NO08G01310.2, NO08G01310.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01310.2
Unique NameNO08G01310.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1623
Alignment locationchr8:395618..397548 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:395618..397548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01310.2 vs.
Match: EWM21694.1 (mitochondrial substrate carrier family protein [Nannochloropsis gaditana])

HSP 1 Score: 300.1 bits (767), Expect = 7.400e-78
Identity = 143/243 (58.85%), Postives = 181/243 (74.49%), Query Frame = 0 
Query:   35 KASPAIKAMAGSLGGLMEACLLQPVDTIKTRMQLNPVLFPGIVSTGSSIVKTEGTKSLWKGLTPFATHLYLKYALRFGTNAGFQSLLMDKETGKLDAPRRVLAGLGAGVTEALVIVTPFEVIKIRLQNQMGTDKAMLKYHGPIDAVIKTVKNEGLLALWSGATPTVFRNGLNQASMFWFKNVVDEVLWHKREG------DEKQLQIWQSMASGFLATCPGMVLTNPFDIAKVNEKRLVHLPTA 272
            KASP +KA+AGS+GGL+EA  LQPVDTIKTRMQ+ P  +P ++ T   I   E   +LWKGLTPFATHL+ KYALRFGTNA FQS+L D ETGKL + RR+LAGLGAGVTEA++IVTPF+V+K+RLQ Q G DKA LKY GP+DA  K +  EG+ ALWSG TPT++RNG+ QA+MF+ K  +D+ +   R+       + +Q Q+WQSMASGF+A+CPG+V+TNP DI KV    +    TA
Sbjct:  102 KASPLLKALAGSMGGLVEAIALQPVDTIKTRMQILPTSYPSMIKTAQKIASEESVPALWKGLTPFATHLFSKYALRFGTNAAFQSILTDSETGKLSSSRRLLAGLGAGVTEAILIVTPFDVVKVRLQAQHGMDKANLKYQGPLDAARKIISQEGVGALWSGVTPTIYRNGIQQATMFFLKTWIDDNVLGVRKSLTKDGQETRQPQVWQSMASGFMASCPGLVMTNPLDIVKVRASGIRSSKTA 344
The following BLAST results are available for this feature:
BLAST of NO08G01310.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21694.17.400e-7858.85mitochondrial substrate carrier family protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01310NO08G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01310.2NO08G01310.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01310.2.cds1NO08G01310.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01310.2.cds2NO08G01310.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01310.2.cds3NO08G01310.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01310.2 ID=NO08G01310.2|Name=NO08G01310.2|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
AAAAACACAGGGGTTACCCTGCCTTGCTGCTTCTCTTTGACCCCGTCGTT
CCCCCCAGGTCGAAACCCGCTGTCCTCTTCCTCTACATATTTTGCCTCGT
CATCACTTAGGAATGGCACCTCAGCTCCTCAAATTCCCATCTTTGGCGGG
TGGCACCACCACGACCACCGTGGTTATCAGCGGCAAGCACACGGAGAAAG
AAGTCACGATAACCAAGGCCTCCCCGGCCATAAAAGCCATGGCCGGGTCC
CTTGGCGGCCTCATGGAAGCCTGTTTATTGCAACCCGTAGATACAATCAA
GACGCGCATGCAACTCAACCCTGTTCTATTTCCCGGCATCGTCTCTACGG
GCTCCTCCATTGTCAAGACAGAGGGAACCAAGTCGCTCTGGAAGGGCTTG
ACGCCGTTTGCCACGCATTTGTACTTGAAATACGCATTACGTTTCGGGAC
GAATGCTGGGTTTCAATCATTGTTAATGGACAAGGAGACAGGTAAACTGG
