NO08G01480.1, NO08G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01480.1
Unique NameNO08G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1146
Alignment locationchr8:463750..464895 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:463750..464895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01480.1 vs.
Match: EWM26631.1 (NAD(P)-binding domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 455.7 bits (1171), Expect = 1.400e-124
Identity = 214/271 (78.97%), Postives = 240/271 (88.56%), Query Frame = 0 
Query:   21 ESLLSKLNSFLNRDYISDWAYYGFWFAFWLIVPYAVLLGIMVMVMYDAVTVKGNRKPVGPVLITGCDSGFGKGLAIALSELGWKVYATCMTDAGVAFFATNVNVTGLRMDVTKEDEVKDLMFIIDATHPTEGLYALVNNAGVDKFGTTDWCDVDHFKWHMEVNFFGQVRMVKQALPLLKRAARANVYHSSRILNITSFSGLLPGLFMKSAYGASKHAAESWSNSLRLELRHFGIQVGQINPVWHRTDIAHSQEQHLVKTYESLPPELQADY 292
            E+LLS+LNSFL+ DY+SDWAYYGFWF FWL +PY VL GI+ M +YDAVT KGNRKPVGPVLITGCDSGFG+GLA+ALSELGW VYATCMT  GV +FA N  VT L MDVTKE++V+ +M  +DA HP EGLYALVNNAGVD+FGTTDWCDV+H++WHME+NFFG VRMVK+ALPLLKRAAR N YHSSRILNITSFSGLLPGLFMKSAYGASKHAAESWSNSLR+ELRHFGIQV Q+NPVWHRT+IAHSQ  HLV+ YESL  +LQADY
Sbjct:   50 ETLLSQLNSFLSADYVSDWAYYGFWFVFWLFMPYVVLGGIVFMALYDAVTCKGNRKPVGPVLITGCDSGFGRGLALALSELGWNVYATCMTTDGVHYFAKNGKVTALIMDVTKEEDVRAVMAKVDAAHPKEGLYALVNNAGVDRFGTTDWCDVEHYRWHMEINFFGHVRMVKEALPLLKRAARHNDYHSSRILNITSFSGLLPGLFMKSAYGASKHAAESWSNSLRMELRHFGIQVCQVNPVWHRTEIAHSQRDHLVRIYESLSGDLQADY 320
The following BLAST results are available for this feature:
BLAST of NO08G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26631.11.400e-12478.97NAD(P)-binding domain containing protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01480NO08G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01480.1NO08G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01480.1.cds1NO08G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01480.1 ID=NO08G01480.1|Name=NO08G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
ATGACCAGCATCGCCTGCCCTGTAAAGCCCCTCGAGGCATCACTACCCCA
ACACCACCATGAGTCTCTCCTGAGCAAACTAAACTCCTTCCTAAACCGCG
ACTACATATCCGACTGGGCCTACTACGGCTTCTGGTTTGCCTTTTGGCTC
ATTGTGCCCTACGCGGTGCTTTTGGGCATCATGGTAATGGTAATGTACGA
CGCTGTGACGGTCAAGGGCAACCGCAAGCCAGTTGGACCCGTCCTCATAA
CTGGCTGTGATTCCGGGTTTGGCAAAGGATTGGCCATTGCCTTGAGCGAG
