NO08G01470.1, NO08G01470.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G01470.1
Unique Name	NO08G01470.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1167
Alignment location	chr8:460817..462695 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:460817..462695 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G01470.1 vs.
Match: EWM26706.1 (retinol dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 637.9 bits (1644), Expect = 2.100e-179
Identity = 300/379 (79.16%), Postives = 335/379 (88.39%), Query Frame = 0

Query:   11 IESMAVTVDMSPVSLSPELEKAPEPLLSRLNNFLHSNIYVYLITYYLFWLGFWLIMPLAGFFTMLGFGLYDLFTAKGFRKPCGPVLITGTSSGFGLDLTLQLAAQGWKVYACVRKGADLAPFARYPNVKGLIMDVTNEEQIRAAIATVEAECP-EGLYALVNNAGYEQYGTTDWCGLDYFKLHMDVNYYGPIRLTKTALPLLKKHGKAGKEGARIININSTSGLLPGLPLKGGYSASKHAAEAWSNSLRQEMRRFNVEITVINPSWHATRCALPPKDKLLESFRAAPPEVQADYGEEYVLEAADEAYNGRQWFTWNPENVGRVMLWAVTAEKYRPQYLVGMDARFVNMPFLALPRRIMNKLEDGAPFAKMIPAGAVDRD 389
            +E M+ TVD+      PE  +  EPLLSRLNNFLHSNIYVY+ITYYL+WLGFWL +P+  FFTMLGFGLYDLFTAKGFRKPCGPVLITG SSGFGLDLT+ LAAQGWKVYACVR+ AD+APF+  PNVKGLI+DVTNEEQ+RAA ATV+ E P EGLYALVNNAG+E YGTTDWC LDYFK+HMDVNYYGPIR+TK ALPLLK++G+ G   ARIININSTSGLLPGLPLKGGYSASKHAAEAWSNSLRQEMR FN+++TV+NPSWH TRCALPPK+KLL  FRAAPP VQ DYGE YV+EAA+EAY GRQWFTW PENVGRVMLWAVTAE+YRPQY+VG+DARFVNMPFLALPRRIMN LED APF+KM+PA A+ R+
Sbjct:    5 VEIMSTTVDIPSAPSKPE--EKHEPLLSRLNNFLHSNIYVYIITYYLYWLGFWLFIPVVAFFTMLGFGLYDLFTAKGFRKPCGPVLITGCSSGFGLDLTMALAAQGWKVYACVRREADMAPFSNNPNVKGLILDVTNEEQVRAAFATVDGENPEEGLYALVNNAGFEHYGTTDWCSLDYFKVHMDVNYYGPIRVTKAALPLLKRYGRGGSAAARIININSTSGLLPGLPLKGGYSASKHAAEAWSNSLRQEMRHFNIQVTVVNPSWHDTRCALPPKEKLLAVFRAAPPAVQEDYGEPYVVEAAEEAYTGRQWFTWKPENVGRVMLWAVTAERYRPQYIVGLDARFVNMPFLALPRRIMNNLEDAAPFSKMLPAAAIHRE 381

The following BLAST results are available for this feature:

BLAST of NO08G01470.1 vs.

BLAST of NO08G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26706.1	2.100e-179	79.16	retinol dehydrogenase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G01470	NO08G01470	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G01470.1	NO08G01470.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G01470.1.cds1	NO08G01470.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01470.1.cds2	NO08G01470.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01470.1.cds3	NO08G01470.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01470.1.cds4	NO08G01470.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01470.1.cds5	NO08G01470.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01470.1.cds6	NO08G01470.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G01470.1.cds7	NO08G01470.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:460817..462695-
coding sequence from alignment at chr8:460817..462695-

