGCTCGCCTTTATGGCGGCAGATTTTAGCGGAT
GTGCTAGGAATGGAAGTGAGACTAGGAAAACAAAGCGAGGCAACTTCGTT
GGGGGCAGCGATCTTGATGAGCGAAGGCTTCTTTGGAAGACAGGAGGAGG
GGGGAATGGAGGAAGGGGATGAGTGGGAGGAAGAGGCGTTGCATCGTCAT
GTGCCGGCGGAAAAAGCGCACACGGTTTACATGGAGATGTTGAAGCGACA
GGATGAACTGTATGAAGCGATGTACCCGTCGGGTCAGAGGTGCCGCGGGA
TAGATGATCGCGATCGGGACCAAATGTTGAATGTGTACCAATATGTCTGC
GGAAAAGTGTAGATTTTTGTGTATGTGTAAGCTTTAGATCGAATGTCTCC
TTCTTTACAAGAGAAATAGACGAACAAAAAAATGCAACAGACTACCGT
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Coding sequence (CDS) from alignment at chr8:474620..476817+

>NO08G01510.1 ID=NO08G01510.1|Name=NO08G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at chr8:474620..476817+ (Nannochloropsis oceanica)
ATGCCCCTCTTCACCTTGCCGCAGCGGGTTATAGATATGTGGCTGAATAA
TAAGCACGACCGGGTGGTGCTGGTAGGAGCTGCCTTGTCGACGGCAGGCT
TGCTGGCCTCGGCTTTGGCCTCGTACCGCTTGCTCCACGACTGGAACCGT
CACCGTTACCTGCATGAACTGGATCTGCACGAAGAGGAAGCCAGCAGTCA
AAGAGCGCGCATCGGGGTGGCTGTAGACATTGGCAGCTCTTCCGTGCGGT
GCAGCGCCTACGTGTTACGACGGGATGGCGGGGTGGCTTTCATTCCTGGC
ACCTTGGCTCAAGTGAAGCGGGACGCCATGCGCCCCGACGGCACAGTGGA
CGCAATATGCATCCTTCAAGACGTCGAAAGCGTGCTGGACGCATGTTTAT
GCCTCGTACGGGGCAAGGGGCTGGGGCCGTACGTGGCGGTGGTGGGGTTT
GCAGCTTTTGTCATGAACTTGGTGGGGGTGGACCGAGAGGGCTCGCCCAT
CACTCCGGTCTTGACTTATGCGGACCGGCATCCGACTACAGGGATGTACG
TGGAGCGGTTAAGGAAGTTGATTGCCACCAAAGCGCAGCAGCAACAGCAG
CAACAAGAGCAAGGGCCACAACAGCAGCAGGGGCAATCGCTGAACATTGC
AACAGCGGGTATGACAAGTCGATATTATCAGTACGTCAGGGAATCTAGCA
GCAAGGCGACGAAAGGCGTGACAAAGACATCCCGCCCAATTGCACCCGGC
AGCGGCGATGAGCCGAGCAGTGGTAGCAGTAACAGCAGTGGGACAGAGAA
CGACAGTGGAATCTACAACATGACCGGCGCACCCATCCATACGGCATATG
CGGCCCCGCAGCTCTGTCGTTTGGCGGAGGAAGAACCTGATGTCATGATC
CGGGTGTTCAAATGGCAATCCTTGGTGAGTTTCTGCTTAGCTCGGTGGAC
GGGTGCTACCCACCTACCCGTCAGTTACTCGGAAGCCTCCTGGACGGGTC
TGCTTGATTTTCGTAGGCTGGAGTGGTGTGCGGAGCTCACGTCGATGCTG
CCCATCCAGCCACTCACTCTTCCAAGCCTGGCTGATTACCAGGACGGTCC
GCACGGTCGAAAGCTGACTTCTGTTTATGCTCGCCGCTGGCCCGAATTGA
CCCAAGCTCGCTTTTTCCTGGGAGTGGGTGATGGGGCTTGCGCGAACATA
GGTTCGGGCTGCCGAGATGCAGCGCATCTGGCTGTCACCATTGGCACGAG
CGCTGCTGCTCGTGTTGTAATCTCGGAAAATGGTGCTGGCTCTGCGGAAA
GGCTAAGCGTCCTCCCTGTCGTTCCTCCGGGGTTGTGGTGTTATCGGATT
GACAAGAGCCGGTTGTTGTTAGGCGGGGCTCTGACGGATGGCGGTTCGTT
GATCAAATGGATGATGGAAACTTTCCGCGTTGGTACCACCACAGCCGCTG
CTGAAGCAGAAGCAAGGCAGTGCCAGGCAGGAGGGCATGGCCTGATGGTG
CTGCCTTTTTTAAGCGGAGAGCGGTCGCCGGGGTGGAATCCGGATGCGAA
GGCGACGATCACGGGCTTGACTAAACATACAACGGGCGCTGATATATATC
GGGCGGGTTTGGAAAGTGTGGCTTTGCGCTTGGCTGCGATTGTAAGCTTG
ATGGCCCCGCATTTGAGGGATGGTGTTGTGGTGGGTGCGAGTGGGACGGC
GCTTGAGTGCTCGCCTTTATGGCGGCAGATTTTAGCGGATGTGCTAGGAA
TGGAAGTGAGACTAGGAAAACAAAGCGAGGCAACTTCGTTGGGGGCAGCG
ATCTTGATGAGCGAAGGCTTCTTTGGAAGACAGGAGGAGGGGGGAATGGA
GGAAGGGGATGAGTGGGAGGAAGAGGCGTTGCATCGTCATGTGCCGGCGG
AAAAAGCGCACACGGTTTACATGGAGATGTTGAAGCGACAGGATGAACTG
TATGAAGCGATGTACCCGTCGGGTCAGAGGTGCCGCGGGATAGATGATCG
CGATCGGGACCAAATGTTGAATGTGTACCAATATGTCTGCGGAAAAGTGT
AG
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Synonyms
Publications