ATGCACCGCGACGAGTGTTGGCGGGACTGGGCGCGGGCGTCACAGAGGCT
TTGGTGATTGTAACCCCTTTTGAAGTCATCAAGATCCGGCTGCAGAATCA
GATGGGGACGGACAAGGCCATGCTCAAGTACCACGGGCCCATCGATGCCG
TGATTAAGACCGTGAAAAATGAGGGTCTACTTGCCCTTTGGAGCGGCGCA
ACCCCCACCGTCTTTCGGAACGGGCTTAACCAAGCCAGCATGTTCTGGTT
CAAAAACGTCGTGGATGAAGTGCTGTGGCACAAGCGAGAAGGCGATGAGA
AGCAGCTGCAGATTTGGCAGTCTATGGCGTCTGGTTTTTTGGCGACGTGT
CCAGGAATGGTTTTGACAAACCCCTTTGATATAGCTAAGGTGAACGAAAA
ACGTCTTGTTCACTTACCTACAGCATTTTTTCGTCCATCATTTCTCTTTT
CGACGTGATTGAACTGCTCTCCTTTAAATTCCCTCCTCCCACATTTCTCC
CCTCACCTTCCCTCCCTTCATCCTTCCCTCGCTTCCCCCCATAGACCCGC
CTTCAAGTCCAAGAGAAAAATGCCACTGGTGCCGCTCCCAAATACCGTGG
GCTTTTCCAAACCATGGCGGTCATCGCAAAGGAAGAGGGGTTTAAGCAAT
TGTACCGAGGGTTGTTGCCTCGTATATTGAGAGTGCCGCCGGGGATGGCG
ATTACCTGGGGGATGACCGATCAGATAGTGCAGATGTATGAGAGGAGGTA
GATGAAAAGAACAAATGTAAGGAGGGAGGCAAGGAGAAGAGGGGAGGGGG
TTCTGGTTTAATGGCTTGTGGGATGAAGGGAACTTTGGCCAGAATATGTA
TAAATTAGAGGGGAGAATTCATTTTTTTTGCAGTGTGACATGGACATGAG
AAAGATATGGCTGGTATCCCATAGACTATAGAACCATACCGAATGTAAAC
TTGTAAAGCACTATTAATGCGGAAGACGAGGAACGAGTCTGGGAACACTT
CCTTTCACTGTCTGCGCGGCAGGCATTATAATAAGCAAGACTATTTCGAT
ACCATACATCACTTTTCTTTTCTAGATGTGCGCAATAACAATATAGTAAA
ATAATAATCACAGAAGTGTATGA
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protein sequence of NO08G01310.2

>NO08G01310.2-protein ID=NO08G01310.2-protein|Name=NO08G01310.2|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MAPQLLKFPSLAGGTTTTTVVISGKHTEKEVTITKASPAIKAMAGSLGGL
MEACLLQPVDTIKTRMQLNPVLFPGIVSTGSSIVKTEGTKSLWKGLTPFA
THLYLKYALRFGTNAGFQSLLMDKETGKLDAPRRVLAGLGAGVTEALVIV
TPFEVIKIRLQNQMGTDKAMLKYHGPIDAVIKTVKNEGLLALWSGATPTV
FRNGLNQASMFWFKNVVDEVLWHKREGDEKQLQIWQSMASGFLATCPGMV
LTNPFDIAKVNEKRLVHLPTAFFRPSFLFST*
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mRNA from alignment at chr8:395618..397548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01310.2 ID=NO08G01310.2|Name=NO08G01310.2|organism=Nannochloropsis oceanica|type=mRNA|length=1931bp|location=Sequence derived from alignment at chr8:395618..397548- (Nannochloropsis oceanica)
AAAAACACAGGGGTTACCCTGCCTTGCTGCTTCTCTTTGACCCCGTCGTT
CCCCCCAGGTCGAAACCCGCTGTCCTCTTCCTCTACATATTTTGCCTCGT
CATCACTTAGGAATGGCACCTCAGCTCCTCAAATTCCCATCTTTGGCGGG
TGGCACCACCACGACCACCGTGGTTATCAGCGGCAAGCACACGGAGAAAG
AAGTCACGATAACCAAGGCCTCCCCGGCCATAAAAGCCATGGCCGGGTCC
CTTGGCGGCCTCATGGAAGCCTGTTTATTGCAACCCGTAGATACAATCAA
GACGCGCATGCAACTCAACCCTGTTCTATTTCCCGGCATCGTCTCTACGG
GCTCCTCCATTGTCAAGACAGAGGGAACCAAGTCGCTCTGGAAGGGCTTG
ACGCCGTTTGCCACGCATTTGTACTTGAAATACGCATTACGTTTCGGGAC
GAATGCTGGGTTTCAATCATTGTTAATGGACAAGGAGACAGGTAAACTGG
ATGCACCGCGACGAGTGTTGGCGGGACTGGGCGCGGGCGTCACAGAGGTA
GGTAAAGAGGGAGGAAGGAAGGGGTTTAGGAGTGCCCCTTGCCACAATCT