CTGGGGTGGAAGGTGTATGCCACCTGCATGACGGACGCGGGTGTAGCCTT
CTTCGCGACGAATGTCAACGTCACAGGCCTGCGCATGGACGTGACCAAAG
AAGACGAAGTGAAGGACCTCATGTTCATCATCGACGCCACCCACCCGACG
GAGGGCTTGTATGCCCTCGTCAATAATGCAGGAGTGGACAAATTTGGTAC
CACGGACTGGTGCGACGTCGACCACTTCAAATGGCACATGGAAGTTAATT
TCTTTGGACAAGTCCGAATGGTCAAGCAAGCCTTGCCCTTACTCAAACGG
GCGGCGCGTGCAAATGTGTACCACAGCTCGCGCATCCTCAACATCACTTC
CTTCAGTGGCCTTCTACCGGGCTTGTTTATGAAGTCCGCCTACGGCGCCT
CCAAGCACGCCGCGGAGTCCTGGTCTAATTCGTTGCGGTTGGAGCTTCGC
CATTTCGGCATCCAAGTCGGACAGATAAATCCTGTCTGGCACCGAACTGA
TATTGCCCACTCCCAAGAGCAACATCTCGTCAAGACATATGAATCTCTTC
CTCCCGAGCTTCAGGCCGACTATGGCAAGGAGTATTTTCTAAAGCTGGCT
GATGTGGCTTACAGGGGACGGCAATCACACACCTGGGAGCCGGAAAATGT
TGTGAAAGCCCTAGTTAATGCCGTTACAGCCGAGCGACACCGCTGCCAGA
GGCTTGTGGGGATGGATGCAATATTTTACATGACTCCGATTATGATGCTG
CCGCGAAGGTTTATAAACATGTTGTATGATAGGTGGGGTTTGGCGGCGGC
CGTACCAGTCGGGGCTTTGAGCAACACAGTCCGGACGCAGGTTTGA
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protein sequence of NO08G01480.1

>NO08G01480.1-protein ID=NO08G01480.1-protein|Name=NO08G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MTSIACPVKPLEASLPQHHHESLLSKLNSFLNRDYISDWAYYGFWFAFWL
IVPYAVLLGIMVMVMYDAVTVKGNRKPVGPVLITGCDSGFGKGLAIALSE
LGWKVYATCMTDAGVAFFATNVNVTGLRMDVTKEDEVKDLMFIIDATHPT
EGLYALVNNAGVDKFGTTDWCDVDHFKWHMEVNFFGQVRMVKQALPLLKR
AARANVYHSSRILNITSFSGLLPGLFMKSAYGASKHAAESWSNSLRLELR
HFGIQVGQINPVWHRTDIAHSQEQHLVKTYESLPPELQADYGKEYFLKLA
DVAYRGRQSHTWEPENVVKALVNAVTAERHRCQRLVGMDAIFYMTPIMML
PRRFINMLYDRWGLAAAVPVGALSNTVRTQV*
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mRNA from alignment at chr8:463750..464895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01480.1 ID=NO08G01480.1|Name=NO08G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp|location=Sequence derived from alignment at chr8:463750..464895- (Nannochloropsis oceanica)
ATGACCAGCATCGCCTGCCCTGTAAAGCCCCTCGAGGCATCACTACCCCA
ACACCACCATGAGTCTCTCCTGAGCAAACTAAACTCCTTCCTAAACCGCG
ACTACATATCCGACTGGGCCTACTACGGCTTCTGGTTTGCCTTTTGGCTC
ATTGTGCCCTACGCGGTGCTTTTGGGCATCATGGTAATGGTAATGTACGA
CGCTGTGACGGTCAAGGGCAACCGCAAGCCAGTTGGACCCGTCCTCATAA
CTGGCTGTGATTCCGGGTTTGGCAAAGGATTGGCCATTGCCTTGAGCGAG
CTGGGGTGGAAGGTGTATGCCACCTGCATGACGGACGCGGGTGTAGCCTT
CTTCGCGACGAATGTCAACGTCACAGGCCTGCGCATGGACGTGACCAAAG
AAGACGAAGTGAAGGACCTCATGTTCATCATCGACGCCACCCACCCGACG