mRNA sequence

>NO08G01470.1 ID=NO08G01470.1|Name=NO08G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ATGACCTCCGTGGGCACGAAAAAGGAAAATATTGAGAGTATGGCTGTCAC
CGTGGACATGTCCCCGGTCTCATTGTCGCCCGAGCTTGAGAAAGCACCAG
AACCTCTCCTGAGCAGGCTCAACAACTTTCTGCATAGCAACATTTATGTG
TACCTGATAACGTACTACCTCTTCTGGCTGGGTTTCTGGCTGATCATGCC
TCTTGCGGGCTTTTTTACCATGCTGGGTTTTGGTTTATACGATCTCTTCA
CTGCCAAGGGGTTCCGCAAGCCATGCGGGCCCGTGCTTATCACGGGCACA
AGTTCGGGCTTCGGCTTGGACTTGACCCTGCAGCTGGCTGCTCAAGGCTG
GAAGGTCTACGCCTGCGTACGGAAGGGGGCAGACCTGGCGCCTTTCGCCC
GCTACCCGAACGTCAAGGGCTTGATCATGGATGTGACAAACGAGGAGCAG
ATACGTGCTGCCATTGCCACGGTCGAAGCGGAATGTCCCGAGGGCCTGTA
CGCGCTCGTTAACAATGCCGGATACGAACAGTACGGCACCACTGATTGGT
GTGGCCTGGACTACTTTAAACTGCACATGGATGTGAATTACTACGGTCCT
ATCCGTCTGACCAAAACCGCGCTGCCCTTGCTAAAAAAGCACGGCAAGGC
TGGGAAGGAAGGGGCGCGCATCATCAACATCAATTCGACAAGCGGGCTCT
TGCCGGGTTTGCCTCTAAAAGGCGGCTACAGCGCCTCTAAGCACGCCGCC
GAGGCCTGGTCCAACTCCCTGCGTCAGGAAATGCGTCGTTTTAATGTCGA
GATCACTGTGATCAACCCCTCTTGGCACGCGACCCGTTGCGCCCTACCCC
CCAAAGACAAGCTCCTGGAGAGCTTTCGGGCGGCGCCTCCGGAGGTGCAA
GCAGACTATGGGGAGGAGTACGTGCTGGAGGCGGCCGATGAAGCATACAA
TGGCAGGCAGTGGTTCACCTGGAATCCCGAAAATGTTGGTCGTGTCATGC
TGTGGGCCGTTACTGCCGAGAAATACAGACCCCAGTATCTCGTCGGCATG
GACGCTCGCTTTGTCAACATGCCTTTCTTGGCCCTCCCCCGCAGGATCAT
GAACAAGTTGGAGGATGGCGCGCCGTTTGCGAAGATGATTCCCGCTGGGG
CAGTCGATCGGGATTAA

protein sequence of NO08G01470.1

>NO08G01470.1-protein ID=NO08G01470.1-protein|Name=NO08G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MTSVGTKKENIESMAVTVDMSPVSLSPELEKAPEPLLSRLNNFLHSNIYV
YLITYYLFWLGFWLIMPLAGFFTMLGFGLYDLFTAKGFRKPCGPVLITGT
SSGFGLDLTLQLAAQGWKVYACVRKGADLAPFARYPNVKGLIMDVTNEEQ
IRAAIATVEAECPEGLYALVNNAGYEQYGTTDWCGLDYFKLHMDVNYYGP
IRLTKTALPLLKKHGKAGKEGARIININSTSGLLPGLPLKGGYSASKHAA
EAWSNSLRQEMRRFNVEITVINPSWHATRCALPPKDKLLESFRAAPPEVQ
ADYGEEYVLEAADEAYNGRQWFTWNPENVGRVMLWAVTAEKYRPQYLVGM
DARFVNMPFLALPRRIMNKLEDGAPFAKMIPAGAVDRD*

mRNA from alignment at chr8:460817..462695-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G01470.1 ID=NO08G01470.1|Name=NO08G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at chr8:460817..462695- (Nannochloropsis oceanica)
ATGACCTCCGTGGGCACGAAAAAGGAAAATATTGAGAGTATGGCTGTCAC
CGTGGACATGTCCCCGGTCTCATTGTCGCCCGAGCTTGAGAAAGCACCAG
AACCTCTCCTGAGCAGGCTCAACAACTTTCTGCATAGCAACATTTATGTG
TACCTGATAACGTACTACCTCTTCTGGCTGGGTTTCTGGCTGATCATGCC
TCTTGCGGGCTTTTTTACCATGCTGGGTTTTGGTTTATACGATCTCTTCA
CTGCCAAGGGGTTCCGCAAGCCATGCGGGCCCGTGCTTATCACGGGCACA
AGTTCGGGCTTCGGCTTGGACTTGACCCTGCAGCTGGCTGCTCAAGGCTG
GAAGGTACGTGCAATCCTTGTAAAAGTTGTATTTTTCCTTATTAAGATAT
TATCTGAAGCACCAGCCTTCTGTTTCTGACGCTCTATCTCCGGGCCTCCG
TACCTCCTTGCTTAGGTCTACGCCTGCGTACGGAAGGGGGCAGACCTGGC
GCCTTTCGCCCGCTACCCGAACGTCAAGGGCTTGATCATGGATGTGACAA
ACGAGGAGCAGATACGTGCTGCCATTGCCACGGTCGAAGCGGAATGTCCC
GAGGGCCTGTACGCGCTCGTTAACAATGCCGGTAAGAAAGGAACGTTACC
ATTGCTTTCATGCGGGATTTCATTCTTCTTCTGGATAATTTTCTGTTATT
CCTTACTTATTTTTATAGGATACGAACAGTACGGCACCACTGATTGGTGT
GGCCTGGACTACTTTAAACTGTGCGTACTTTCTCCTCCCCCGTTCCCCTC
CTCCTTTCCCCCCCCTCCTGCCTTATCCATCCCCTGTGACACCGATGACA
TGATTGTAATACAGGCACATGGATGTGAATTACTACGGTCCTATCCGTCT
GACCAAAACCGCGCTGCCCTTGCTAAAAAAGCACGGCAAGGCTGGGAAGG
AAGGGGCGCGCATCATCAACATCAATTCGACAAGCGGGCTCTTGCCGGGT
TTGCCTCTAAAAGGCGGTAAGTGTGCTAGCTATTACACCAAAACTTTATC
ATGATTTTTTGCCTCTTTTGTTCGTCAAGTCCTTCATGTGACAGGTCTTA
ATGTTTACCCTCTCCCTGCCTCCCTCCTTGCCTCCCTCCTTGCCTCCCTG
CCTCCCTCCCTCTTTCAGGCTACAGCGCCTCTAAGCACGCCGCCGAGGCC
TGGTCCAACTCCCTGCGTCAGGAAATGCGTCGTTTTAATGTCGAGATCAC
TGTGATCAACCCCTCTTGGCACGCGACCCGTTGCGCCCTACCCCCCAAAG
ACAAGCTCCTGGAGAGCTTTCGGGCGGCGCCTCCGGAGGTGCAAGCAGAC
TATGGGGAGGAGTACGTGCTGGAGGCGGCCGATGAAGCATACAATGGCAG
GCAGTGGTTCACCTGGAATGTAAGAGGTGGAAGGGGGACATGGGAGAGAG
GAGGGAGGCAGTGTCAAGGCCAGCCCTGAAACCGTCCCGTTCGTCTTGCC
CCCGCTTCTGTCAGGTTCTCACCTTTTTCTTTCTGATTTCTTCTCCTTGC
TTCCTGCATTCACGTAACGAACAGCCCGAAAATGTTGGTCGTGTCATGCT
GTGGGCCGTTACTGCCGAGAAATACAGACCCCAGTATCTCGTCGGCATGG
ACGCTCGCTTTGTCAACATGCCTTTCTTGGCCCTCCCCCGCAGGTAAAGC
ATGAGTGGGAGCAGCAAGGAGGGACATTTTTTTTCTTATGACAAGAGCTA
CAATTTATTGCCCCCTTTCTACGTTAATCTTCTTTTTTCCCTTTCTACAT
TTCCAGGATCATGAACAAGTTGGAGGATGGCGCGCCGTTTGCGAAGATGA
TTCCCGCTGGGGCAGTCGATCGGGATTAA