CCGAAAGAATTTATCATGCCGAATTAAAATACGCTTTCACGATTCCCTTC
AATATTCCTCTTTCTATCCCCGTCTTCCACCCTTTCCCTCTCAACTTGGA
AGGCTTTGGTGATTGTAACCCCTTTTGAAGTCATCAAGATCCGGCTGCAG
AATCAGATGGGGACGGACAAGGCCATGCTCAAGTACCACGGGCCCATCGA
TGCCGTGATTAAGACCGTGAAAAATGAGGTAGGCAGATAATGAGAAGGAG
GAGGGGTACGTGGGTAGGGACTACGCCTCCGTCAAGTCTCAGCCTCTGTG
TAAAGAGAAGCGAATGAGAGTCTGCAAAATCGAAACACATCCTGCTCACC
TTTCCTCCCCCATCCTCTTCCCACCCATTAGGGTCTACTTGCCCTTTGGA
GCGGCGCAACCCCCACCGTCTTTCGGAACGGGCTTAACCAAGCCAGCATG
TTCTGGTTCAAAAACGTCGTGGATGAAGTGCTGTGGCACAAGCGAGAAGG
CGATGAGAAGCAGCTGCAGATTTGGCAGTCTATGGCGTCTGGTTTTTTGG
CGACGTGTCCAGGAATGGTTTTGACAAACCCCTTTGATATAGCTAAGGTG
AACGAAAAACGTCTTGTTCACTTACCTACAGCATTTTTTCGTCCATCATT
TCTCTTTTCGACGTGATTGAACTGCTCTCCTTTAAATTCCCTCCTCCCAC
ATTTCTCCCCTCACCTTCCCTCCCTTCATCCTTCCCTCGCTTCCCCCCAT
AGACCCGCCTTCAAGTCCAAGAGAAAAATGCCACTGGTGCCGCTCCCAAA
TACCGTGGGCTTTTCCAAACCATGGCGGTCATCGCAAAGGAAGAGGGGTT
TAAGCAATTGTACCGAGGGTTGTTGCCTCGTATATTGAGAGTGCCGCCGG
GGATGGCGATTACCTGGGGGATGACCGATCAGATAGTGCAGATGTATGAG
AGGAGGTAGATGAAAAGAACAAATGTAAGGAGGGAGGCAAGGAGAAGAGG
GGAGGGGGTTCTGGTTTAATGGCTTGTGGGATGAAGGGAACTTTGGCCAG
AATATGTATAAATTAGAGGGGAGAATTCATTTTTTTTGCAGTGTGACATG
GACATGAGAAAGATATGGCTGGTATCCCATAGACTATAGAACCATACCGA
ATGTAAACTTGTAAAGCACTATTAATGCGGAAGACGAGGAACGAGTCTGG
GAACACTTCCTTTCACTGTCTGCGCGGCAGGCATTATAATAAGCAAGACT
ATTTCGATACCATACATCACTTTTCTTTTCTAGATGTGCGCAATAACAAT
ATAGTAAAATAATAATCACAGAAGTGTATGA
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Coding sequence (CDS) from alignment at chr8:395618..397548-

>NO08G01310.2 ID=NO08G01310.2|Name=NO08G01310.2|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr8:395618..397548- (Nannochloropsis oceanica)
ATGGCACCTCAGCTCCTCAAATTCCCATCTTTGGCGGGTGGCACCACCAC
GACCACCGTGGTTATCAGCGGCAAGCACACGGAGAAAGAAGTCACGATAA
CCAAGGCCTCCCCGGCCATAAAAGCCATGGCCGGGTCCCTTGGCGGCCTC
ATGGAAGCCTGTTTATTGCAACCCGTAGATACAATCAAGACGCGCATGCA
ACTCAACCCTGTTCTATTTCCCGGCATCGTCTCTACGGGCTCCTCCATTG
TCAAGACAGAGGGAACCAAGTCGCTCTGGAAGGGCTTGACGCCGTTTGCC
ACGCATTTGTACTTGAAATACGCATTACGTTTCGGGACGAATGCTGGGTT
TCAATCATTGTTAATGGACAAGGAGACAGGTAAACTGGATGCACCGCGAC
GAGTGTTGGCGGGACTGGGCGCGGGCGTCACAGAGGCTTTGGTGATTGTA
ACCCCTTTTGAAGTCATCAAGATCCGGCTGCAGAATCAGATGGGGACGGA
CAAGGCCATGCTCAAGTACCACGGGCCCATCGATGCCGTGATTAAGACCG
TGAAAAATGAGGGTCTACTTGCCCTTTGGAGCGGCGCAACCCCCACCGTC
TTTCGGAACGGGCTTAACCAAGCCAGCATGTTCTGGTTCAAAAACGTCGT
GGATGAAGTGCTGTGGCACAAGCGAGAAGGCGATGAGAAGCAGCTGCAGA
TTTGGCAGTCTATGGCGTCTGGTTTTTTGGCGACGTGTCCAGGAATGGTT
TTGACAAACCCCTTTGATATAGCTAAGGTGAACGAAAAACGTCTTGTTCA
CTTACCTACAGCATTTTTTCGTCCATCATTTCTCTTTTCGACGTGA
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Synonyms
Publications