GAGGGCTTGTATGCCCTCGTCAATAATGCAGGAGTGGACAAATTTGGTAC
CACGGACTGGTGCGACGTCGACCACTTCAAATGGCACATGGAAGTTAATT
TCTTTGGACAAGTCCGAATGGTCAAGCAAGCCTTGCCCTTACTCAAACGG
GCGGCGCGTGCAAATGTGTACCACAGCTCGCGCATCCTCAACATCACTTC
CTTCAGTGGCCTTCTACCGGGCTTGTTTATGAAGTCCGCCTACGGCGCCT
CCAAGCACGCCGCGGAGTCCTGGTCTAATTCGTTGCGGTTGGAGCTTCGC
CATTTCGGCATCCAAGTCGGACAGATAAATCCTGTCTGGCACCGAACTGA
TATTGCCCACTCCCAAGAGCAACATCTCGTCAAGACATATGAATCTCTTC
CTCCCGAGCTTCAGGCCGACTATGGCAAGGAGTATTTTCTAAAGCTGGCT
GATGTGGCTTACAGGGGACGGCAATCACACACCTGGGAGCCGGAAAATGT
TGTGAAAGCCCTAGTTAATGCCGTTACAGCCGAGCGACACCGCTGCCAGA
GGCTTGTGGGGATGGATGCAATATTTTACATGACTCCGATTATGATGCTG
CCGCGAAGGTTTATAAACATGTTGTATGATAGGTGGGGTTTGGCGGCGGC
CGTACCAGTCGGGGCTTTGAGCAACACAGTCCGGACGCAGGTTTGA
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Coding sequence (CDS) from alignment at chr8:463750..464895-

>NO08G01480.1 ID=NO08G01480.1|Name=NO08G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr8:463750..464895- (Nannochloropsis oceanica)
ATGACCAGCATCGCCTGCCCTGTAAAGCCCCTCGAGGCATCACTACCCCA
ACACCACCATGAGTCTCTCCTGAGCAAACTAAACTCCTTCCTAAACCGCG
ACTACATATCCGACTGGGCCTACTACGGCTTCTGGTTTGCCTTTTGGCTC
ATTGTGCCCTACGCGGTGCTTTTGGGCATCATGGTAATGGTAATGTACGA
CGCTGTGACGGTCAAGGGCAACCGCAAGCCAGTTGGACCCGTCCTCATAA
CTGGCTGTGATTCCGGGTTTGGCAAAGGATTGGCCATTGCCTTGAGCGAG
CTGGGGTGGAAGGTGTATGCCACCTGCATGACGGACGCGGGTGTAGCCTT
CTTCGCGACGAATGTCAACGTCACAGGCCTGCGCATGGACGTGACCAAAG
AAGACGAAGTGAAGGACCTCATGTTCATCATCGACGCCACCCACCCGACG
GAGGGCTTGTATGCCCTCGTCAATAATGCAGGAGTGGACAAATTTGGTAC
CACGGACTGGTGCGACGTCGACCACTTCAAATGGCACATGGAAGTTAATT
TCTTTGGACAAGTCCGAATGGTCAAGCAAGCCTTGCCCTTACTCAAACGG
GCGGCGCGTGCAAATGTGTACCACAGCTCGCGCATCCTCAACATCACTTC
CTTCAGTGGCCTTCTACCGGGCTTGTTTATGAAGTCCGCCTACGGCGCCT
CCAAGCACGCCGCGGAGTCCTGGTCTAATTCGTTGCGGTTGGAGCTTCGC
CATTTCGGCATCCAAGTCGGACAGATAAATCCTGTCTGGCACCGAACTGA
TATTGCCCACTCCCAAGAGCAACATCTCGTCAAGACATATGAATCTCTTC
CTCCCGAGCTTCAGGCCGACTATGGCAAGGAGTATTTTCTAAAGCTGGCT
GATGTGGCTTACAGGGGACGGCAATCACACACCTGGGAGCCGGAAAATGT
TGTGAAAGCCCTAGTTAATGCCGTTACAGCCGAGCGACACCGCTGCCAGA
GGCTTGTGGGGATGGATGCAATATTTTACATGACTCCGATTATGATGCTG
CCGCGAAGGTTTATAAACATGTTGTATGATAGGTGGGGTTTGGCGGCGGC
CGTACCAGTCGGGGCTTTGAGCAACACAGTCCGGACGCAGGTTTGA
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Synonyms
Publications