Coding sequence (CDS) from alignment at chr8:460817..462695-

>NO08G01470.1 ID=NO08G01470.1|Name=NO08G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at chr8:460817..462695- (Nannochloropsis oceanica)
ATGACCTCCGTGGGCACGAAAAAGGAAAATATTGAGAGTATGGCTGTCAC
CGTGGACATGTCCCCGGTCTCATTGTCGCCCGAGCTTGAGAAAGCACCAG
AACCTCTCCTGAGCAGGCTCAACAACTTTCTGCATAGCAACATTTATGTG
TACCTGATAACGTACTACCTCTTCTGGCTGGGTTTCTGGCTGATCATGCC
TCTTGCGGGCTTTTTTACCATGCTGGGTTTTGGTTTATACGATCTCTTCA
CTGCCAAGGGGTTCCGCAAGCCATGCGGGCCCGTGCTTATCACGGGCACA
AGTTCGGGCTTCGGCTTGGACTTGACCCTGCAGCTGGCTGCTCAAGGCTG
GAAGGTCTACGCCTGCGTACGGAAGGGGGCAGACCTGGCGCCTTTCGCCC
GCTACCCGAACGTCAAGGGCTTGATCATGGATGTGACAAACGAGGAGCAG
ATACGTGCTGCCATTGCCACGGTCGAAGCGGAATGTCCCGAGGGCCTGTA
CGCGCTCGTTAACAATGCCGGATACGAACAGTACGGCACCACTGATTGGT
GTGGCCTGGACTACTTTAAACTGCACATGGATGTGAATTACTACGGTCCT
ATCCGTCTGACCAAAACCGCGCTGCCCTTGCTAAAAAAGCACGGCAAGGC
TGGGAAGGAAGGGGCGCGCATCATCAACATCAATTCGACAAGCGGGCTCT
TGCCGGGTTTGCCTCTAAAAGGCGGCTACAGCGCCTCTAAGCACGCCGCC
GAGGCCTGGTCCAACTCCCTGCGTCAGGAAATGCGTCGTTTTAATGTCGA
GATCACTGTGATCAACCCCTCTTGGCACGCGACCCGTTGCGCCCTACCCC
CCAAAGACAAGCTCCTGGAGAGCTTTCGGGCGGCGCCTCCGGAGGTGCAA
GCAGACTATGGGGAGGAGTACGTGCTGGAGGCGGCCGATGAAGCATACAA
TGGCAGGCAGTGGTTCACCTGGAATCCCGAAAATGTTGGTCGTGTCATGC
TGTGGGCCGTTACTGCCGAGAAATACAGACCCCAGTATCTCGTCGGCATG
GACGCTCGCTTTGTCAACATGCCTTTCTTGGCCCTCCCCCGCAGGATCAT
GAACAAGTTGGAGGATGGCGCGCCGTTTGCGAAGATGATTCCCGCTGGGG
CAGTCGATCGGGATTAA

Synonyms

Publications